BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22810.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930275 jgi|Araly1|930275|scaffold_302732.1 2218 0.0
Ahg497297 jgi|Araly1|497297|fgenesh2_kg.166__1__AT3G22810.1 2006 0.0
> Ahg930275 jgi|Araly1|930275|scaffold_302732.1
Length=1471
Score = 2218 bits (1201), Expect = 0.0
Identities = 1374/1455 (94%), Gaps = 21/1455 (1%)
Strand=Plus/Plus
Query 61 ttctctttctctctGT-AAAATGGAGAAACCAGTGTTTGCACCATGGCGTTCCGA-CCAA 118
|||||| ||||||||| |||||||| ||||||||| || |||||||||||||||| ||||
Sbjct 1 TTCTCTCTCTCTCTGTAAAAATGGAAAAACCAGTGCTTCCACCATGGCGTTCCGACCCAA 60
Query 119 GTTTTCCGGCCACCGGAGACACCATTAGAGCCGATGGAGTTTCTCTCTCGCTCCTGGAGC 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 -TTTTCCGGCCACCGGAGACACCATTAGAGCCGATGGAGTTTCTCTCTCGCTCTTGGAGT 119
Query 179 GTATCAGCTCACGAAGTCTCCAAAGCTCTCACTCCTTCTCAGCAACTCCTCTCAAAAGCC 238
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 120 GTTTCAGCTCACGAAGTCTCCAAAGCTCTCACTCCTTCTCAGCAAATCCTCTC-TAAGAA 178
Query 239 T-CAATCGAAAACACCACCGTCATTCTC---GAAG---AACCCATCGCCGCCGGCGAGAC 291
| ||||||||| |||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 179 TACAATCGAAAGCACCACCGTCATTCTCGAAGAAGAACAACCCATCACCGCCGGCGAGAC 238
Query 292 CGAAACGGAGGACAACAGCTTCGTCTCCGGAAACCCTTTCTCCTTCGCTTGCTCAGAAAC 351
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 TGAAACGGAGGAGAACAGCTTCGTCTCCGGAAACCCTTTCTCCTTCGCTTGCTCCGAAAC 298
Query 352 TTCTCAGATGGTCATGGATCGTATCTTATCTCAGTCTCAGGAAGTGTCGCCACGAACATC 411
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 TTCTCAGATGGTCATGGATCGTATCTTGTCTCAGTCTCAGGAAGTGTCGCCACGAACATC 358
Query 412 TGGTCGGCTTTCTCATAGCAGCGGTCCTCTCAATGGTTCTTTAACCGACAGTCCTCCGAT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGTCGGCTTTCTCATAGCAGCGGTCCTCTCAATGGTTCTTTAACCGACAGTCCTCCGAT 418
Query 472 TTCGCCGCATCAAGTCGACGACATTAAGCAATTTTGCCGATCAAACAACAATTTCAACTC 531
||| |||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 419 TTCACCGCATGAAGTCGACGACATTAAGCAATTTTGTCGATCAAACAATAACTTCAACTC 478
Query 532 TCAATACCGTTCAACGGGAACAACTCCGGGACCTATCACTGCAACAACTACACAGTCCAA 591
||||| |||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 479 TCAATTCCGTTCAACGGGAACAACTCCGGGACCTATAACGGCAACAACCACACAGTCCAA 538
Query 592 GACAGTTGGACGGTGGTTGAAAGACAGGAGGGAGAAAAAGAAGGAAGAGA-TGAGAGCAC 650
||| ||||||||||||||||||||| |||||||||||||||||||||||| | || ||||
Sbjct 539 GACGGTTGGACGGTGGTTGAAAGACCGGAGGGAGAAAAAGAAGGAAGAGACT-AGGGCAC 597
Query 651 ACAATGCTCAGATACATGCTGCTGTATCAGTAGCTGGTGTGGCAGCCGCGGTGGCTGCTA 710
