BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22840.1
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930279 jgi|Araly1|930279|scaffold_302736.1 569 9e-162
> Ahg930279 jgi|Araly1|930279|scaffold_302736.1
Length=592
Score = 569 bits (308), Expect = 9e-162
Identities = 353/375 (94%), Gaps = 2/375 (1%)
Strand=Plus/Plus
Query 336 CTCCTCCTCCTA-TGAAACCTAAGGTGAGCACAAAGTTTAGCGACTTGCTAGCGTTTAGC 394
|||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 205 CTCCTCCTCCTACT-AAACCTAAGGTGAGCACGAAGTTTAGCGATTTGCTAGCGTTCAGC 263
Query 395 GGTCCAGCACCAGAGAGGATTAACGGACGTTTAGCGATGGTTGGATTCGTTGCGGCGTTG 454
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 264 GGTCCAGCACCAGAGAGGATTAACGGACGCTTAGCTATGGTTGGATTCGTTGCGGCGTTG 323
Query 455 GCTGTCGAGCTATCCAAGGGTGAAAACGTTTTAGCTCAGATCTCCGACGGTGGCGTCTCA 514
||||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 324 GCTGTTGAGCTATCTAAGGGTGAAAACGTATTCGCTCAGATCTCCGACGGTGGCGTCTCA 383
Query 515 TGGTTCCTCGGTACAACAGCGATCTTGACACTTGCGTCGCTTGTGCCGCTTTTCAAGGGC 574
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 384 TGGTTCCTCGGTACGACGGCGATCTTGACACTTGCGTCGCTTGTGCCACTTTTCAAGGGC 443
Query 575 ATAAGCGTTGAGTCCAAGTCCAAAGGTATCATGACGTCAGACGCTGAGCTTTGGAACGGA 634
|||| || |||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 444 ATAACCGCCGAGTCCAAGTCCGATGGTATCATGACTTCAGACGCTGAGCTTTGGAACGGA 503
Query 635 CGTTTCGCGATGCTCGGTTTGGTCGCGTTGGCGTTCACTGAGTTCGTCAAAGGTGGGACA 694
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 504 CGTTTCGCCATGCTCGGTTTGGTCGCGTTGGCGTTCACTGAGTTCGTCAAGGGTGGGACA 563
Query 695 CTCGTCTAAGGAAAA 709
|||||||||||||||
Sbjct 564 CTCGTCTAAGGAAAA 578
Score = 274 bits (148), Expect = 8e-73
Identities = 179/194 (92%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 96 AGTAGTTCTAAGCTTTAGAAATGGCAACAGCATCGTTCAACATGCAATCAGTCTTCGCCG 155
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTAGTAATCAGCTTTAGAAATGGCAACAGCATCGTTCAACATGCAATCAGTCTTCGCCG 60
Query 156 GTGGATTAACCACTCGCAAGATCAACACCAACAAGCTTTTCTCCGCCGGTAGCTTCCCTA 215
||||||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 61 GTGGATTGACCACTCGCAAGATCAACACCAACAAGCTTTTCTTCGCCGGAACCTTCCCTA 120
Query 216 ACCTCAAGAGGAATTATCCGGTGGGAGTGAGATGCATGGCTGAGGGAG-GACCCACGAAT 274
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 121 GTCTCAAGAGGAATTATCCGGTGGGAGTGAGATGCATGGCTGAGGGAGAG-CCCAAAAAC 179
Query 275 GAAGACTCTTCACC 288
||||||||| ||||
Sbjct 180 GAAGACTCTGCACC 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32747585703
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5