BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22890.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479799 jgi|Araly1|479799|fgenesh2_kg.3__2500__AT3G22890.1 2429 0.0
Ahg493438 jgi|Araly1|493438|fgenesh2_kg.7__2871__AT4G14680.1 1158 0.0
> Ahg479799 jgi|Araly1|479799|fgenesh2_kg.3__2500__AT3G22890.1
Length=1596
Score = 2429 bits (1315), Expect = 0.0
Identities = 1509/1599 (94%), Gaps = 27/1599 (2%)
Strand=Plus/Plus
Query 1 ACTATAAACTCTATAAAAACCAATTTTCACTTCCAATTGAATTGGGAACAAACCAAATCT 60
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1 ACTATAAACTCTATAAAAACCAATTTTCATTTCCAATTGAATTGGTAACAAACCAAATCT 60
Query 61 CTATCTCTCTCCA-TT-AG-----AGCTTGAAGCAGCCA-TAGCCTAACAAAACCTTCAA 112
|| ||| |||| | || || ||||||||||||||| |||||||| ||||||||||
Sbjct 61 CTCTCT-TCTCTATTTGAGCCAAAAGCTTGAAGCAGCCATTAGCCTAA-GAAACCTTCAA 118
Query 113 CAATGGCTTCAATGGCTGCCGTCTTAAGCAAAACTCCATTCCTCTCTCAACCACTAACCA 172
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 119 CAATGGCTTCCATGGCTGCAATCTTAAGCAAAACTCCATTCCTCTCTCAACCACTCACCA 178
Query 173 AATCATCTCCAAACTCCGATCTCCCCTTCGCCGCGGTTTCCTTCCCTTCCAAATCCCTAC 232
|| ||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 179 AACCATCTCCAATCTCCGATCTCCCCTTCGCCGCCGTATCCTTTCCTTCCAAATCCCTAC 238
Query 233 GCCGCCGCGTA-GGATCAATCCGAGCCGGATTAATCGCTCCCGACGGTGGTAAGCTTGTA 291
|||||||| | ||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 239 GCCGCCGC-AACGGATCAATCCGAGCCGGCTTAATCGCGCCTGACGGTGGTAAGCTTGTA 297
Query 292 GAGCTCATCGTGGAAGAGCCAAAGCGGCGAGAGAAGAAACACGAGGCGGCGGATTTGCCA 351
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 298 GAGCTCATCGTGGAAGAGCCAAAGCGACGGGAGAAGAAACACGAGGCGGCGGAGCTGCCA 357
Query 352 CGTGTTGAGCTGACGGCGATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCA 411
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGTGTTGAGCTGACGACGATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCA 417
Query 412 AGTCCACTCGGAGGTTTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCG 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGTCCACTCGGAGGTTTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCA 477
Query 472 CTACGTCTTGACGACGGCTCCGTCGTTAACATGTCCGTGCCTATTGTTCTCGCTATTGAC 531
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 478 CTACGTCTTGACGACGGCTCCGTCGTTAATATGTCGGTGCCTATTGTTCTCGCTATTGAC 537
Query 532 GATGAACAAAAAGCACGTATCGGCGAGTCTACACGTGTCGCTCTTTTCAATTCCGATGGT 591
||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 538 GATGAGCAAAAAGCACGTATCGGCGAGTCTAAACGTGTCGCTCTTTTTGATTCCGATGGT 597
Query 592 AACCCCGTCGCTATCCTCAGCGATATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATA 651