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 598 ACAATGCTCAGATACATGCTGCTGTATCCGTTGCTGGTGTGGCAGCTGCGGTGGCTGCTA 657
Query 711 TCGCGGCTGCAACTGCTGCTTCGTCGAG-TGCTGGAAAAGATGAGAATATGGCTAAGACG 769
||||||||||||| |||||||||||||| | |||| |||||||||||||||||||| |||
Sbjct 658 TCGCGGCTGCAACCGCTGCTTCGTCGAGCT-CTGGGAAAGATGAGAATATGGCTAAAACG 716
Query 770 GATATGGCTGTGGCTTCTGCTGCAACACTTGTGGCTGCTCAATGTGTGGAAGCTGCTGAA 829
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 717 GATATGGCTGTGGCTTCTGCTGCAACACTTGTGGCTGCTCAATGTGTGGAGGCTGCTGAA 776
Query 830 GTTATGGGAGCTGAGAGGGATCATTTAGCTTCCGTTGTTAGTTCTGCTGTTAATGTTCGA 889
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 GTTATGGGAGCTGAGAGGGATCATTTAGCTTCTGTTGTTAGTTCTGCTGTTAATGTTCGA 836
Query 890 TCTGCGGGAGATATCATGACATTAACCGCTGGAGCAGCCACAGCGTTAAGAGGAGTGGCT 949
|| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 837 TCCGCCGGAGATATCATGACATTAACTGCTGGAGCAGCTACAGCGTTAAGAGGAGTGGCT 896
Query 950 ACATTGAAGGCTAGAGCTATGAAGGAGGTGTGGCACATTGCATCAGTTATTCCAATGGAT 1009
||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 ACATTGAAGGCGAGGGCGATGAAGGAGGTGTGGAACATTGCATCAGTTATTCCAATGGAT 956
Query 1010 AAAGGAATCAATCTCGGAGGTTGCAGCAATGTTAATGGTAACGG----G--AGCTATGTC 1063
||||||||||||| |||||||||||||||||||||||||||||| | ||| |||||
Sbjct 957 AAAGGAATCAATCCCGGAGGTTGCAGCAATGTTAATGGTAACGGTAATGGTAGCAATGTC 1016
Query 1064 AGCTCAAGCAGCAGTCATAGTGGCGAATTTCTAGTTGAGGATAATTTCTTGGGACATTGC 1123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGCTCAAGCAGCAGTCACAGTGGCGAATTTCTAGTTGAGGATAATTTCTTGGGACATTGC 1076
Query 1124 AATAGAGAATGGCTTGCTCGAGGTGGCCAACTTCTTAAACGCACCCGCAAAGGTGATCTT 1183
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1077 AACAGAGAATGGCTTGCTCGAGGTGGCCAGCTTCTTAAACGTACCCGCAAAGGTGATCTT 1136
Query 1184 CATTGGAAAATAGTTTCAGTTTACATAAACAGGCTAAATCAAGTTATATTGAAGATGAAG 1243
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1137 CATTGGAAAATAGTTTCTGTTTACATAAATAGGCTAAATCAAGTTATATTGAAGATGAAG 1196
Query 1244 AGCAGGCATGTAGGAGGGACCTTCACGAAGAAGAACAAAAATGTTGTGATTGATGTGATC 1303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1197 AGCAGGCATGTAGGAGGGACCTTCACAAAGAAGAACAAAAATGTTGTGATTGATGTGATC 1256
Query 1304 AAAAACGTTCAAGCTTGGCCAGGCCGCCATTTGCTGGAAGGAGGAGAGGATTTGAGATAC 1363
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AAAAACATTCCGGCTTGGCCAGGCCGCCATTTGCTGGAAGGAGGAGAGGATTTGAGATAC 1316
Query 1364 TTTGGGTTAAAGACGGTTCCGCGAGGGATTGTAGAATTTCAGTGCAAGAGCCAGAGAGAG 1423
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1317 TTTGGGTTAAAGACGGTTCCGCGAGGGATTGTAGAATTTGAGTGCAAGAGTCAGAGAGAG 1376
