BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22750.1
Length=2092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930269 jgi|Araly1|930269|scaffold_302726.1 1947 0.0
Ahg946872 jgi|Araly1|946872|scaffold_703101.1 841 0.0
> Ahg930269 jgi|Araly1|930269|scaffold_302726.1
Length=1177
Score = 1947 bits (1054), Expect = 0.0
Identities = 1131/1169 (97%), Gaps = 1/1169 (0%)
Strand=Plus/Plus
Query 793 aagaaaaaaaGAGAGATGGAAACAAGAAACGAGACAAAAGCTTCACCGGAAAACAACCTC 852
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AAGAAAAAAAAAGAGATGGAAACAAGAAACGAGACAAAAGCTTCACCGGAAAACAACCTC 65
Query 853 AGAAACAGAGGAGCTGATGGAAACAATAGCAAGAAAGACATGATTTTCCGAGCTGATAAG 912
|||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 66 AGAAACAGAGGAGCTGTTGGAAACAACAGCAAGAAAGACATGATTTTTCGAGCTGATAAG 125
Query 913 ATTGATTTGAAGAATTTGGATATCCAGCTAGAGAAACATCTGAGTAGGGTTTGGTCAAGA 972
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 126 ATTGATTTGAAGAATTTGGACATCCAGCTAGAGAAACATCTGAGTAGGGTTTGGTCAAGA 185
Query 973 AGCATTGAGAAGCACCCTAAGCCTAAGGAGGAATGGGAAATTGAATTGGCTAAATTAGAG 1032
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 186 AGCATTGAGAAGCACCCTAAGCCTAAGGAGGAATGGGAAATTGAATTGGCTAAATTGGAG 245
Query 1033 ATGAGGAATGTCATTGCTCGTGGTGCTTATGGTATTGTCTACAAAGGCATATATGATGGT 1092
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 246 ATGAGGAATGTCATTGCTCGTGGTGCTTATGGTATTGTTTACAAAGGCATCTATGATGGT 305
Query 1093 CAAGATGTTGCTGTGAAAGTACTTGATTGGGGAGAAGATGGTTACGCGACAACGGCTGAG 1152
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 306 CAAGATGTTGCTGTGAAAGTGCTTGATTGGGGAGAAGATGGTTACGCGACAACGGCTGAG 365
Query 1153 ACATCTGCTCTACGTGCTTCATTTCGTCAAGAAGTTGCGGTTTGGCATAAGCTTGACCAT 1212
||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 366 ACATCCGCTTTACGTGCTTCATTTCGTCAAGAAGTTGCGGTTTGGCACAAACTTGACCAT 425
Query 1213 CCTAATGTCACAAGGTTTGTGGGAGCATCAATGGGAACAGCGAATTTGAAGATACCTTCA 1272
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 426 CCTAATGTCACAAGGTTTGTGGGAGCATCAATGGGAACAACGAATTTGAAAATACCTTCA 485
Query 1273 TCAGCTGAGACGGAGAACTCGTTGCCTCAACGAGCTTGTTGTGTCGTTGTGGAGTATATC 1332
||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 486 TCAGCTGAGACGGAGAATTCGTTGCCTCAGCGAGCTTGTTGTGTTGTTGTGGAGTATATT 545
Query 1333 CCTGGAGGAACTCTTAAGCAGTATTTGTTCCGAAACAGGCGAAAGAAACTCGCTTTTAAA 1392
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 546 CCTGGAGGAACTCTTAAGCAGTATTTGTTCCGTAACAGGCGAAAGAAACTCGCTTTTAAA 605
Query 1393 GTCGTGGTTCAACTCGCTCTCGATCTCTCCCGAGGGTTAAGTTATTTGCATTCAGAGAGG 1452
|||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 606 GTCGTGGTTCAACTCGCTCTCGATCTTTCTAGAGGGCTAAGTTATTTGCATTCAGAGAGG 665
Query 1453 ATTGTTCATCGCGATGTGAAAACAGAGAATATGCTTTTGGATTATCAGAGGAATCTAAAG 1512
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 ATTGTTCATCGCGATGTCAAAACAGAGAATATGCTTTTGGATTATCAGAGGAATCTAAAG 725
