BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23210.1 Length=1294 Score E Sequences producing significant alignments: (Bits) Value Ahg479835 jgi|Araly1|479835|fgenesh2_kg.3__2536__AT3G23210.1 1500 0.0 Ahg930345 jgi|Araly1|930345|scaffold_302802.1 305 4e-82 > Ahg479835 jgi|Araly1|479835|fgenesh2_kg.3__2536__AT3G23210.1 Length=1190 Score = 1500 bits (812), Expect = 0.0 Identities = 1019/1118 (91%), Gaps = 17/1118 (2%) Strand=Plus/Plus Query 154 TGTTCTTCTTCTGATGTATCCATCAATCGAAGACGATGATGATCTTCTCGCTGCTCTTTG 213 |||| ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| Sbjct 85 TGTTATTCTTCTGATGTATCAATCAATTGACGACGATGATGATCTTCTCGCTGCTCTTTG 144 Query 214 TTTTGATCAAAGCAATGGAGTAGAAGATCCTTATGGATATATGCAAACAAATGAAGATAA 273 ||||||||||||||||||||||| ||||||||||| |||||| || |||||||| ||||| Sbjct 145 TTTTGATCAAAGCAATGGAGTAGTAGATCCTTATGCATATATTCAGACAAATGAGGATAA 204 Query 274 CATATTTCAGGATTTTGGGTCTTGTGGTGTGAATCTGATGCAGCCACAACAAGAACAATT 333 ||| ||||||||||||||||| |||||| ||||||| | ||| |||||||| ||||||| Sbjct 205 CATCTTTCAGGATTTTGGGTCCTGTGGTTTGAATCT-A--CAGTCACAACAACAACAATT 261 Query 334 TGATTCTTTTAATGGAAATCTTGAGCAAGTTTGTAGTAGCTTTAGAGGAGG-AAACAATG 392 ||||||||||| |||||||||||| |||| || | ||||||||||||| || |||||||| Sbjct 262 TGATTCTTTTAGTGGAAATCTTGAACAAG-TT-T-GTAGCTTTAGAGG-GGAAAACAATG 317 Query 393 GAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTG 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318 GAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTG 377 Query 453 GAGTTTTGCAGCAAGAGACACATCAAGTCTGTGGCTTTAGAGGACAAAACGACGATTCTG 512 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 378 GAGTTTTGCAGCAAGAGACTCATCAAGTTTGTGGCTTTAGAGGACAAAACGACGATTCTG 437 Query 513 CAGTGCCTCATTTGCAGCAGCAACAAGGACAGGTGTTTAGTGGTGTAGTGGAAATCAATT 572 ||| | ||||||| ||||| |||||||||| |||| ||| ||||||||||||||||||| Sbjct 438 CAGCGAATCATTTGGAGCAGGAACAAGGACAAGTGTGTAGCGGTGTAGTGGAAATCAATT 497 Query 573 CTTCGTCATCTGTTGGAGCTGTTAAGGAAGAGTTTGAGGAAGAATGT-TCGGGGAAGAGG 631 ||||||| || ||||||| ||||||||| ||||| || | | || | || || ||| Sbjct 498 CTTCGTCGTCGGTTGGAGGTGTTAAGGATGAGTTAGAACATGGAT-TATCTATTAACAGG 556 Query 632 AGACGAACTGGATCATGTAGCAAGCCAGGAACCAAAGCCTGTCGCGAGAAACTAAGAAGG 691 |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 557 GGACGAAATGGATCATGTAACAAGCCAGGAACCAAAGCCTGTCGTGAGAAACTAAGAAGG 616 Query 692 GAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTAGAGCCTGGCAGGACTCCA 751 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 617 GAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTGGAGCCTGGCAGGAATCCA 676 Query 752 AAGACGGATAAATCAGCTATACTCGACGATGCAATCCGGGTTGTGAATCAGCTTAGAGGT 811 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 677 AAGACGGATAAATCAGCTATACTCGATGATGCAATCCGGGTTGTGAATCAGCTCAGAGGT 736 Query 812 GAAGCTCATGAGCTTCAAGAAACCAACCAAAAGCTTCTAGAAGAGATCAAGAGTCTAAAG 