BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23070.1
Length=2901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930314 jgi|Araly1|930314|scaffold_302771.1 4093 0.0
Ahg330061 jgi|Araly1|330061|fgenesh1_pm.C_scaffold_7002288 774 0.0
> Ahg930314 jgi|Araly1|930314|scaffold_302771.1
Length=2666
Score = 4093 bits (2216), Expect = 0.0
Identities = 2547/2699 (94%), Gaps = 53/2699 (2%)
Strand=Plus/Plus
Query 58 TTTCTATGTGAATAAA-CCAACAATGGCGATGAAGCCCAGTCTCCATTTTTGCCCAACTA 116
||||| |||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 1 TTTCTCTGTGAATAAACCCATCAATGGCGATGAAACCCAGTCTCCATTTTTACCCAACTA 60
Query 117 CTGTCACGAAGAAGTTTGTCTACTCGTTTCAAAGCTCCTTCTGCTTCCGTTTCTTAAGGT 176
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 61 CTGTCACGAAGAAGTTTGTCTACTCGTTTCAAAGCTCCTTCTGCTCCCGTTTCATAAGGT 120
Query 177 ATAGTTCATCAATTTCACTTGGGTCTTGTAAAGGTGTTACCTTTAGTTCGAGAAATGATC 236
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct 121 ATAGTTCATCAATTTCAATTGGGTCTTGTAAAGGTGTTGTCTTTAGTTCGAGAAATTATC 180
Query 237 AAATTGCATCGAGGAGGTTTAGCTTTAGTAGGGATTGTAATAATGGTGTGTGGCTAGAGA 296
||||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 181 AAATTCCATCGAGGAGGTTTAGCTTTAGTAGGGATGGTAATAATGGTGAGTGGTTAGAGA 240
Query 297 ATTGGAATAGAATTCAGAAACGTAATCAACCTAAACCTCCAAAGGTAGTTGTGAATTATC 356
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 ATTGGAATAGAATTCAGAAACGTAATCAACCTAAACCACCAAAGGTAGTTGTGAATTATC 300
Query 357 GAAAAGAAGGGAGATTTTCTGGGTCGGAGATTGTGAGTGGTGATGATAATAGAAGTAGAG 416
|||||||| | || || |||||||||||||||||||||||| |||||||
Sbjct 301 GAAAAGAA--G-GA-----------GG-GATTGTGAGTGGTGATGATAATAGTAGTAGAG 345
Query 417 ATGGTGATGGTAGTACTATGGAGAAGATAGTGGAGAAATTGAAGAAATATGGATATAT-- 474
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 346 ATGGTGATGGTAGTACAATGGAGAAGATTGTGGAGAAATTGAAGAAGTATGGATATATGG 405
Query 475 ------G-GAGGAGGTTCAGAATAAGGAGATTGAACAAGAGAGAAGGATTGAGAAAGGAT 527
| ||||||||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 406 AGAAGGGTGAGGAGGTTCAGAGTAAAGAGATTGAACAAGAGAGAAGGATTGAGAAAGGGT 465
Query 528 CTGTGGAGGATATATTCTATGTTGAAGAAGGGAAGTTACCGAATACTAGAGGTGGATTCA 587
| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 466 CGGTGGAGGATATATTTTATGTTGAGGAAGGGAATTTACCGAATACTAGAGGTGGATTCA 525
Query 588 CTGAGGAATCGTTACTTGGTGGAGA-GAATGTCATTGGAAGTAATGGAGATGTTGGTTTT 646
|||||||||||||||||||| |||| | ||||| |||||||||||||||| |||||||||