Query 1513 ATTGCTGATTTTGGGGTTGCTAGAGTTGAAGCTCAGAATCCAAAAGACATGACTGGAGAA 1572
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 ATTGCTGATTTTGGAGTAGCTAGAGTTGAAGCTCAGAATCCAAAAGACATGACTGGAGAA 785
Query 1573 ACTGGAACTCTTGGATACATGGCTCCAGAGGTTCTTGATGGCAAGCCATACAACAGAAGA 1632
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 786 ACTGGAACTCTTGGATACATGGCTCCAGAGGTTCTTGATGGTAAGCCATACAACAGAAGA 845
Query 1633 TGTGATGTTTACAGCTTTGGGATATGCTTGTGGGAGATTTATTGTTGTGATATGCCTTAT 1692
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TGCGATGTTTACAGCTTTGGGATATGCTTGTGGGAGATTTATTGTTGTGATATGCCTTAT 905
Query 1693 CCTGATCTCAGCTTTGCTGATGTTTCTTCTGCTGTTGTTCGTCAGAATCTGAGACCGGAT 1752
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 906 CCTGATCTCAGCTTTGCTGATGTTTCTTCTGCTGTTGTTCGTCAGAATTTGAGACCGGAT 965
Query 1753 ATTCCAAGATGTTGTCCAACAGCATTGGCGACCATAATGAAGAGATGTTGGGAAGCTAAT 1812
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 966 ATTCCAAGATGTTGTCCAACATCATTGGCGACCATAATGAAGAGATGTTGGGAAGCTAAT 1025
Query 1813 CCGGAGAAACGACCAGAGATGGAGGAAGTTGTGAGTTTGCTTGAAGCTGTCGACACCACC 1872
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1026 CCGGAGAAACGACCGGAGATGGAGGAAGTGGTGAGGTTGCTTGAAGCTGTCGACACCTCC 1085
Query 1873 AAAGGCGGTGGAATGATCCCGGAAGATCAGAGACCTGGCTGTTTCTGCTTTGTCTCTGGT 1932
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1086 AAAGGCGGTGGAATGATCCCGGAAGATCAGAGACCTGCCTGTTTCTGCTTTGTCTCTGGT 1145
Query 1933 CGTGGTCCCTAATTTTACCCCC-TCTCTC 1960
|||||||||||| ||||||||| ||||||
Sbjct 1146 CGTGGTCCCTAAATTTACCCCCCTCTCTC 1174
> Ahg946872 jgi|Araly1|946872|scaffold_703101.1
Length=1141
Score = 841 bits (455), Expect = 0.0
Identities = 890/1096 (81%), Gaps = 46/1096 (4%)
Strand=Plus/Plus
Query 874 AACAATAGCAAGAAAGACATGAT-TTTCCGAGCTGATAAGATTGATTTGAAGAATTTGGA 932
||||| | ||||||||| | ||| ||| ||||||||||||||||||||||||| ||| ||
Sbjct 52 AACAACATCAAGAAAGAGAAGATCTTT-CGAGCTGATAAGATTGATTTGAAGAGTTTAGA 110
Query 933 TATCCAGCTAGAGAAACATCTGAGTAGGGTTTGGTC-AAGAAGCATTGAGAAGCACCCT- 990
|| ||||| ||||||||| |||||||||||||||| | ||| | ||||| | | | |
Sbjct 111 TAGACAGCTTGAGAAACATTTGAGTAGGGTTTGGTCGAGGAATC-TTGAGGTGAATCTTA 169
Query 991 AAGCCTAAGGAGGAATGGGAAATTGAATTGGCTAAATTAG-AGATGAGGAATGTCATTGC 1049
||| ||||||| |||||||| ||||| |||||||| || | | | || ||||| |||||
Sbjct 170 AAG-CTAAGGAAGAATGGGATATTGATTTGGCTAAGTTGGCA-ACAAGTAATGTTATTGC 227
Query 1050 TCGTGGTGCTTATGGTATTGTCTACAAAGGCA-TATATGATGGTCAAGATGTTGCTGTGA 1108
||||||| ||||||||| |||||||||||| | | |||||||| ||||||||||| ||||
Sbjct 228 TCGTGGTACTTATGGTACTGTCTACAAAGGTACT-TATGATGGACAAGATGTTGCAGTGA 286
Query 1109 AAGTACTTGATTGGGGAGAAGATGGTTACGCGACAACGGCTGAGA-CATCTGCTCTA-CG 1166
|||| |||||||||| ||| ||||| | | |||||||| ||| || || | | ||
Sbjct 287 AAGTGCTTGATTGGGAAGATGATGGGAATGAAACAACGGCCAAGACCA-CTAC-AAATCG 344
Query 1167 TGCTTCAT-TT-CGTCAAGAAGTTGCGGTTTGGCATAAGCTTGACCATCCTAATGTCACA 1224
|| || | || ||||| ||||| | |||||||| || || ||||||| ||||||||