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 AATCCCGTCGCTATCCTCAGCGACATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATA 657
Query 652 GCTAGAACATGGGGTACGACGGCTCCAGGTTTGCCTTACGTAGACGAGGCGATAACTAAT 711
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 658 GCTAGAACATGGGGTACGACGGCTCCAGGTTTGCCTTATGTAGATGAGGCGATAACTAAT 717
Query 712 GCTGGAAACTGGCTCATTGGGGGTGATCTTGAGGTTCTTGAGCCAGTGAAGTACAATGAT 771
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 718 GCTGGAAACTGGCTTATTGGGGGTGATCTTGAGGTTCTTGAGCCAGTTAAGTACAATGAT 777
Query 772 GGGCTTGATCGTTTCAGGCTTTCGCCTGCTGAGTTACGTAAAGAGTTGGAGAAGCGTAAT 831
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 GGGCTTGATCGTTTCAGACTTTCGCCTGCTGAGCTACGTAAAGAGTTGGAGAAGCGTAAT 837
Query 832 GCGGATGCGGTGTTTGCTTTCCAGCTGAGGAATCCTGTTCATAATGGTCATGCTCTTCTT 891
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 838 GCGGATGCTGTGTTTGCTTTCCAGCTGAGGAATCCGGTTCACAATGGTCATGCTCTTCTT 897
Query 892 ATGACTGATACTCGTAGGAGACTTCTTGAGATGGGTTACAAAAACCCTATTCTTTTGCTT 951
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 898 ATGACTGATACTCGTAGGAGACTTCTTGAGATGGGATATAAAAACCCTATCCTTTTGCTT 957
Query 952 CATCCGTTAGGTGGGTTTACAAAGGCTGATGATGTTCCTTTAGATTGGAGGATGAAGCAA 1011
||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||
Sbjct 958 CATCCGTTAGGAGGGTTCACAAAGGCTGATGATGTTCCTCTAGACTGGAGGATGAAGCAA 1017
Query 1012 CACGAGAAGGTTCTAGAGGATGGTGTTCTCGATCCGGAGACTACAGTGGTTTCGATATTC 1071
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1018 CACGAGAAGGTGCTAGAGGATGGTGTTCTTGATCCAGAGACTACAGTGGTTTCGATATTC 1077
Query 1072 CCGTCACCTATGCATTACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATC 1131
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CCGTCTCCTATGCATTACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATC 1137
Query 1132 AATGCTGGTGCTAACTTTTACATTGTGGGTCGTGATCCTGCTGGGATGGGTCATCCAGTA 1191
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1138 AATGCTGGTGCTAACTTTTACATTGTGGGTCGTGATCCAGCCGGGATGGGTCATCCAGTA 1197
Query 1192 GAGAAACGTGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGA 1251
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GAAAAACGTGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGA 1257
Query 1252 CTCGAACGACTCAACATCCTTCCTTTCAGGGTTGCTGCATATGACAAGACGCAAGGCAAG 1311
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1258 CTCGAACGACTCAACATCCTTCCATTCAGGGTTGCTGCATATGACAAGACACAAGGCAAG 1317
Query 1312 ATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATG 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATG 1377
Query 1372 CGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGCCCAGGTGGATGG 1431
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1378 CGCACATTGGCAAAGAACAACGAAAACCCTCCTGACGGTTTCATGTGCCCAGGTGGATGG 1437