Sbjct 526 CTGAGGAATCGTTACTTGGTAGAGATG-ATGTCTTTGGAAGTAATGGAGAAGTTGGTTTT 584
Query 647 CCTTGGGAGAAGATGAGTGCTAAGGAGAAGAAGGAGTTGGAAGCTGAGTGGACCGCAAAG 706
||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||
Sbjct 585 ACTTGGGAGAAGATGAGTGCCAAGGAGAAGAAGGAGTTGGAAGCAGAGTGGACTGCGAAG 644
Query 707 AAGGAGAATAGATACTCG-TTGGCGGAAATGACTCTTCCGGAATCAGAGCTAAGGAGGTT 765
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAGGAGAATAGATACTCGCTT-GCGGAAATGACTCTTCCGGAATCAGAGCTAAGGAGGTT 703
Query 766 GAGGAATTTGACGTTTAGAACAGCGAGCAAGATGAGGATTCGAGGTGGAGGTGTGACTCA 825
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 704 GAGGAATTTGACGTTTCGAACAGCGAGCAAGATGAGGATTCGGGGTGGAGGTGTGACTCA 763
Query 826 GGTGGCAGTGGATGCTATTAAGGAGAAGTGGAAAAGCGCAGAGATTGTGAGATTGAAGAT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GGTGGCAGTGGATGCTATTAAGGAGAAGTGGAAAAGCGCAGAGATTGTGAGATTGAAGAT 823
Query 886 TGAAGGAGCAAGCGCGCTTAACATGAGAAAGATGCATGAGATATTAGAGaaaaaaaCTGG 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TGAAGGAGCAAGCGCGCTTAACATGAGAAAGATGCATGAGATATTAGAGAAAAAAACTGG 883
Query 946 TGGTTTAGTGATTTGGAGGTCCGGGACTTCCATCTCTTTGTACAGAGGTGTCAGTTATGA 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TGGTTTAGTGATTTGGAGGTCCGGGACTTCCATCTCTTTGTACAGAGGTGTCAGTTATGA 943
Query 1006 GCTTCCATCAGGAAAATGGAACAAGCAAAGAAGAGAGGAGACGCCACCTGAAGCTGTAAT 1065
|||||||||||||||||||||||||||||||||||| |||||||||||| || | |
Sbjct 944 GCTTCCATCAGGAAAATGGAACAAGCAAAGAAGAGAAGAGACGCCACCT---TCT-TCCT 999
Query 1066 AGAGAACCATGACGAAACTACAACTATGGTGGATAAAAGTGATGAAAAAGTTCATCTTCC 1125
||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1000 ----TACC-T---GAAACTACAACTATGGTGGATAATAGTGATGAAAAAGTTCATCTTCC 1051
Query 1126 TCAATTAGAGCAGGAGACAACTAGTGTGGAAAAGAAAGACCAGACATCT---CCAGTAGT 1182
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1052 TCAATTAGAGCAGGAGACAACTAGTGTGGAAAAGAAAGACCAGACATCTCAACCAGAAGT 1111
Query 1183 AGAATATGAAGATGAACTTGATGAACTGTTAGATGATCTTGGTCCTAGGTTCATGGACTG 1242
|||||| ||||||||| ||||| |||||||||||| |||||||||||| |||||||||||
Sbjct 1112 AGAATACGAAGATGAAATTGATAAACTGTTAGATGGTCTTGGTCCTAGATTCATGGACTG 1171
Query 1243 GCCGGGAGATAATCCATTACCTGTAGATGCTGATTTGCTTCCAGGCGCCATTCCTGATTA 1302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1172 GCCGGGAGATAATCCATTACCTGTAGATGCTGATTTGCTTCCAGGCGCCATTCCTGGTTA 1231
