BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23340.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479849 jgi|Araly1|479849|fgenesh2_kg.3__2550__AT3G23340.1 2396 0.0
> Ahg479849 jgi|Araly1|479849|fgenesh2_kg.3__2550__AT3G23340.1
Length=1694
Score = 2396 bits (1297), Expect = 0.0
Identities = 1610/1750 (92%), Gaps = 66/1750 (4%)
Strand=Plus/Plus
Query 1 AAATAAATAACATCCGTCAAAACCATCTGTCTCTGTTTTCTCATTCATCTCCTCTACTTG 60
||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 1 AAATAAATAACATCCGTCAAAACCATCTGTCTCTG-TTTCTCTTTCGTCTCCTCTACTTC 59
Query 61 TTTAGTCGGTCATCAAACTATCTCTTCAAGTTTATCCTCAG-AAATATACAAACTCCTCA 119
| ||||||||||||||| || |||||||| |||||||||| ||||||| ||||||||||
Sbjct 60 TCCAGTCGGTCATCAAACCATTTCTTCAAGATTATCCTCAGAAAATATAGAAACTCCTCA 119
Query 120 GAAAATTCTTTC-G---TTTGGTTT-GCTTCGTTCTACAATTTTGTATTGATGAGAATGT 174
|||||||||||| | || ||||| ||||| || ||| |||||||| |||||| ||||
Sbjct 120 GAAAATTCTTTCTGAACTTGGGTTTAGCTTCATTTTACTATTTTGTAATGATGATAATG- 178
Query 175 TATATTGAGTCATTAACCGTTTGATAAATCGTATTTGGCTCTGTAAGTAGTATTTATTGG 234
|| | | ||||| | || | | | ||||| |||||||||||||
Sbjct 179 ----TT-A-T-ATTAA--G--TG------C-----T---T-TGTAATTAGTATTTATTGG 212
Query 235 TATTGAAACGATGGATCATGTAATCGGTGGCAAGTTCAAGTTAGGTAGGAAGATTGGTAG 294
|| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 213 AATCGAAACGATGGATCATGTATTCGGTGGCAAGTTCAAGTTAGGTAGAAAGATTGGTAG 272
Query 295 TGGATCATTCGGTGAACTTTATATTGGGATTAATGTTCAAACTGGAGAAGAAGTTGCTCT 354
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 273 TGGATCATTTGGTGAACTTTATATAGGGATTAATGTTCAAACTGGAGAAGAAGTTGCTCT 332
Query 355 TAAGCTGGAACCTGTGAAGACAAAGCATCCTCAGCTCCATTATGAATCAAAAGTATACAT 414
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TAAACTGGAACCTGTGAAGACAAAGCATCCTCAGCTCCATTATGAATCAAAAGTATACAT 392
Query 415 GCTTCTTCAAGGAGGGACGGGTGTTCCGCATATCAAATGGTTCGGTGTTGAGGGTAACTA 474
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 393 GCTTCTTCAAGGAGGGACGGGTGTTCCGCATCTCAAATGGTTCGGTGTTGAGGGGAATTA 452
Query 475 CAATTGTATGGCTATTGACCTTCTTGGTCCAAGCTTGGAAGACTTGTTCAACTATTGCAC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 CAATTGTATGGCTATTGACCTTCTTGGTCCAAGCTTGGAAGACTTGTTCAACTATTGCAC 512
Query 535 TCGGAGTTTTTCTTTGAAAACTGTTCTAATGCTTGCTGATCAGTTAATAAACAGAGTTGA 594
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TCGGAATTTTTCTTTGAAAACTGTTCTAATGCTTGCTGATCAGTTAATAAACAGAGTTGA 572
Query 595 GTACATGCACTCTCGAGGATTTCTTCACCGTGATATTAAACCGGATAACTTTTTGATGGG 654
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 573 GTATATGCATTCTCGAGGATTTCTTCACCGTGATATTAAACCGGACAACTTTTTGATGGG 632
Query 655 TCTCGGTCGCAAAGCAAACCAAGTGTACATTATTGATTATGGGCTTGCTAAAAAGTATAG 714
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 633 TCTCGGTCGCAAAGCAAACCAGGTGTACATTATTGATTATGGGCTTGCTAAAAAGTATAG 692
Query 715 AGATCTTCAGACACACAAGCATATACCTTACAGGGAAAATAAGAATCTGACTGGAACTGC 774
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 693 AGATCTTCAGACACACAAGCATATACCCTACAAGGAAAATAAGAATCTGACTGGAACTGC 752
Query 775 TAGGTATGCAAGTGTCAACACACACCTTGGCATTGAGCAAAGTAGACGAGATGATCTGGA 834
| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 753 TCGGTATGCAAGTGTCAACACACACCTTGGGATTGAGCAAAGTAGGCGAGATGATCTGGA 812
Query 835 GTCTCTTGGTTATGT-TCTGATGTATTTTATACGAGGAAGTTTACCATGGCAAGGTCTAA 893