871 ||||||||||||||| ||||||||||||| |||||||| ||||||||||||| ||||||| Sbjct 737 GAAGCTCATGAGCTTAAAGAAACCAACCAGAAGCTTCTGGAAGAGATCAAGAATCTAAAG 796 Query 872 GCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGATG 931 ||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||||| Sbjct 797 GCGGAGAAAAACGAGTTACGGGAGGAAAAGCTGGTGTTGAAGGCGGATAAGGAGAAGATG 856 Query 932 GAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATCCA 991 ||||||||||| |||||||||| | |||||||||| |||||||||||||| ||||||||| Sbjct 857 GAGCAACAGTTGAAATCTATGGCGTTTCCATCACCGGGTTTCATGCCCTCACAGCATCCA 916 Query 992 GCAGCTTTCCATTCCC-ATAAGATGGCGGTGGCTTAC-CCTTACGGCTACTATCCTCCAA 1049 ||||||||||| |||| |||| ||| |||| || | |||| | ||||||||||||| Sbjct 917 GCAGCTTTCCA-TCCCAATAATATGTCGGTTTATT-CGGGTTACAGTTACTATCCTCCAA 974 Query 1050 ACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCTCAAAA 1109 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 975 ACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCACAAAA 1034 Query 1110 ATCTTCCTCCTGTTGCTTAATCTTCTT-CATGTTGATTCATCATTGATCATTGTTATCAA 1168 |||||||||||||||||||||| ||| | |||||||| |||| ||||||| |||||| Sbjct 1035 ATCTTCCTCCTGTTGCTTAATCAGCTTTC-TGTTGATTAATCAATGATCATAACTATCAA 1093 Query 1169 TCCCTTAGGAATTTTTGTTCCTTCAGATGATTCTTTAATCAGTAGTTTTGCAGTAACCAT 1228 || |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1094 TCGCTTAGGAATTTTTGTTCCTTCAGATGATTCTTTA-TCAGTAGTTTTACAGTAACCAT 1152 Query 1229 TTGGAGATTAGAGAATTTTATGATTTGAATAAAATGTC 1266 | ||||||||||||||||| |||||||||||||||||| Sbjct 1153 TGGGAGATTAGAGAATTTTTTGATTTGAATAAAATGTC 1190 > Ahg930345 jgi|Araly1|930345|scaffold_302802.1 Length=670 Score = 305 bits (165), Expect = 4e-82 Identities = 228/258 (88%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 870 AGGCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGA 929 ||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||| Sbjct 415 AGGCGGAGAAAAACGAATTATGGGAGGAAAAGCTGGTGTTGAAGGCGGATAAGGAGAAGG 474 Query 930 TGGAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATC 989 ||| ||||||||| |||||||||| | |||||||||| |||||||| ||||| ||||||| Sbjct 475 TGGTGCAACAGTTGAAATCTATGGCGTTTCCATCACCGGGTTTCATCCCCTCGCAGCATC 534 Query 990 CAGCAGCTTTCCATTCCC-ATAAGATGGCGGTGGCTTAC-CCTTACGGCTACTATCCTCC 1047 ||||||||||||| |||| |||| ||| |||| || | |||| | ||||||||||| Sbjct 535 CAGCAGCTTTCCA-TCCCAATAATATGTCGGTTTATT-CGGGTTACAGTTACTATCCTCC 592 Query 1048 AAACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACG-TCTCGTGATCTCA 1106 ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 593 AAACATGGCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGGTCTCGTGATCACA 652 Query 1107 AAAATCTTCCTCCTGTTG 1124 |||||||||||||||||| Sbjct 653 AAAATCTTCCTCCTGTTG 670 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48377981673 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5