Query 1303 TGAACCGCCTTTCAGGGTACTTCCTTATGGAGTAAGATCATCTCTGGGACCAAAGGAGGC 1362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 TGAACCACCTTTCAGGGTACTTCCTTATGGAGTAAGATCATCTCTGGGACCAAAGGAGGC 1291
Query 1363 AACAGCTTTGAGAAGACTTGCCAGATCTATTCCTCCACACTTTGCTTTAGGTCGAAGTAG 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 AACAGCTTTGAGAAGACTTGCCAGATCTATTCCTCCACACTTTGCTTTAGGTCGAAGTAG 1351
Query 1423 GCAGCTCCAAGGCTTGGCGACAGCAATGGTCAGGTTATGGGAAAAGAGTATGCTTGCAAA 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GCAGCTCCAAGGCTTGGCGACAGCAATGGTCAGGTTATGGGAAAAGAGTATGCTTGCAAA 1411
Query 1483 GATTGCTATTAAACGTGGCGTGCAATCAACTACCAGTGAGAGAATGGCTGAAGATCTCAA 1542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 AATTGCTATTAAACGTGGCGTGCAATCAACTACCAGTGAGAGAATGGCTGAAGATCTCAA 1471
Query 1543 GAAATTGACAGGAGGTATAATGCTCTCTAGGAATAAAGACTTCTTGGTTTTCTACAGAGG 1602
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1472 GAAATTGACAGGAGGTATAATGCTCTCTAGGAACAAAGATTTCTTGGTTTTCTACAGAGG 1531
Query 1603 AAAGAATTTTTTATCAAGAGAAGTAGCTGACGCATTGGTGGAGCAGGAGAGGTTTGTAAG 1662
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1532 AAAGAATTTTTTGTCACGAGAAGTAGCTGACGCATTGGTGGAGCAGGAGAGGTTTGCAAG 1591
Query 1663 GACTTTGCAAGACGAAGAAGAGCAGGCACGTTTAAGAGGTTCATCGGCTCTGATTGTCCC 1722
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1592 GACTTTGCAAGACGAAGAAGAACAGGCACGTTTGAGAGGTTCATCGGCTCTGATTGTCCC 1651
Query 1723 AAGTACTGAACCTGCTAATAAACTTGTTTCTGCTGGTACTCTTGGTGAAACTCTTGATGC 1782
| ||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 ATGTATTGAACCTGCGAAAAAACTTGTTTCTGCTGGTACTCTTGGTGAAACTCTTGATGC 1711
Query 1783 GACTGGTAAGTGGGGAAAGAATCTGGACGATGATGATCATTCAGACGAAGTGAAACAAGA 1842
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1712 GACTGGTAAGTGGGGAAAGAATCTGGACGATGATGATCATTCCGACGAAGTGAAACAAGA 1771
Query 1843 GGTTGAGATATTGAGACATGAGAATCTTGTCAGGAAACTGGAAAGGAAACTTGCTTTTGC 1902
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1772 GGTTGAGATATTGAGGCATGAAAATCTTGTCAGGAAGCTGGAAAGGAAACTTGCTTTTGC 1831
Query 1903 TGAGAGAAAGCTGTTGAAAGCCGAACGTGGTTTGGCTAAGGTGGAAGTGTGTCTTAAGCC 1962
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1832 TGAGAGAAAGCTGTTGAAAGCTGAACGTGGTTTGGCTAAGGTGGAAGAGTGTCTTAAGCC 1891
Query 1963 CGCAGAGCAGAGAGAAGATCCAGAAAGCATAACTGATGAAGAGAGATTTATGTTCCGCAA 2022
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 TGCGGAGCAGAGAGAAGACCCAGAAAGCATAACTGATGAAGAGAGATTTATGTTCCGCAA 1951