Query 1424 TATGAAATGTGGACACAAGGTGTCTCAAGGCTTATTGCTGTTGCTGCCGAGAGGAATAAC 1483
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1377 TATGAAATGTGGACACAAGGTGTCTCAAGGCTTCTTGCTGTTGCTGCCGAGAGGAATAAC 1436
Query 1484 AGATATAGGATATGA 1498
|||||||||||||||
Sbjct 1437 AGATATAGGATATGA 1451
> Ahg497297 jgi|Araly1|497297|fgenesh2_kg.166__1__AT3G22810.1
Length=1352
Score = 2006 bits (1086), Expect = 0.0
Identities = 1257/1337 (94%), Gaps = 21/1337 (2%)
Strand=Plus/Plus
Query 77 AAAATGGAGAAACCAGTGTTTGCACCATGGCGTTCCGA-CCAAGTTTTCCGGCCACCGGA 135
|||||||| ||||||||| || |||||||||||||||| |||| ||||||||||||||||
Sbjct 21 AAAATGGAAAAACCAGTGCTTCCACCATGGCGTTCCGACCCAA-TTTTCCGGCCACCGGA 79
Query 136 GACACCATTAGAGCCGATGGAGTTTCTCTCTCGCTCCTGGAGCGTATCAGCTCACGAAGT 195
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 80 GACACCATTAGAGCCGATGGAGTTTCTCTCTCGCTCTTGGAGTGTTTCAGCTCACGAAGT 139
Query 196 CTCCAAAGCTCTCACTCCTTCTCAGCAACTCCTCTCAAAAGCCT-CAATCGAAAACACCA 254
|||||||||||||||||||||||||||| ||||||| ||| | ||||||||| |||||
Sbjct 140 CTCCAAAGCTCTCACTCCTTCTCAGCAAATCCTCTC-TAAGAATACAATCGAAAGCACCA 198
Query 255 CCGTCATTCTC---GAAG---AACCCATCGCCGCCGGCGAGACCGAAACGGAGGACAACA 308
||||||||||| |||| |||||||| ||||||||||||| ||||||||||| ||||
Sbjct 199 CCGTCATTCTCGAAGAAGAACAACCCATCACCGCCGGCGAGACTGAAACGGAGGAGAACA 258
Query 309 GCTTCGTCTCCGGAAACCCTTTCTCCTTCGCTTGCTCAGAAACTTCTCAGATGGTCATGG 368
| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 259 GTTTCGTCTCCGGAAACACTTTCTCCTTCGCTTGCTCCGAAACTTCTCAGATGGTCATGG 318
Query 369 ATCGTATCTTATCTCAGTCTCAGGAAGTGTCGCCACGAACATCTGGTCGGCTTTCTCATA 428
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 319 ATCGTATCTTATCTCAGTCTCAAGAAGTGTCGCCACGAACATCTGGTCGGCTTTCTCATA 378
Query 429 GCAGCGGTCCTCTCAATGGTTCTTTAACCGACAGTCCTCCGATTTCGCCGCATCAAGTCG 488
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 379 GCAGCGGTCCTCTCAATGGTTCTTTAACCGACAGTCCTCCGATTTCACCGCATGAAGTCG 438
Query 489 ACGACATTAAGCAATTTTGCCGATCAAACAACAATTTCAACTCTCAATACCGTTCAACGG 548
||||||||||||||||||| ||||||||||| || ||||||||||||| |||||||||||
Sbjct 439 ACGACATTAAGCAATTTTGTCGATCAAACAATAACTTCAACTCTCAATTCCGTTCAACGG 498
Query 549 GAACAACTCCGGGACCTATCACTGCAACAACTACACAGTCCAAGACAGTTGGACGGTGGT 608
||||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||
Sbjct 499 GAACAACTCCGGGACCTATAACGGCAACAACTACACAGTCCAAGCCGGTTGGACGGTGGT 558
Query 609 TGAAAGACAGGAGGGAGAAAAAGAAGGAAGAGA-TGAGAGCACACAATGCTCAGATACAT 667
|||||||| |||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 559 TGAAAGACCGGAGGGAGAAAAAGAAGGAAGAGACT-AGGGCACACAATGCTCAGATACAT 617
