BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G23000.1

Length=1535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479810 jgi|Araly1|479810|fgenesh2_kg.3__2511__AT3G23000.1        2060    0.0  


> Ahg479810 jgi|Araly1|479810|fgenesh2_kg.3__2511__AT3G23000.1
Length=1342

 Score = 2060 bits (1115),  Expect = 0.0
 Identities = 1250/1315 (95%), Gaps = 9/1315 (1%)
 Strand=Plus/Plus

Query  50    CCGCCGCCATGGAATCACTTCC-CCAGCCGCAAAACCAATCATCTCCGGCAACAACTCCG  108
             |||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||
Sbjct  34    CCGCCGCCATGGAATCACTTCCTCC-GCCGCAAAATCAAACATCTCCGGCAACAACTCCG  92

Query  109   GCGAAGATC-CTCCTTGGGAAATACGAACTCGGTCGTCGTCTCGGTAGCGGAAGCTTCGC  167
             || || | | ||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct  93    GC-AAAAGCTCTCCTCGGAAAATACGAACTCGGTCGTCGACTCGGTAGCGGAAGCTTCGC  151

Query  168   GAAAGTCCATTTAGCTCGATCAATCGAATCCGACGAGCTCGTCGCCGTTAAAATCATCGA  227
             |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  152   GAAAGTTCATCTAGCTCGATCAATCGAATCCGACGAGCTCGTCGCCATTAAAATCATCGA  211

Query  228   GAAGAAGAAAACAATCGAATCCGGTATGGAACCAAGAATAATCAGAGAGATCGATGCGAT  287
             ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct  212   GAAGAAGAAAACAATCGAATCAGGCATGGAACCAAGAATAATCAGAGAGATCGATGCGAT  271

Query  288   GCGTCGTCTTCGTCATCATCCAAACATACTCAAGATCCATGAAGTTATGGCAACCAAATC  347
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  272   GCGTCGTCTTCGTCATCATCCAAACATACTTAAGATCCATGAAGTTATGGCAACCAAATC  331

Query  348   TAAGATCTATCTCGTAATGGAACTCGCTTCCGGTGGTGAACTTTTCTCAAAAGTCCTCCG  407
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  332   TAAGATCTATCTCGTAATGGAACTCGCTTCCGGTGGTGAACTTTTCTCTAAAGTCCTCCG  391

Query  408   TCGTGGACGTCTTCCTGAATCAACGGCGCGTCGTTACTTTCAACAACTCGCCTCCGCTCT  467
             |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  392   TCGTGGTCGTCTTCCTGAATCAACGGCGCGTCGTTACTTTCAACAACTAGCCTCCGCGCT  451

Query  468   TCGTTTCTCTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCTCAGAATCTACTCTT  527
             | | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  452   TAGATTCTCTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCACAGAATCTACTCTT  511

Query  528   AGATGAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAGCATCT  587
             |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  512   AGATCAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAACATCT  571

Query  588   ACAAAACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTATACAGCTCCGGAGGTTAT  647
              ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  572   CCAAAACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTACACAGCTCCGGAGGTTAT  631

Query  648   TTCACGGAGGGGATACGACGGAGCAAAAGCTGATGCGTGGTCTTGTGGTGTGATTTTGTT  707
             ||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  632   TTCGCGGCGAGGATACGACGGAGCGAAAGCTGATGCGTGGTCTTGTGGTGTGATTTTGTT  691

Query  708   TGTT-TTATTGGTTGGCGATGTTCCATTTGATGATTCGAATATCGCTGCGATGTATCGGA  766
             |||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  692   TGTTCTT-TTGGTTGGCGACGTTCCATTTGATGATTCGAATATCGCAGCGATGTATCGGA  750

Query  767   AGATTCATCGGAGAGATTATCGGTTTCCGAGCTGGATTTCGAAACAAGCTAAATCGATAA  826
             |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  751   AGATTCATCGGAGAGATTATCGATTTCCGAGCTGGATTTCGAAACAAGCGAAATCGATAA  810

Query  827   TCTATCAGATGTTAGATCCGAATCCAGTAACGAGGATGAGTATTGAAACAGTGATGAAAA  886
             |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  811   TCTATCAGATGTTAGATCCGAATCCAGTAACGAGGATGAGTATTGAAACAGTTATGAAGA  870

Query  887   CGAATTGGTTCAAGAAGTCTCTAGAGACTTCTGAGTTTCATCGTAACGTCTTTGATTCGG  946
             |||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||
Sbjct  871   CGAATTGGTTCAAGAAATCTCTAGAAACTTCTGAGTTTCATCGTAACATTTTTGATTCGG  930

Query  947   AAGTAGAGATGAAATCGAGTGTTAATTCGATTACTGCTTTTGATTTGATCTCGTTATCGT  1006
             ||   ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  931   AACCGGAGATGAAATCGAGTGTTAATTCGATTACTGCTTTCGATTTGATCTCGTTGTCGT  990

Query  1007  CGGGATTAGATCTTTCTGGATTGTTTGAGGCTAAGAAGAAGAAGGAGAGGAGATTCACGG  1066
             |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct  991   CGGGGTTAGATCTTTCTGGATTGTTTGAGGTTAAGAAGAAGAAGGAGAGGAGATTCACCG  1050

Query  1067  CGAAGGTTTCGGGTGTTGAAGTGGAGGAGAAGGCGAAGATGATTGGGGAGAAGTTAGGTT  1126
             |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct  1051  CGAAGGTTTCGGCTGTTGAAGTGGAGGAGAAAGCGAAGATGATTGGGGAGAATTTAGGTT  1110

Query  1127  ATGTAGtgaagaagaagatgatgaagaaggaaggagaagtgaaggttgttggattaggga  1186
             ||||||||||||||||||||| ||| | | ||||||||| ||||||||||||||||||||
Sbjct  1111  ATGTAGTGAAGAAGAAGATGAAGAA-A-G-AAGGAGAAGCGAAGGTTGTTGGATTAGGGA  1167

Query  1187  gaggaagaaCTGTGATTGTGGTGGAAGCAGTGGAGTTAACGGTGGATGTTGTGGTGGTTG  1246
             |||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  1168  GAGGAAGAACTGCGATTGTGGTGGAAGCGGTTGAGTTAACGGTGGATGTTGTGGTGGTTG  1227

Query  1247  AAGTGAAAGTTGTTGAAGGTGAAGAAGATGATTCACGGTGGTCTGATTTGATTACTGAGC  1306
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct  1228  AAGTGAAAGTTGTTGAAGGTGAAGAAGATGATTCACGGTGGTTTGATTTGATTACAGAGC  1287

Query  1307  TTGAAGATATAGTTCTTTCATGGCACAATGACATCATGTAAATAGATTGTGACtt  1361
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1288  TTGAAGATATAGTTCTTTCATGGCACAATGACATCATGTAAATAGATTGTGACTT  1342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57478179705


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5