Query 2023 GCTTGGCTTGAAAATGAAAGCTTTCTTACTTCTAGGTAGGCGAGGAGTGTTTGATGGTAC 2082
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1952 GCTTGGCTTGAAAATGAAAGCTTTCTTACTTCTAGGTAGGCGAGGAGTTTTTGATGGTAC 2011
Query 2083 AGTGGAGAACATGCACTTGCATTGGAAATACAGAGAGTTGGTCAAAATTATTGTGAAGGC 2142
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2012 GGTGGAGAACATGCACTTGCACTGGAAATACAGAGAGTTGGTCAAAATTATTGTGAAGGC 2071
Query 2143 TAAAACTTTTGACGGTGTAAAGAAAGTGGCATTAGCCCTTGAAGCCGAGAGTGGTGGTAT 2202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 TAAAACTTTTGACGGTGTAAAGAAAGTGGCATTAGCCCTTGAAGCCGAGAGTGGTGGTAT 2131
Query 2203 CCTGGTTTCTATTGACAAGGTTACCAAAGGATATGCCATTATCGTGTACAGAGGACAAGA 2262
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2132 CCTGGTTTCTATTGACAAGGTTACCAAAGGATATGCCATTATCGTGTACAGAGGGCAAGA 2191
Query 2263 CTATAAGCGTCCTACCATGTTGAGACCGAAAAATCTTTTGACAAAGAGGAAGGCTTTAGC 2322
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2192 CTATAAGCGTCCTACCATGTTGAGGCCGAAAAATCTTTTGACAAAGAGGAAGGCTTTAGC 2251
Query 2323 GCGTTCCATTGAGCTCCAAAGACGCGAGGGTCTTCTGAAGCACATTTCTACGATGCAGGC 2382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2252 GCGTTCCATTGAGCTCCAAAGACGCGAGGGTCTTCTGAAGCACATTTCTACGATGCAGGC 2311
Query 2383 GAAAGCAAAACAGCTGAGAGCTGAAATTGAACAAATGGAGAAGGTAACAGACAAGGGTGA 2442
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2312 GAAAGCAGAACAGCTGAGAGTTGAAATTGAACAAATGGAGAAGGTAACAGACAAGGGTGA 2371
Query 2443 TGAAGAGTTATACAACAAGCTTGATATGGCTTATGCTTCTAGCGATGAGGAGACAGACGA 2502
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2372 TGAAGAGTTATACAACAAGCTTGATGTGGCTTATGCTTCTAGCGATGAGGAGACAGACGG 2431
Query 2503 AGAAGATGATGATGATGCATTTCCAGAGACGTATGCAGAAGGAGAAGATGGTGAAGAAGG 2562
|||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2432 AGAAGA--A-GATGATGCATTTCCAGAGACATATGCAGAAGGAGAAGATGGTGA-GATTC 2487
Query 2563 TGAGATTCTAGCAGGGGAACTATCTGAAACAGAGGATAAAGATTTGGATTCAAATGAATC 2622
| || | || ||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 2488 T-AG---C-AGAAGGGGAACTATCTGAAACAGAGGATGAAGACTGGGATTCAAATGAATC 2542
Query 2623 GGAAACCGGATTTGGTGATGATTCTGTACTTTTCGCAGAGGATCTTCATACGAAATCAGA 2682
|||||||||||||||||||||||||||||||| | |||||||||||||||| ||| ||||
Sbjct 2543 GGAAACCGGATTTGGTGATGATTCTGTACTTTACACAGAGGATCTTCATACAAAACCAGA 2602
Query 2683 AGATTTACCAAACAAGAAAGTTCGTCTGCAGCATCAGAGCTAATTGACGATAAGCGTAA 2741