||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 813 GTCTCTTGGCTATGTGT-TGATGTATTTTCTACGAGGAAGTCTACCATGGCAAGGTCTAA 871
Query 894 AAGCTGGTACTAAGAAACAGAAATACGAGAAGATAAGTGAAAAGAAGATGCTTACTCCCG 953
|||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| |
Sbjct 872 AAGCTGGTACCAAGAAACAGAAATATGAAAAGATTAGTGAAAAGAAGATGCTTACTCCAG 931
Query 954 TAGAGGTTCTTTGCAAGTCATATCCATCCGAGTTCACATCATATTTCCATTACTGCCGTT 1013
||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| || |
Sbjct 932 TAGAGGTTCTTTGTAAGTCATTTCCATCAGAGTTCACATCATATTTCCATTACTGTCGAT 991
Query 1014 CATTGAGGTTTGAGGATAAACCAGATTATTCATATCTGAAAAGACTTTTCAGGGACCTTT 1073
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 992 CATTGAGGTTTGAGGATAAACCAGATTATTCATATCTAAAAAGACTTTTCAGAGACCTTT 1051
Query 1074 TTATTCGGGAAGGTTATCAGTTTGACTATGTGTTTGATTGGACAATCTTGAAATATCCTC 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 TTATTCGGGAAGGTTATCAGTTTGACTATGTGTTTGATTGGACAATCTTGAAATATCCTC 1111
Query 1134 AGAGTGGCTCTATTTCAAAACCAAGGCCAAATCCTAAACCAGCTCTAGACCCTCCAGGAC 1193
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1112 AGAGTGGCTCTATTTCGAAACCAAGGCCAAATCCAAAACCAGCTCTAGACCCTCCAGGAC 1171
Query 1194 CATCTGCAGAACGAAATGAAAAGCCTATAGTGGGGCAGGATCTACGAGAAAGATTCTCAG 1253
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1172 CATCTGCGGAACGAAATGAAAAGCCTATAGTGGGGCAGGATCTGCGAGAAAGATTCTCAG 1231
Query 1254 GTGCAGTTGAAGCATTCGCTAGACGAAATGTACCGAGTCATGGCATTCGCCCGAAGCACA 1313
||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||
Sbjct 1232 GTGCAGTTGAAGCATTCGCTAGACGGAATGTAACGAGTCATGGTATTCGCCCTAAGCACA 1291
Query 1314 TTTTTTCTGATGATGCTTCCAAAGAAGTGCAAGTGTCTGAAAAAACCCGAAATGAGATTG 1373
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1292 TTTTTTCTGATGATGCTTCCAAAGAAGTGCAAGTGTCTGAAAAAGCCCGAAATGAGATTG 1351
Query 1374 CTACAAAGATGGCAGTGATGTCTAGCAGCCAACCTGGCTCATCAGGTGAGCTGAGTGAGA 1433
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1352 CTACAAAGATGGCAGTGATGTCAAGCAGCCAACCTGGCTCATCAGGTGAGCTTAGTGAAA 1411
Query 1434 ACCGCTCAAGTAAACTTTTTTCAAGCAGTGCCCAAAAGATTCAACCGG-TGCAAGAAACT 1492
|||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||
Sbjct 1412 ACCGCTCAAGTAAACTTTTTACAAGCGGTGCCCAAAAGATTCAACCGGGT-CAAGAAACT 1470
Query 1493 AAGTTATCTGCAAGGCTTGGGCGTGATGACGGCCTGAGAAGCTTCGATATGCTTACTATC 1552
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 AAGTCATCCACAAGGCTTGGGCGTGATGACGGCCTGAGAAGCTTCGATATGCTTACTATC 1530
Query 1553 GGTTCCGGAAAGCGGAAATGAGTCACTCAAGAAAGCTTGCGGATCGGAGTTTGGAAGAAT 1612
||||| ||||||||||||||||| | | || | | | ||||||
Sbjct 1531 GGTTCTGGAAAGCGGAAATGAGT-A-----G-----TT-----T-G-A------AAGAAT 1566
Query 1613 CTGAAAATGTGTAAACAATGTAAAACT--GTCTCCCACTTTATGTGTTTATAGTTCTTCA 1670
|||||||||||||||||||| |||||| ||||||| |||| |||||||||||| ||||
Sbjct 1567 CTGAAAATGTGTAAACAATGAAAAACTCTGTCTCCCGCTTT--GTGTTTATAGTTGTTCA 1624
Query 1671 TAGAATTTTATAAAGTGGTATATGTAACTTGTAACACAAGTACTTTGTTTATATTAGTTC 1730
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 TAAAATTTTATAAAGTTGTATATGTAACTTGTAACACAAGTACTTTGTTTATATTAGTTC 1684
Query 1731 AAATTTGGTC 1740
||||||||||
Sbjct 1685 AAATTTGGTC 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65324770175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5