BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22460.1
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318977 jgi|Araly1|318977|fgenesh1_pm.C_scaffold_3001993 1519 0.0
Ahg493405 jgi|Araly1|493405|fgenesh2_kg.7__2838__AT4G14880.2 579 2e-164
> Ahg318977 jgi|Araly1|318977|fgenesh1_pm.C_scaffold_3001993
Length=918
Score = 1519 bits (822), Expect = 0.0
Identities = 887/919 (97%), Gaps = 2/919 (0%)
Strand=Plus/Plus
Query 84 ATGGCTTCAGTGG-CTCCTAAAATCGCTAAAGATGTAACTGAACTAATAGGGAACACTCC 142
|||||||||| || || ||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 1 ATGGCTTCAG-GGACTTCTAAAATCGCTAAAGATGTTACTGAATTAATAGGTAACACTCC 59
Query 143 ATTAGTGTATCTAAACAAAGTAGCTAAAGATTGTGTTGGTCATGTTGCTGCTAAGCTTGA 202
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATTAGTGTATCTAAACAAAGTGGCTAAAGATTGTGTTGGTCATGTTGCTGCTAAGCTTGA 119
Query 203 GATGATGGAACCATGTTCTAGCGTCAAAGACAGGATTGGTTATAGTATGATTGCTGATGC 262
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GATGATGGAACCATGCTCTAGCGTCAAAGACAGGATTGGTTATAGTATGATTGCTGATGC 179
Query 263 AGAAGCTAAAGGACTTATTAAACCGGGAGAGAGTGTGTTGATTGAGCCAACAAGTGGGAA 322
|||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 180 AGAAGCTAAAGGTCTTATTAAACCAGGAGAGAGTGTGTTGATGGAGCCAACAAGTGGGAA 239
Query 323 CACTGGAGTTGGTTTAGCATTTACTGCAGCTGCAAAGGGCTATAAGCTTGTTATAACAAT 382
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 240 TACTGGAGTTGGTTTAGCATTTACTGCAGCTGCAAAGGGTTATAAGCTTGTTATTACAAT 299
Query 383 GCCAGCTTCAATGAGTATAGAGAGAAGAATCATTCTCTTAGCTTTTGGAGCTGAGTTGAT 442
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCCAGCTTCAATGAGTGTAGAGAGAAGAATCATTCTCTTAGCTTTTGGAGCTGAGTTGAT 359
Query 443 TCTTACTGATCCGGCTAAAGGTATGAAAGGTGCTGTTGCAAAGGCGGAGGAGATTTTGGC 502
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 TCTTACTGATCCGGCTAAAGGTATGAAAGGCGCTGTTGCAAAGGCGGAGGAGATTTTGGC 419
Query 503 GAAAACACCTAATGGTTATATGCTTCAACAGTTTGAGAATCCTGCTAATCCAAAGATCCA 562
|||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 420 GAAAACGCCTAACGGTTATATGCTTCAACAGTTTGAGAACCCTGCCAATCCAAAGATCCA 479
Query 563 TTATGAGACTACTGGACCTGAGATATGGAAAGGTGCTGGGAAGTATCTCAAGGAACAGAA 622
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTATGAGACTACAGGACCTGAGATATGGAAAGGTGCTGGGAAGTATCTCAAGGAACAGAA 539
Query 623 CACAAACATAAAGCTGTATGGTGTCGAGCCTGTTGAAAGCCCTATTCTGTCCGGTGGAAA 682
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 CAAAAACATAAAGCTGTATGGTGTCGAGCCTGTTGAAAGCCCTATTCTTTCCGGTGGAAA 599
Query 683 GCCAGGTCCCCACAAAATTCAAGGTATAGGTGCTGGTTTTATTCCAGGCATTTTGGATGT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCCAGGTCCCCACAAAATTCAAGGTATAGGTGCTGGTTTTATTCCAGGCATTTTGGATGT 659
Query 743 TGATCTTATAGATGAAGTTGTTCAGGTTTCAAGTGAAGAATCCATTGACATGGCAAGGCT 802
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 TGATCTTATAGATGAAGTTGTTCAGGTTTCAAGTGATGAATCCATTGACATGGCAAGGCT 719