||||||||| | ||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 2603 AGATTTACCGAGTGAGAAAGTTCATCTGCAGCATCAGAGCTAATTGAAGATAAACGTAA 2661
> Ahg330061 jgi|Araly1|330061|fgenesh1_pm.C_scaffold_7002288
Length=2760
Score = 774 bits (419), Expect = 0.0
Identities = 811/992 (82%), Gaps = 59/992 (6%)
Strand=Plus/Plus
Query 1656 TTGTAAGGACTTTGCAAGACGAAGAAGAGCAGGCACGTTTAAGAGGTTCATCGGCTCTGA 1715
||| |||||||||||||||||||| || | | || | | | || |||||||||||
Sbjct 1682 TTGCAAGGACTTTGCAAGACGAAG-AG-G-A-ACA-G--T--CACGTCCATCGGCTCTGG 1732
Query 1716 TTGTCCCAAGTACTGAACCTGCTAAT-AAA--CTTGTTTCTGCTGGTACTCTTGGTGAAA 1772
|||||||||||||| || |||||| ||| |||||||||||||||| |||||| ||||
Sbjct 1733 TTGTCCCAAGTACT-AA--AGCTAATCAAACCCTTGTTTCTGCTGGTAGTCTTGGAGAAA 1789
Query 1773 CTCTTGATGCGACTGGTAAGT-GGGGAAAGAATCTGGACGATGATGATCAT-TCAGACGA 1830
|||||||||| |||||||||| ||||||| |||||||| | ||||||||| | || ||
Sbjct 1790 CTCTTGATGCAACTGGTAAGTGGGGGAAA-AATCTGGATAACGATGATCATGT-GGAGGA 1847
Query 1831 AGTGAAACAAGAGGTTGAGATATTGAGA-CATG-AGAATCTTGTCAGGAAACTGGAAAGG 1888
| |||||||||||||||||| | ||||| | || | || ||||||||||| ||||||||
Sbjct 1848 AATGAAACAAGAGGTTGAGAGAATGAGATC-TGCA-AAACTTGTCAGGAAGTTGGAAAGG 1905
Query 1889 AAACTTGCTTTTGCTGAGAGAAAGCTGTTGAAAGCCGAACGTGG-TTTGGCTAAGGTGGA 1947
||||||||||||||||||| ||||||| ||||||| ||||| || ||| |||||||||||
Sbjct 1906 AAACTTGCTTTTGCTGAGAAAAAGCTGCTGAAAGCTGAACG-GGCTTTAGCTAAGGTGGA 1964
Query 1948 AGTGTGTCTTAAGCCCGCAGAGCAGAGAGA-AGATCC-AGAAAGCATAACTGATGAAGAG 2005
| | ||| ||||| |||||||||||| | ||| || || |||||||||| ||||||
Sbjct 1965 GGAATCTCTGAAGCCAGCAGAGCAGAGA-ACAGA-CCTTGAGGGCATAACTGAGGAAGAG 2022
Query 2006 AGATTTATGTTCCGCAAGCTTGGCTTGAAAATGAAAGCTTTCTTACTTCTAGGTAGGCGA 2065
||||||||||||| ||||| || ||||| |||||||||||||||||||| ||| | ||
Sbjct 2023 AGATTTATGTTCCAAAAGCTCGGATTGAAGATGAAAGCTTTCTTACTTCTTGGTCGAAGA 2082
Query 2066 GGAGTGTTTGATGGTACAGTGGAGAACATGCACTTGCATTGGAAATA-CAGAGAGTTGGT 2124
|| ||||||||||| || || ||||||||||||||||| |||||||| | | ||| || |
Sbjct 2083 GGGGTGTTTGATGGGACTGTAGAGAACATGCACTTGCACTGGAAATATC-GGGAGCTGAT 2141
Query 2125 CAAAATTATTGTGAAGGCTAAAACTTTTGACGGTGTAAAGAAAGTGGCATTAGCCCTTGA 2184
||| ||| |||| |||||||||| ||| || |||| |||||||||||| | ||||||||
Sbjct 2142 CAAGATTCTTGTAAAGGCTAAAAGTTTAGAGGGTGCGAAGAAAGTGGCAATGGCCCTTGA 2201
Query 2185 AGCCGAGAGTGGTGGTATCCTGGTTTCTATTGACAAGGTTACCAAAGGATATGCCATTAT 2244
|||||||||||| ||||||||||||||| ||||||| || ||||||| |||||| | ||
Sbjct 2202 AGCCGAGAGTGGAGGTATCCTGGTTTCTGTTGACAAAATTTCCAAAGGGTATGCCGTAAT 2261