Query 1432 AAAGTTCTGGTGGATTACTATGAGAGCTTGACTCCGGCGGGTAATGGTAGACTACCAGAA 1491
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1438 AAAGTTCTGGTGGATTACTATGAGAGCTTGACTCCAGCAGGTAATGGTAGACTACCAGAA 1497
Query 1492 GTGGTTCCGGT-GTA-A--GA---CAAAACTGT-TC-G-TT--T--CAAATTGTAACGTT 1537
||||||||||| | | | || ||||||||| || | || | ||||||||||||||
Sbjct 1498 GTGGTTCCGGTTGAAGACAGAAGACAAAACTGTCTCTGCTTCGTTTCAAATTGTAACGTT 1557
Query 1538 TGTGTTGTGAAGCC-TTGTAGCAACAATCATTGTTGTAT 1575
|||||||||||||| ||||||||||||||||||||||||
Sbjct 1558 TGTGTTGTGAAGCCCTTGTAGCAACAATCATTGTTGTAT 1596
> Ahg493438 jgi|Araly1|493438|fgenesh2_kg.7__2871__AT4G14680.1
Length=1590
Score = 1158 bits (627), Expect = 0.0
Identities = 1039/1235 (84%), Gaps = 40/1235 (3%)
Strand=Plus/Plus
Query 253 CGAGCCGGATTAATCGCTCCCGACGGTGGTAAGCTTGTAGAGCTCATCGTGGAAGAGCCA 312
||||| || ||||||| || || ||||| || |||||||| || | || |||||
Sbjct 172 CGAGCTGGCTTAATCGAGCCAGATGGTGGGAAACTTGTAGATCTTGTTGTATCGGAGCC- 230
Query 313 AAG-CGGCGAGAGAAGAAACACGAGGCGGCGGATTTGCC--ACGTGTTGAGCTGACGGCG 369
| | |||||||||||||||||||| |||||||||||||| | ||| || ||||||||
Sbjct 231 ACGACGGCGAGAGAAGAAACACGAAGCGGCGGATTTGCCGAAAGTG-AGA-TTGACGGCG 288
Query 370 ATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCAAGTCCAC-TCGGA-GGTT 427
||||| |||||||||||||||||||| || ||||| ||||| ||||| | || || ||||
Sbjct 289 ATTGATTTGCAATGGATGCATGTATTGAGTGAAGGTTGGGCTAGTCCTCTTC-GAGGGTT 347
Query 428 TCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCGCTAC-GTCTTGACGAC 486
| ||||| ||||| ||||||||||||||||||||||| || | ||| | |||||| ||
Sbjct 348 T-ATGAGGGAATCTGAGTTCCTCCAAACTCTTCATTTCAATTTGCT-CAATCTTGATGAT 405
Query 487 GGCTCCGTCGTTAACATGTCCGTGCCTATTGTTCTCGCTATTGACGATGAACAAAAAGCA 546
|| || || ||||| ||||| |||||||||||||| || ||||| ||| ||||||||||
Sbjct 406 GGATCTGTTGTTAATATGTCTGTGCCTATTGTTCTTGCGATTGATGATCAACAAAAAGC- 464
Query 547 CGT-ATCGGCGAGTCTACACGTGTCGCTCTT-TTCAATTCCGATGGTAACCCCGTCGCTA 604
| | || || || || | ||||||| ||||| || |||| |||| ||| || ||||||
Sbjct 465 CCTAATTGGTGAATCGAAACGTGTCTCTCTTGTT-GATTCTGATGATAATCCAATCGCTA 523
Query 605 TCCTCAGCGATATTGAGATTTATAAGCATCC-AAAGGAAGAAAGGATAGCTAGAACATGG 663
| |||| ||||||||||||||||| ||||| ||| || ||| |||| || ||||| |||
Sbjct 524 TTCTCAATGATATTGAGATTTATAAACATCCGAAA-GAGGAACGGATTGCGAGAACTTGG 582
Query 664 GGTACGACGGCTCCAGGTTTGCCTTACGTAGACGAGGCGATAACTAATGCTGGAAACTGG 723
|||||||| || || ||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 583 GGTACGACTGCACCGGGTTTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAAACTGG 642
Query 724 CTCATTGGGGGTGATCTTGAGGTTCTT-GAGCCAGTGAAGTACAATGATGGGCTTGATCG 782
|||||||| ||||||||||||||| || || || || |||||||||||||||||||||||
