BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23000.1 Length=1535 Score E Sequences producing significant alignments: (Bits) Value Ahg479810 jgi|Araly1|479810|fgenesh2_kg.3__2511__AT3G23000.1 2060 0.0 > Ahg479810 jgi|Araly1|479810|fgenesh2_kg.3__2511__AT3G23000.1 Length=1342 Score = 2060 bits (1115), Expect = 0.0 Identities = 1250/1315 (95%), Gaps = 9/1315 (1%) Strand=Plus/Plus Query 50 CCGCCGCCATGGAATCACTTCC-CCAGCCGCAAAACCAATCATCTCCGGCAACAACTCCG 108 |||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||||| Sbjct 34 CCGCCGCCATGGAATCACTTCCTCC-GCCGCAAAATCAAACATCTCCGGCAACAACTCCG 92 Query 109 GCGAAGATC-CTCCTTGGGAAATACGAACTCGGTCGTCGTCTCGGTAGCGGAAGCTTCGC 167 || || | | ||||| || |||||||||||||||||||| |||||||||||||||||||| Sbjct 93 GC-AAAAGCTCTCCTCGGAAAATACGAACTCGGTCGTCGACTCGGTAGCGGAAGCTTCGC 151 Query 168 GAAAGTCCATTTAGCTCGATCAATCGAATCCGACGAGCTCGTCGCCGTTAAAATCATCGA 227 |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 152 GAAAGTTCATCTAGCTCGATCAATCGAATCCGACGAGCTCGTCGCCATTAAAATCATCGA 211 Query 228 GAAGAAGAAAACAATCGAATCCGGTATGGAACCAAGAATAATCAGAGAGATCGATGCGAT 287 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 212 GAAGAAGAAAACAATCGAATCAGGCATGGAACCAAGAATAATCAGAGAGATCGATGCGAT 271 Query 288 GCGTCGTCTTCGTCATCATCCAAACATACTCAAGATCCATGAAGTTATGGCAACCAAATC 347 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 272 GCGTCGTCTTCGTCATCATCCAAACATACTTAAGATCCATGAAGTTATGGCAACCAAATC 331 Query 348 TAAGATCTATCTCGTAATGGAACTCGCTTCCGGTGGTGAACTTTTCTCAAAAGTCCTCCG 407 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 332 TAAGATCTATCTCGTAATGGAACTCGCTTCCGGTGGTGAACTTTTCTCTAAAGTCCTCCG 391 Query 408 TCGTGGACGTCTTCCTGAATCAACGGCGCGTCGTTACTTTCAACAACTCGCCTCCGCTCT 467 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 392 TCGTGGTCGTCTTCCTGAATCAACGGCGCGTCGTTACTTTCAACAACTAGCCTCCGCGCT 451 Query 468 TCGTTTCTCTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCTCAGAATCTACTCTT 527 | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 452 TAGATTCTCTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCACAGAATCTACTCTT 511 Query 528 AGATGAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAGCATCT 587 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 512 AGATCAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAACATCT 571 Query 588 ACAAAACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTATACAGCTCCGGAGGTTAT 647 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 572 CCAAAACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTACACAGCTCCGGAGGTTAT 631 Query 648 TTCACGGAGGGGATACGACGGAGCAAAAGCTGATGCGTGGTCTTGTGGTGTGATTTTGTT 707 ||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 632 TTCGCGGCGAGGATACGACGGAGCGAAAGCTGATGCGTGGTCTTGTGGTGTGATTTTGTT 691 Query 708 TGTT-TTATTGGTTGGCGATGTTCCATTTGATGATTCGAATATCGCTGCGATGTATCGGA 766 |||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 692 TGTTCTT-TTGGTTGGCGACGTTCCATTTGATGATTCGAATATCGCAGCGATGTATCGGA 750 Query 767 AGATTCATCGGAGAGATTATCGGTTTCCGAGCTGGATTTCGAAACAAGCTAAATCGATAA 826 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 751 AGATTCATCGGAGAGATTATCGATTTCCGAGCTGGATTTCGAAACAAGCGAAATCGATAA 810 Query 827 TCTATCAGATGTTAGATCCGAATCCAGTAACGAGGATGAGTATTGAAACAGTGATGAAAA 886 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 811 TCTATCAGATGTTAGATCCGAATCCAGTAACGAGGATGAGTATTGAAACAGTTATGAAGA 870 Query 887 CGAATTGGTTCAAGAAGTCTCTAGAGACTTCTGAGTTTCATCGTAACGTCTTTGATTCGG 946 |||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||| Sbjct 871 CGAATTGGTTCAAGAAATCTCTAGAAACTTCTGAGTTTCATCGTAACATTTTTGATTCGG 930 Query 947 AAGTAGAGATGAAATCGAGTGTTAATTCGATTACTGCTTTTGATTTGATCTCGTTATCGT 1006 || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 931 AACCGGAGATGAAATCGAGTGTTAATTCGATTACTGCTTTCGATTTGATCTCGTTGTCGT 990 Query 1007 CGGGATTAGATCTTTCTGGATTGTTTGAGGCTAAGAAGAAGAAGGAGAGGAGATTCACGG 1066 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 991 CGGGGTTAGATCTTTCTGGATTGTTTGAGGTTAAGAAGAAGAAGGAGAGGAGATTCACCG 1050 Query 1067 CGAAGGTTTCGGGTGTTGAAGTGGAGGAGAAGGCGAAGATGATTGGGGAGAAGTTAGGTT 1126 |||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1051 CGAAGGTTTCGGCTGTTGAAGTGGAGGAGAAAGCGAAGATGATTGGGGAGAATTTAGGTT 1110 Query 1127 ATGTAGtgaagaagaagatgatgaagaaggaaggagaagtgaaggttgttggattaggga 1186 ||||||||||||||||||||| ||| | | ||||||||| |||||||||||||||||||| Sbjct 1111 ATGTAGTGAAGAAGAAGATGAAGAA-A-G-AAGGAGAAGCGAAGGTTGTTGGATTAGGGA 1167 Query 1187 gaggaagaaCTGTGATTGTGGTGGAAGCAGTGGAGTTAACGGTGGATGTTGTGGTGGTTG 1246 |||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1168 GAGGAAGAACTGCGATTGTGGTGGAAGCGGTTGAGTTAACGGTGGATGTTGTGGTGGTTG 1227 Query 1247 AAGTGAAAGTTGTTGAAGGTGAAGAAGATGATTCACGGTGGTCTGATTTGATTACTGAGC 1306 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1228 AAGTGAAAGTTGTTGAAGGTGAAGAAGATGATTCACGGTGGTTTGATTTGATTACAGAGC 1287 Query 1307 TTGAAGATATAGTTCTTTCATGGCACAATGACATCATGTAAATAGATTGTGACtt 1361 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1288 TTGAAGATATAGTTCTTTCATGGCACAATGACATCATGTAAATAGATTGTGACTT 1342 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57478179705 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5