Query 2245 CGTGTACAGAGGACAAGACTATAAGCGTCCTACCATGTTGAGACCGAAAAATCTTTTGAC 2304
|||||| |||||| ||||||||||||||||||||| |||||| || ||||| || |||||
Sbjct 2262 CGTGTATAGAGGAAAAGACTATAAGCGTCCTACCACGTTGAGGCCTAAAAACCTCTTGAC 2321
Query 2305 AAAGAGGAAGGCTTTAGCGCGTTC-CATTGAGCTCCA-AAGACGCGAGGGTCTTCTGAAG 2362
||||||||| ||||| || ||||| | |||||||||| || ||| |||| |||| | ||
Sbjct 2322 AAAGAGGAAAGCTTTGGCACGTTCTC-TTGAGCTCCAGAA-ACGTGAGGCTCTTATTAAA 2379
Query 2363 CACATTTCTACGATGCAGGCGAAAGCAAAACAGCTGAGAGCTGAAATTGAACAAATGGAG 2422
|||||| || | ||| ||| | || | |||||||||||||||||||||||| ||||
Sbjct 2380 CACATTGAGGCGGTACAGACGAGATCAGAGCAGCTGAGAGCTGAAATTGAACAAGTGGA- 2438
Query 2423 A-AGGTAACAGACAAGGGTGATGAAGAGTTATACAACAAGCTTGATATGGCTTATGCTTC 2481
| |||| ||||||||| ||||||| ||||||| |||||||||| ||||||||| ||||
Sbjct 2439 ACTTGTAAAAGACAAGGGAGATGAAGCGTTATACGACAAGCTTGACATGGCTTATTCTTC 2498
Query 2482 TAGCGATGAGGAGACAGACGAAGA-AGAT---GATGATGATG-CAT-T-TCCAGAGACGT 2534
| ||||||||||| || ||| | |||| || || |||| ||| | | ||| || |
Sbjct 2499 T---GATGAGGAGACCGAAGAA-ACAGATGGAGAGGAAGATGACATGTATTTAGATACAT 2554
Query 2535 ATGCAGA--A-GGAGAAGATGGTGAAGAAGGTGAGATTCTAG-C-AGGGGAAC-T-ATCT 2587
| | ||| | |||||||||||||||||||||||||||| || | | ||| | | ||||
Sbjct 2555 ACGAAGACGAGGGAGAAGATGGTGAAGAAGGTGAGATTC-AGGCCAAGGGTTCATTATCT 2613
Query 2588 GAAACAGAGGATAAAGATTTGGATTCAAATGA 2619
|||||||| | | ||||||| |||| ||||
Sbjct 2614 GAAACAGATGTTG--GATTTGG-TTCAGATGA 2642
Score = 721 bits (390), Expect = 0.0
Identities = 1019/1305 (78%), Gaps = 114/1305 (9%)
Strand=Plus/Plus
Query 293 GAGAATTGGAATAGAATTCAGAAAC-GTAATCAACCTAAACCTCCAAAGGTAGTTG-TGA 350
|||||||||||||||| |||| | | |||||| || |||| ||||||||| || |||
Sbjct 196 GAGAATTGGAATAGAAACCAGAGGCAG-AATCAATTTAGACCTTCAAAGGTAG-TGTTGA 253
Query 351 ATTATCGAAAAGAAGGGAGATTTTCTGG--GTCGGAGATTGTGAGTGGT--GATGA-TAA 405
|| ||||||||||| ||| ||||| || | |||| || |||||||| || | ||
Sbjct 254 ATCGTCGAAAAGAAGAGAGGTTTTC-GGATTTAGGAG-TTATGAGTGGTGAGAACAGTAG 311
Query 406 TAGAAGTA--GA-GATGGTGATGGT---AGTACTATGGAGAAGATAGTGGAGAAATTGAA 459
| |||||| || | ||||| |||| ||||| ||||||||||| || ||||| |||||
Sbjct 312 TCGAAGTAGTGATGTTGGTGGTGGTGGGAGTACAATGGAGAAGATTGTTGAGAAGTTGAA 371
Query 460 GAAA-TATGGATATATGGA-G--G---AGGTTC-AGAATAAGG-AGATTGAACAAGAGAG 510
||| ||||||| | |||| | | || ||| || |||||| || |||||||||||||
Sbjct 372 -AAAGTATGGATTTGTGGATGATGATCAGTTTCAAG-ATAAGGAAG-TTGAACAAGAGAG 428