Query 803 TCTTGCTAGGGAAGAGGGTCTGTTAGTGGGAATCTCATCTGGAGCAGCAGCTACTGCAGC 862
|||||| | ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 720 TCTTGCAAAGGAAGAGGGTCTGTTAGTGGGAATCTCATCTGGAGCAGCAGCTGCCGCAGC 779
Query 863 AATCAAACTTGCAAAGAGGCCAGAAAATGCTGGGAAGCTTATAGTGGCGGTGTTTCCGAG 922
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 AATCAAACTTGCAAAGAGGCCAGAAAATGCTGGGAAGCTTATAGTGGCGGTGTTCCCGAG 839
Query 923 TTTCGGGGAAAGATATCTATCGACTGTACTGTTTGATGCAGCAAGGAAAGAGGCAGAGAC 982
||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 TTTTGGGGAACGATATCTATCGACTGTACTGTTCGATGCAGCAAGGAAAGAGGCAGAGAC 899
Query 983 TATGACCTTTGAGCCCTGA 1001
|||||||||||||||||||
Sbjct 900 TATGACCTTTGAGCCCTGA 918
> Ahg493405 jgi|Araly1|493405|fgenesh2_kg.7__2838__AT4G14880.2
Length=1203
Score = 579 bits (313), Expect = 2e-164
Identities = 446/510 (87%), Gaps = 9/510 (2%)
Strand=Plus/Plus
Query 90 TCAGTGG-CTCCTAAAATCGCTAAAGATGTAACTGAACTAATAGGGAACACTCCATTAGT 148
||| ||| || ||| ||| ||||||||||| |||||| | || |||||||||||||| ||
Sbjct 62 TCA-TGGCCT-CTAGAATTGCTAAAGATGTGACTGAATTGATTGGGAACACTCCATTGGT 119
Query 149 GTATCTAAACAAAGTAGCT-AAAGATTGTGTTGGTCATGTTGCTGCTAAGCTTGAGATGA 207
|||| | ||||| || ||| || || |||||||||| |||||||||||||||||||||||
Sbjct 120 GTATTTGAACAATGTTGCTGAAGGA-TGTGTTGGTCGTGTTGCTGCTAAGCTTGAGATGA 178
Query 208 TGGAACCATGTTCTAGCGTCAAAGACAGGATTGGTTAT-AGTATGATTGCTGATGCAGAA 266
|||||||||| |||||||| |||||||||||||||| | || |||||| |||||||||||
Sbjct 179 TGGAACCATGCTCTAGCGTTAAAGACAGGATTGGTT-TCAGCATGATTTCTGATGCAGAA 237
Query 267 GCTAAAGGACTTATTAAACCGGGAGAGAGTGTGTTGATTGAGCCAACAAGTGGGAACACT 326
|| || ||||| ||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct 238 AAGAAGGGTCTTATCAAACCAGGAGAGAGTGTGCTGATTGAGCCAACAAGTGGAAACACT 297
Query 327 GGAGTTGGTTTAGCATTTACTGCAGCTGCAAAGGGCTATAAGCTTGTTATAACAATGCCA 386
|||||||| |||||||| || || ||||| |||||||| |||||| |||| || ||||||
Sbjct 298 GGAGTTGGGTTAGCATTCACGGCGGCTGCCAAGGGCTACAAGCTTATTATTACCATGCCA 357
Query 387 GCTTCAATGAGTATAGAGAGAAGAATCATTCTCTTAGCTTTTGGAGCTGAGTTGATTCTT 446
||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 358 GCTTCGATGAGTATTGAGAGAAGAATCATTCTCTTAGCTTTTGGAGTTGAGTTGGTT-TT 416
Query 447 A-CTGATCCGGCTAAAGGTATGAAAGGTGCTGTTGCAAAGGCGGAGGAGATTTTGGCGAA 505
| |||| || ||||| || |||||||||||| | ||||||||||| ||||||||||| ||
Sbjct 417 AACTGACCCAGCTAAGGGCATGAAAGGTGCTATCGCAAAGGCGGAAGAGATTTTGGCTAA 476
Query 506 AACACCTAATGGTTATATGCTTCAACAGTTTGAGAATCCTGCTAATCCAAAGATCCATTA 565
||| || |||||||| ||||| |||||||||||||| |||||||| || |||||||| ||
Sbjct 477 AACGCCCAATGGTTACATGCTCCAACAGTTTGAGAACCCTGCTAACCCTAAGATCCACTA 536
Query 566 TGAGACTACTGGACCTGAGATATGGAAAGG 595
||||||||||||||||||||||||||||||
Sbjct 537 TGAGACTACTGGACCTGAGATATGGAAAGG 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43155142044
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5