BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23255.2 Length=929 Score E Sequences producing significant alignments: (Bits) Value Ahg479840 jgi|Araly1|479840|fgenesh2_kg.3__2541__AT3G23255.1 994 0.0 > Ahg479840 jgi|Araly1|479840|fgenesh2_kg.3__2541__AT3G23255.1 Length=764 Score = 994 bits (538), Expect = 0.0 Identities = 675/740 (91%), Gaps = 13/740 (2%) Strand=Plus/Plus Query 74 ATGGTAGAGAGATTCTTCCCGACGAAGCGGAGCTCCGGCGAC-GAGAATCACCGTCGGGG 132 ||||| |||||||| ||||||||||||||||||||||||||| || ||| ||| | ||| Sbjct 1 ATGGTGGAGAGATTTTTCCCGACGAAGCGGAGCTCCGGCGACGGA-AATTGCCGGC-GGG 58 Query 133 A-AATCTCTCGCTTCTCTCCGGTCCAATTTCCTCAGGCAAAACCTCTCTGCTCTTCCAAT 191 | || || | || ||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 59 ATAAACTAACTCTCCTCTCCGGTCCAATTTCGTCAGGCAAAACCTCTCTACTCTTCCAAT 118 Query 192 TAGCTCTCAATGTAGCGAGTGCTTCTACAACCACTCGTGTCGTCTTCATCTGTCACCGGa 251 | |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| Sbjct 119 TCGCTCTCAATGTAGCGAGTGCTTCTTCAAACAATCGTGTCGTCTTCATCTGTCACCGGA 178 Query 252 aaaaaaTCGAATCCAATCCTCCGTTTCTCTCTCAGGGAATCGATCCTTCCTCTGATGTAT 311 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AAAGAATTGAATCCAATCCTCCGTTTCTCTCTCAGGGAATCGATCCTTCCTCTGATGTAT 238 Query 312 TCAATCGAATCCAGATTAAATATGTAGATGATGATGAAGGAATCAGAAAATACTTTGCTG 371 |||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 239 TCAATCGAATTCAGATGAAATATGTGGATGATGATGAAGGAATCAGGAAATACTTTGCTG 298 Query 372 CGTTTCATCTTCATCATGTTGATGATTTACCATCTGCAGTTATAATCGATGATTTTGGTG 431 ||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||| || | Sbjct 299 CGTTTCATCTTCATCGTGTTGATGATTTTCCAAATGCGGTTATAATCGATGATTTCGGCG 358 Query 432 ATTACTTTAG-CAAATTGAACTCGGTGATGAATTCTCGGGCTAGAGACATGGCGATGGTT 490 |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 359 ATTACTTTAGTC-AATTGAACTCGATGATGAATTCTCGGGCTAGAGACATGGCGATGGTT 417 Query 491 CGGACTCTTGCTCTATGCCACAATGCTATAGTTGATGCTAATAGGAAAGCTTTGTGCGAG 550 ||||||||||||||||||||||||||||||| ||||||||| | || ||||| || ||| Sbjct 418 CGGACTCTTGCTCTATGCCACAATGCTATAGCTGATGCTAA--GCAA-GCTTTTTGTGAG 474 Query 551 CTTGTCTTATCTGAGACTAACCATGGAGACTCTCCGAGGTCGTTGTTCATCTACAAACGA 610 ||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 475 CTTGTATTGTCTGAGACTAACCATGGAGACTCTCCGAGGTCGTTGTTTATATACAAACGA 534 Query 611 TGGATTCCGAAGATCTTTACTATAAAAGGTCATGGTGATGGATCGTTTCTATTGACAAGT 670 ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 535 TGGATCCCGAAGATCTTTACGATAAAAGGTCATGGTGATGGATCGTTTCTCTTGACAAGT 594 Query 671 AATGATACATCCGAGAGAAGCGCCAAGTATTCGATCGCGCTGCAATATCTCATCTTGGAG 730 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 AATGGTACATCCGAGAAAAGCGCCAAGTATTCGATCGCGCTGCAATATCTCATCTTGGAG 654 Query 731 CAGATTATTGAT-GATAGTTAGTTAACAGAGGAGAGTATCCCCT-AGTGACAAGTTCTGT 788 ||||| |||||| | || |||||| || ||| |||||||| ||| | ||| ||||||||| Sbjct 655 CAGATGATTGATAGTTA-TTAGTTCACTGAGAAGAGTATCTCCTTA-TGAAAAGTTCTGT 712 Query 789 TTTTAAGATATTTTAGTCAA 808 ||||| |||||||| ||||| Sbjct 713 TTTTATGATATTTTTGTCAA 732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34463116968 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5