Query 511 AAGGATTGA-GAAAGGATCTGTGGAGGATATATTCTATGTTGAAGAAGGGAAGTTACCGA 569
||| ||||| |||||| || |||||||||| |||||||| | ||| ||| | |
Sbjct 429 AAGAATTGAGGAAAGG-TCGGTGGAGGATAGATTCTATG-T--CGAA--GAA---A--G- 476
Query 570 ATACTAGAGGTGGATTCACTGAGGAATCGTTACTTGGTGGAGAGAATGTCATTGGAAGTA 629
| |||||||||| | | |||||||| | || | | | | ||| ||||| | |
Sbjct 477 --A--AGAGGTGGATCCTCGGAGGAATCACCA-TT--T-G-GTG--TGT--TTGGAGGGA 523
Query 630 ATGGAGATGTT-GGTTTTCCTTGGGAGAAGATGAGTGCTAAGGAGAAGAAGGAGTTGG-- 686
|| || | ||| | ||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 524 AT-GA-A-GTTAAG-TTTCCTTGGGAGAAGGTGAGTTCTATGGAGAAGAAGGAGTTGGTA 579
Query 687 AA-GCTGAGTGGACCGCAAAGAAGGAGAATAGATACTCGTTGGCGGAAATGACTCTTCCG 745
|| | |||||||| || |||||||||| |||||||| ||||||||| | ||||||| ||
Sbjct 580 AATGGAGAGTGGACAGCGAAGAAGGAGAGTAGATACTTGTTGGCGGAGAGGACTCTTTCG 639
Query 746 GAATCAGAGCT-AAGGAGGTTGAGGAATTTGACGTTTAGAACAG-CGAGCAAGATGAGGA 803
||||| ||||| || ||||||||||| ||| |||| || | | ||| ||||||| ||
Sbjct 640 GAATCTGAGCTGAA-TCGGTTGAGGAATGTGATGTTTCGAGC-GAAGAGTAAGATGA-GA 696
Query 804 -TT-CGAGGTGGAGGTGTGACTCAGG-TGGCAGTGGATGCTATTAAGGAGAAGTGGAAAA 860
|| || |||| |||||| ||||||| | | || ||||| ||| ||||||||||||| |
Sbjct 697 GTTACG-GGTGCAGGTGTTACTCAGGCT-GTGGTAGATGCAATTCAGGAGAAGTGGAAGA 754
Query 861 GCGCAGAGATTGTGAGA-TTGAAGATTGAAGGAGCAAGCGCGCTTAACATGAGAAAGATG 919
|| |||||||||||||| || ||||||||||||||||| || || |||||||||| ||||
Sbjct 755 GCTCAGAGATTGTGAGACTT-AAGATTGAAGGAGCAAGTGCCCTAAACATGAGAAGGATG 813
Query 920 CATGAGATATTAGAGaaaaaaaCTGGTGGTTTAGTGATTTGGAGGTCCGGGACTTCCATC 979
|||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||||
Sbjct 814 CATGAGATATTAGAGAGAAAAACTGGTGGTTTGGTGATTTGGAGGTCAGGAACTTCCATC 873
Query 980 TC-TT-T----GTACAGAGGTGTCAGTTATGA-GCTTCCATCA-GGAAAATGGAACAAGC 1031
| || | |||| ||||| ||| || | | | |||| |||| || || |||||
Sbjct 874 GCATTGTACAATTACAAAGGTGGCAG-TAACAGGGATGGATCAGGGAATAT-GATCAAGC 931
Query 1032 -AA-AGA-AG-AGAGGAGACGCCACCTGAAGCTGTAATAGAGAACCATGACGAAACTACA 1087
|| | | || |||| ||| | || | || || | ||| | ||| || ||||
Sbjct 932 GAATATACAGAAGAGCAGA-G--ACAT--TGCCGT-CTTCCTTACC-T-ACG-AA-TACA 981
Query 1088 ACTATGGTGGATAAAAGTGATGAAAAAGTTCATCTTCCTCAATTAGAGCAGGAGACAACT 1147
| || |||||| |||||| | || ||| ||| ||||||| ||||| ||||| ||||
Sbjct 982 AGTACAGTGGATCAAAGTGTTCAACTAGTGCATTTTCCTCAGCTAGAGAAGGAGCCAAC- 1040