Sbjct 345 GGC-TC-TGTTCCGTCAGGAAGTCACTGTTTGGCACAAACTCAACCATCCGGATGTCACA 402
Query 1225 AGGTTTGTGGGAGCATCAATGGGAACAGCGAATTTGAAGATACCTTCATCAGCTGAGACG 1284
| |||||| ||||| || ||||||||| ||||| |||| ||| | ||||||||| |
Sbjct 403 AAGTTTGTTGGAGCGTCTATGGGAACAACGAATCTGAATATA-C--GATCAGCTGATTC- 458
Query 1285 GAGA-ACTCGTTGCCTCAACGAGCTTGTTGTGTCGTTGTGGAGTATATCCCTGGAGGAAC 1343
||| |||||||||||||| ||| |||||||| |||||||||||| | ||||| |||||
Sbjct 459 AAGAGGCTCGTTGCCTCAACAAGCGTGTTGTGTGGTTGTGGAGTATCTTCCTGGTGGAAC 518
Query 1344 TCTT-AAGCAGTATTTG-TTCCGAAACAGGCGAAAGAAACTCGCTTTTAAAGTCGTGGT- 1400
|| || || | ||| || || | | | | ||||||||||||||||||| | | ||
Sbjct 519 -ATTGAAACAACACTTGATT-CGTCATAAGAGCAAGAAACTCGCTTTTAAAG-C-T-GTC 573
Query 1401 -TC-AACTCGCTCTCGATCTCTCCCGAGGGTTAAGTTATTTGCATTCAGAGAGGATTGTT 1458
|| |||||||||| |||||| | || ||| || | |||||||| ||||||| ||||||
Sbjct 574 ATCAAACTCGCTCTTGATCTCGCGCGGGGGCTATGCTATTTGCACTCAGAGAAGATTGTG 633
Query 1459 CATCGCGATGTGAAAACAGAGAATATGCTTTTGGATTATCAGAGGAATCT-AAAGATTGC 1517
|| ||||||||||||||||||||||||||||||||| | | | |||| | ||| || ||
Sbjct 634 CACCGCGATGTGAAAACAGAGAATATGCTTTTGGATGCTAATAAGAATTTGAAA-ATAGC 692
Query 1518 TGATTTTGGGGTTGCTAGAGTTGAAGCTCAGAATCCAAAAGACATGACTGGAGAAACTGG 1577
|||||||| || || | || ||||||| ||||||||||||||||| |||||||| ||
Sbjct 693 GGATTTTGGAGTAGCGCGGGTGGAAGCTCTTAATCCAAAAGACATGACAGGAGAAACCGG 752
Query 1578 AACTCTTGGATACATGGCTCCAGAGGTTC-TTGATGGCAAGCCATACAACAGAAGATGTG 1636
|||||||||||||||||||| ||||| | |||| || ||||| ||||| ||||| || |
Sbjct 753 TACTCTTGGATACATGGCTCCTGAGGT-CATTGACGGTAAGCCTTACAATAGAAGGTGCG 811
Query 1637 ATGTTTACAGCTTTGGGATATGCTTGTGGGAGATTTATTGTTGTGATATGCCTTATCCTG 1696
||||||||||||||||||||||||| ||||| || || || || ||||||||||||||||
Sbjct 812 ATGTTTACAGCTTTGGGATATGCTTATGGGAAATCTACTGCTGCGATATGCCTTATCCTG 871
Query 1697 ATCTCAGCTTTG-CTGATGTTTCTTCTGCTGTTGTTCGT-CAGAATCTGAGACCGGATAT 1754
|||| ||||||| | ||||||||||| || ||||| | | || |||||||||||||||||
Sbjct 872 ATCTTAGCTTTGTC-GATGTTTCTTCCGCGGTTGT-CTTACATAATCTGAGACCGGATAT 929
Query 1755 TCCAAGATGTTGTCCAACAGCATTGGCGACCATAATGAAGAGATGTTGGGAAGCTAATCC 1814
|| ||||| ||||| || |||||||||||||||||||||| ||||||||| | |||||
Sbjct 930 ACCGAGATGCTGTCCGACTGCATTGGCGACCATAATGAAGACATGTTGGGATGGGAATCC 989
Query 1815 GGAGAAACGACCAGAGATGGAGGAAGTTGTGA-GTTTGCTTGAAGCTGTCGACACCACCA 1873
| ||||||| || |||||| ||||||| |||| | | |||||||| | | || |||| |
Sbjct 990 GCAGAAACGGCCGGAGATGAAGGAAGTGGTGAAGAT-GCTTGAAGGTATTGATACCAGTA 1048
Query 1874 AAGGCGGTGGAATGATCCCGGAAGATCAGAGACCTGGCTGTTTCTGCTTTGTCTCTGG-T 1932
||||||| |||||||| |||||||||||||| || |||||||||||||||| ||| || |
Sbjct 1049 AAGGCGGCGGAATGATACCGGAAGATCAGAGTCCGGGCTGTTTCTGCTTTG-CTCCGGCT 1107
Query 1933 CGTGGTCCCT-AATTT 1947
||||| || | |||||
Sbjct 1108 CGTGGACCTTGAATTT 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78694446170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5