Sbjct 643 CTCATTGGTGGTGATCTTGAGGTT-TTAGAACCTGTTAAGTACAATGATGGGCTTGATCG 701
Query 783 TTTCAGGCTTTCGCCTG-CTGAGTTACGTAAAGAGTTGGAGAAGCGTAATGCGGATGCGG 841
||||||||||||||| | ||| | ||||| ||| | ||||||||| |||||||| |
Sbjct 702 TTTCAGGCTTTCGCC-GTTTGAACTGCGTAAGGAGCTAGAGAAGCGTGGCGCGGATGCTG 760
Query 842 TGTTTGCTTTCCAGCTGAGGAATCCTGTTCATAATGGTCATGCTCTTCTTATGACTGATA 901
| ||||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 761 TCTTTGCGTTCCAGCTTAGGAACCCGGTTCATAATGGACATGCTCTTCTTATGACTGATA 820
Query 902 CTCGTAGGAGACTTCTTGAGATGGGTTA-CAAAAACCCTATTCTTTTGCTTCATCCGTTA 960
|||||||||||||||||||||||||||| ||||| ||| || |||||||||||||| ||
Sbjct 821 CTCGTAGGAGACTTCTTGAGATGGGTTATCAAAA-CCCAATCCTTTTGCTTCATCCATTG 879
Query 961 GGTGGGTTTAC-AAAGGCTGATGATGTTCCTTTA-GATTGGAGGATGAAGCAACACGAGA 1018
|| |||||||| |||| | ||||||||||||||| | | || | ||||| || |||||||
Sbjct 880 GGAGGGTTTACGAAAG-CGGATGATGTTCCTTTAAGCT-GGCGAATGAAACAGCACGAGA 937
Query 1019 AGGT--T----CTAGAGGATGGTGTTCTCGATCCGGAGACTACAGTGGTTTCGATATTCC 1072
|||| | |||||||| |||||||| ||||| ||||| || |||||||| |||||||
Sbjct 938 AGGTAATAATGCTAGAGGACGGTGTTCTTGATCCAGAGACGACTGTGGTTTCTATATTCC 997
Query 1073 CGTCACCTATGCAT-TACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATC 1131
| || || |||| | || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 998 CATCTCCAATGC-TCTATGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGGATC 1056
Query 1132 AATGCTGGTGCTAACTTTTACATTGTGGGTCGTGATCCTGCTGGGATGGGTCATCCAGTA 1191
||||||||||||||||| |||||||||||| | ||||| ||||| ||||||||||| ||
Sbjct 1057 AATGCTGGTGCTAACTTCTACATTGTGGGTAGGGATCCAGCTGGAATGGGTCATCCTGTG 1116
Query 1192 GAGAAACGTGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGA 1251
|||||||||||||| || ||||||||||| || ||||||||||| |||||||| || |||
Sbjct 1117 GAGAAACGTGATCTGTATGATGCTGATCACGGGAAGAAAGTACTTAGCATGGCTCCTGGA 1176
Query 1252 CTCGAACGACTCAACATCCTTCCTTTCAGGGTTGCTGCATATGACAAGACGCAAGGCAAG 1311
||||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||
Sbjct 1177 CTCGAACGACTCAACATTCTTCCTTTCAGGGTTGCTGCTTACGATAAGACACAAGGCAAG 1236
Query 1312 ATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATG 1371
||||||||||| |||||| | ||| | || |||||||||||||| || ||||||||||||
Sbjct 1237 ATGGCTTTCTTTGATCCCACTAGGGCACAGGATTTCTTGTTCATTTCTGGCACTAAGATG 1296
Query 1372 CGCA-CATTGGCAAAGAACA-ACGAAAACCCGCCAGACGGTTTTATGTGCCCAGGTGGAT 1429
| | ||||||||||||||| | || ||||| ||||| || ||||||||||| || || |
Sbjct 1297 AG-AGCATTGGCAAAGAACAGA-GAGAACCCTCCAGATGGATTTATGTGCCCTGGAGGCT 1354
Query 1430 GGAAAGTTCTGGTGGATTACTATGAGAGCTTGACT 1464
|||| || || ||||||||||| || || ||||||
Sbjct 1355 GGAAGGTGCTTGTGGATTACTACGACAGTTTGACT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5