Query 1148 AG-TGTGGAAAAGAAAGACCA-GACATCT-C-C-AGTAGTAGAATATGAAGATGAACTTG 1202
| ||||| ||| ||||| || ||||||| | | || ||||||||||||||||||| |
Sbjct 1041 CGTTGTGGGAAATAAAGA-CACGACATCTCCACAAGAAGTAGAATATGAAGATGAAATAA 1099
Query 1203 ATGAACTGTTAGATGATCTTGGTCCTAGGTTCATGGACTGGCCGGGAGATAATCCATTAC 1262
||||||||||||| | ||||||||| ||| || ||||||| ||||| | |||| ||||
Sbjct 1100 ATGAACTGTTAGAGGGCCTTGGTCCTCGGTACACAGACTGGCAGGGAGGTTATCCGTTAC 1159
Query 1263 CTGTAGATGCTGATTTGCTTCCAGGCG-CCATTCCTGATTATGAACCGCCTTTCAGGGTA 1321
|||| ||||||||||||||||| || | | |||||| ||||||||| ||||| ||||||
Sbjct 1160 CTGTTGATGCTGATTTGCTTCCTGG-GATCGTTCCTGGTTATGAACCCCCTTTTAGGGTA 1218
Query 1322 CTTCCTTATGGAGTAAGATCATCTCTGGGACCAAAGGAGGCAACAGCTTTGAGAAGACTT 1381
|||||||||||||| |||||| |||||||| |||||||||| || |||| |||||| ||
Sbjct 1219 CTTCCTTATGGAGTGAGATCAACTCTGGGAACAAAGGAGGCTACCTCTTTAAGAAGAATT 1278
Query 1382 GCCAGA-TCTATTCCTCCACACTTTGCTTTAGGTCGAAGTAGGCAGCTCCAAGGCTTGGC 1440
|||| | | | ||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1279 GCCACAGT-TCTTCCTCCACACTTTGCTTTAGGTCGAAGTAGACAGCTGCAAGGGTTGGC 1337
Query 1441 GACAGCAATGGTCAGGTTATGGGAAAAGAGTATGCTTGCAAAGATTGCTATTAAACGTGG 1500
||||| ||||| | ||||||| |||||||| || |||| ||| |||| ||||||| ||
Sbjct 1338 AACAGCCATGGTTAAGTTATGGCAAAAGAGTTTGATTGCCAAGGTTGCCCTTAAACGGGG 1397
Query 1501 CGTGCAA-TCAACTACCAGTGAGAGAATGGCTGAAGATC-TCAAG 1543
|| ||| | | ||||||| |||||||||||||| || | |||||
Sbjct 1398 TGTACAACTGA-CTACCAGCGAGAGAATGGCTGAGGA-CATCAAG 1440
Score = 215 bits (116), Expect = 2e-54
Identities = 161/183 (88%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 1546 ATTGACAGGAGGTATAATGCTCTCTAGGAATAAAGACTTCTTGGTTTTCTACAGAGGAAA 1605
|||||| |||||||| ||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1482 ATTGACTGGAGGTATGCTGCTCTCGAGGAACAAAGATTTCTTGGTTTTCTACAGAGGAAA 1541
Query 1606 GAATTTTTTATCAAGAGAAGTAGCTGACGCATTGGTGGAGCAGGAGAGGTTTGTAAGGAC 1665
||||||||| ||| |||||||||||| ||||| ||||| |||||||| ||||||||||
Sbjct 1542 GAATTTTTTGTCACTAGAAGTAGCTGAAGCATTAATGGAGAAGGAGAGGCTTGTAAGGAC 1601
Query 1666 TTTGCAAGACGAAGAAGAGCAGGCACGTTTAAGAGGT-TCATCGGCTCTGATTGTCCCAA 1724
||||||||||||||| || || |||||| |||| || |||||||||||| |||||||||
Sbjct 1602 TTTGCAAGACGAAGAGGAACAAGCACGTCTAAG-GGCATCATCGGCTCTGGTTGTCCCAA 1660
Query 1725 GTA 1727
|||
Sbjct 1661 GTA 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109509454375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5