BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23170.1
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479829 jgi|Araly1|479829|fgenesh2_kg.3__2530__AT3G23170.1 1070 0.0
> Ahg479829 jgi|Araly1|479829|fgenesh2_kg.3__2530__AT3G23170.1
Length=735
Score = 1070 bits (579), Expect = 0.0
Identities = 691/743 (93%), Gaps = 16/743 (2%)
Strand=Plus/Plus
Query 26 TCTAAAAATCTAAACTTTAACCTTTTTTCTCGGAACACCACAAATCTCATTTTTAGC--T 83
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TCTAAAAATCGAAACTTTAACCTTTTTTCTCGGAACACCACAAATCTCATTTTTAGCTTT 60
Query 84 TTTTCCGATTCCAAATCTTTTTGCTTATTTAGTCTTCTTCAAGAACTCGA-TTTCTTTCG 142
|||| |||||||||||| ||| |||||||||||||||||||||||||| |||| ||||
Sbjct 61 TTTTTCGATTCCAAATC---TTGATTATTTAGTCTTCTTCAAGAACTCGATTTTCGTTCG 117
Query 143 CGTTTATGTCGACGACGATGAAGAGACAGGGCTGCAGCTCAGATTCCGGTGATCTACGGC 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGTTTATGTCGACGACGATGAAGAGACAGGGCTGCAGCTCAGATTCCGGTGATCTACGGC 177
Query 203 GGCAGCCCAGTCGTCTACTAAAACGACCCCCGGCGTTAAAAATCGTTCCGGCGACTCCGG 262
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 178 GGCAGCCCAGTCGTCTACAAAAACGACCTCCGGCTTTAAAAATCGTTCCGGCGACTCCGG 237
Query 263 CGGCGAATAACTGGAATACGGCTATACCTCTCCTCTCGCCGTTAGCTCTTTCTCCCGAAT 322
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 238 CGGCGAATAACTGGAAAACGGCTATACCTCTCCTCTCGCCGTTAGCTCTTTCTCCTGAAT 297
Query 323 CATCACCGGTAGACCAACCACCGGTTGAGAAAAATCAGTCGACGGCGGTGGCGGTTGAGA 382
|||||||||| || ||||||||||||||||| |||| | |||||| |||||||||||
Sbjct 298 CATCACCGGTCGAACAACCACCGGTTGAGAA---TCAGACCACGGCGAAGGCGGTTGAGA 354
Query 383 AAACGCCGGTTTTCAAGAAATGGCAACATCCCGCGGCGCCGTTTTATTACGAGTCATCGA 442
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 355 AAACGCCGGTTTTCAAGAAATGGCAGCATCCGGCGGCGCCGTTCTATTACGAGTCATCGA 414
Query 443 CGTTTGTTCCACCGTTTGTTCCGGTTTAGTATTGGTTTAGAGATCCAACGGTTCAAAAGT 502
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 415 CGTTTGTTCCACCGTTTGTTCCGGTTTAGTATTGGTTTAGAGATCCAACGGCTCAAAAGT 474
Query 503 ACAGTTTGTTTGTTTT-TT-GATTCTATGTAGATCTAACGGCCCAGAAAACGCGTTTTGT 560
|||||||||||||||| || | |||| |||||||||||||||||||||||||||||||||
Sbjct 475 ACAGTTTGTTTGTTTTATTTGGTTCTGTGTAGATCTAACGGCCCAGAAAACGCGTTTTGT 534
Query 561 GCGTTTCTACTATTTTGTGGTTGGAACAAACTCGATTTTCGTAAAGAATTT-AATAAATC 619
|||||| |||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 535 GCGTTTTTACTATTTTGTGGTTGGAACAAACGCGATTTTCGTATAGAATTTTAATAAATA 594
Query 620 AAAAGATTATTAAATTAATAAGCATGTTTCTGTTACTGTTTTTATATGGTCCGAAATGTA 679
|||||||| ||||||||||||||||||||||||||||| |||| | ||||||||| ||
Sbjct 595 AAAAGATTGTTAAATTAATAAGCATGTTTCTGTTACTGGTTTTGT--GGTCCGAAACATA 652
Query 680 AAAGCTAAAGTCCAATTTAGTTATTGTGGATGTTTATGTATATA-GTGTAACGTTGT-GA 737
||||||||||||||||||| ||||||||||||||| || |||| |||||||||||| ||
Sbjct 653 AAAGCTAAAGTCCAATTTAATTATTGTGGATGTTTCTGCGTATAAGTGTAACGTTGTCGA 712
Query 738 AATGTGTGAACACAAGATTAATG 760
|||||||| ||||||| ||||||
Sbjct 713 AATGTGTGGACACAAGGTTAATG 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29316523173
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5