Query 668 GCTGCTGTATCAGTAGCTGGTGTGGCAGCCGCGGTGGCTGCTATCGCGGCTGCAACTGCT 727
||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 618 GCTGCTGTATCCGTTGCTGGTGTGGCAGCTGCGGTGGCTGCTATCGCGGCTGCAACCGCT 677
Query 728 GCTTCGTCGAG-TGCTGGAAAAGATGAGAATATGGCTAAGACGGATATGGCTGTGGCTTC 786
||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 678 GCTTCGTCGAGCT-CTGGGAAAGATGAGAATATGGCTAAAACGGATATGGCTGTGGCTTC 736
Query 787 TGCTGCAACACTTGTGGCTGCTCAATGTGTGGAAGCTGCTGAAGTTATGGGAGCTGAGAG 846
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 737 TGCTGCAACACTTGTGGCTGCTCAATGTGTGGAGGCTGCTGAAGTTATGGGAGCTGAGAG 796
Query 847 GGATCATTTAGCTTCCGTTGTTAGTTCTGCTGTTAATGTTCGATCTGCGGGAGATATCAT 906
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 797 GGATCATTTAGCTTCTGTTGTTAGTTCTGCTGTTAATGTTCGATCCGCCGGAGATATCAT 856
Query 907 GACATTAACCGCTGGAGCAGCCACAGCGTTAAGAGGAGTGGCTACATTGAAGGCTAGAGC 966
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 857 GACATTAACTGCTGGAGCAGCTACAGCGTTAAGAGGAGTGGCTACATTGAAGGCGAGGGC 916
Query 967 TATGAAGGAGGTGTGGCACATTGCATCAGTTATTCCAATGGATAAAGGAATCAATCTCGG 1026
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 917 GATGAAGGAGGTGTGGAACATTGCATCAGTTATTCCAATGGATAAAGGAATCAATCCCGG 976
Query 1027 AGGTTGCAGCAATGTTAATGGTAACGG----G--AGCTATGTCAGCTCAAGCAGCAGTCA 1080
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 977 AGGTTGCAGCAATGTTAATGGTAACGGTAATGGTAGCAATGTCAGCTCAAGCAGCAGTCA 1036
Query 1081 TAGTGGCGAATTTCTAGTTGAGGATAATTTCTTGGGACATTGCAATAGAGAATGGCTTGC 1140
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1037 CAGTGGCGAATTTCTAGTTGAGGATAATTTCTTGGGACATTGCAACAGAGAATGGCTTGC 1096
Query 1141 TCGAGGTGGCCAACTTCTTAAACGCACCCGCAAAGGTGATCTTCATTGGAAAATAGTTTC 1200
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1097 TCGAGGTGGCCAGCTTCTTAAACGTACCCGCAAAGGTGATCTTCATTGGAAAATAGTTTC 1156
Query 1201 AGTTTACATAAACAGGCTAAATCAAGTTATATTGAAGATGAAGAGCAGGCATGTAGGAGG 1260
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 TGTTTACATAAATAGGCTAAATCAAGTTATATTGAAGATGAAGAGCAGGCATGTAGGAGG 1216
Query 1261 GACCTTCACGAAGAAGAACAAAAATGTTGTGATTGATGTGATCAAAAACGTTCAAGCTTG 1320
||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 1217 GACCTTCACAAAGAAGAACAAAAATCTTGTGATTGATGTGATCAAAAACATTCCGGCTTG 1276
Query 1321 GCCAGGCCGCCATTTGCTGGAAGGAGGAGAGGATTTGAGATACTTTGGGTTAAAGACGGT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1277 GCCAGGCCGCCATTTGCTGGAAGGAGGAGAGGATTTGAGATACTTTGGGTTAA-GACGGT 1335
Query 1381 TCCGCGAGGGATTGTAG 1397
|||||||||||||||||
Sbjct 1336 TCCGCGAGGGATTGTAG 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5