BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22740.1 Length=1384 Score E Sequences producing significant alignments: (Bits) Value Ahg479786 jgi|Araly1|479786|fgenesh2_kg.3__2487__AT3G22740.1 1766 0.0 > Ahg479786 jgi|Araly1|479786|fgenesh2_kg.3__2487__AT3G22740.1 Length=1147 Score = 1766 bits (956), Expect = 0.0 Identities = 1084/1147 (95%), Gaps = 3/1147 (0%) Strand=Plus/Plus Query 1 AACCATATGAATCTCACGATCAAAGATAATATCTC--A-TCATCTATATAGTATTTGTCT 57 ||||||||||||||||||||||||||||| ||||| | || ||||||||||| |||||| Sbjct 1 AACCATATGAATCTCACGATCAAAGATAACATCTCATATTCTTCTATATAGTACTTGTCT 60 Query 58 CGATATTAGAGACGTACACACTTTGTTTATACTCAAATCAATATGGGATCTTTCGTGAAA 117 || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 61 CGGTAATAGAGACGTACACACTTTGTTTATAGTCAAATCAATATGGGATCTTTCGTGAAA 120 Query 118 GAAGAAACGTCGTCGTTGATGACAGATTTTTTGGAGAAGTGCGGTGGTTATGCGGTGGTG 177 || |||||||||||||||||||| |||||||||||||| || || ||||||||||||||| Sbjct 121 GAGGAAACGTCGTCGTTGATGACGGATTTTTTGGAGAACTGTGGCGGTTATGCGGTGGTG 180 Query 178 GATGGAGGGTTTGCGACGGAGCTACAGCGCCACGGAGCTGATATCAATGATCCACTTTGG 237 || ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 181 GACGGAGGGTTTGCGACGGAGCTACAACGCCACGGGGCTGACATCAATGATCCACTTTGG 240 Query 238 AGTGCTAAGTGCCTTATTACTTCTCCTCACCTTGTTACAAAGGTGCACTTGGATTACCTT 297 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGTGCTAAGTGCCTCATTACTTCTCCTCACCTTGTTACAAAGGTGCACTTGGATTACCTT 300 Query 298 GAATCTGGAGCAAATATCATCATAACAGCATCTTACCAGGCGACGATACAAGGTTTTGTG 357 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || Sbjct 301 GAATCTGGAGCAAATATCATCATTACAGCATCTTACCAGGCGACGATACAAGGATTCGTA 360 Query 358 GCAAAAGGTCTATCGGTGGGAGAAGCAGAAAATTTACTTAGAAGGAGCGTTGAAATCACG 417 ||||||||| |||| ||||||||||| |||| ||||||||| |||||||||||||||||| Sbjct 361 GCAAAAGGTTTATCTGTGGGAGAAGCGGAAAGTTTACTTAGGAGGAGCGTTGAAATCACG 420 Query 418 TACGAGGCACGTGAGATTTTCTACAACAGATGCACCAAGGGTTCATGGGATTTCGCCTAC 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TACGAGGCACGTGAGATTTTCTACAACAGATGCACCAAGGGTTCATGGGATTTCGCCTAC 480 Query 478 GCTGGAAAAGCTTCCCGGAGACCAATTCTTGTCGCAGCTTCCGTTGGTAGCTATGGAGCT 537 || ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| Sbjct 481 GCCGGAAAAGCTTCCCGGCGACCTATTCTTGTTGCAGCTTCCGTTGGTAGCTATGGAGCT 540 Query 538 TATCTCGCTGACGGCTCCGAATACAGTGGGATATATGGAGATTCTGTGAGTAAGGAGACA 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TATCTCGCTGACGGCTCCGAATACAGTGGGATATATGGAGATTCTGTGAGTAAGGAGACA 600 Query 598 TTAAAGGATTTCCATAGAAGAAGAGTTCAAATCTTAGCAAAATCTGGAGCCGACCTAATA 657 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| | || Sbjct 601 TTAAAGGACTTCCATAGAAGAAGAGTTCAAATCTTAGCGAACTCTGGAGCCGATTTCATC 660 Query 658 GCATTCGAGACTATTCCAAATAAGCTCGAAGCAGAGGCTTATGCGGATCTTCTTGAGGAG 717 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 661 GCATTCGAGACTATTCCAAATAAGCTCGAAGCAGAGGCGTATGCGAATCTTCTTGAGGAG 720 Query 718 GAAGATATCGATATTCCGGCATGGTTCTCGTTCACTTCCAAGGACGGAGTCAGTGTGCCA 777 ||||| ||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||| Sbjct 721 GAAGACATCAATATTCCGGCATGGTTTTCGTTCACTTCAAAGGACGGAGTCACTGTGCCA 780 Query 778 CGAGGAGATTCAGTTGTAGAATGTGCGAAAGTGGCAGATTCATGCAAGAACGTGGTGGCC 837 ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 781 CGAGGAGATTCGGTTGTAGAATGTGCGAAAGTGGCAGATTCTTGCAAGAAAGTGGTGGCC 840 Query 838 ATTGGAATCAATTGTACTGCACCAAGATACATTCATGCTTTAATTATCTCCTTGCGCCAG 897 |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| Sbjct 841 ATTGGAATCAATTGTACTGCACCAAGATACATACATGATTTGATTATCTCCTTGCGCCAG 900 Query 898 ATGACACGCAAACCAATCGTTGTATACCCAAACAGCGGGGAAGTCTACGACGGTCTGAAC 957 |||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 901 GTGACCCGCAAACCGATCGTTGTGTACCCAAATAGCGGGGAAGTCTACGACGGTCTGAAC 960 Query 958 AAGAAATGGATTAAGTCAGAGGGAGAGTCAGAGGAGGATTTTGTGTCGTACGTGAGTAAA 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 AAGAAATGGATTAAGTCAGAGGGAGAGTCAGAGGAGGATTTTGTGTCGTACGTGAGTAAA 1020 Query 1018 TGGAGAGATGCAGGAGCTTCTCTGTTTGGAGGATGTTGTCGGACTACTCCAAACACCATC 1077 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TGGAGAGATGCAGGAGCATCTCTGTTTGGAGGATGTTGTCGGACTACTCCAAACACCATC 1080 Query 1078 AGAGCCATTGCTAAAGTTCTCTCCGACGAACCTTCTGCAGCATCAAAACCCAAATTCGGG 1137 |||||||||||||||||||||||||||||| || | ||||||||||||||||||||| || Sbjct 1081 AGAGCCATTGCTAAAGTTCTCTCCGACGAATCTCCCGCAGCATCAAAACCCAAATTCCGG 1140 Query 1138 CAATAGA 1144 || |||| Sbjct 1141 CAGTAGA 1147 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51809044203 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5