BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23410.1
Length=2420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479855 jgi|Araly1|479855|fgenesh2_kg.3__2556__AT3G23410.1 3408 0.0
> Ahg479855 jgi|Araly1|479855|fgenesh2_kg.3__2556__AT3G23410.1
Length=2359
Score = 3408 bits (1845), Expect = 0.0
Identities = 2169/2325 (93%), Gaps = 23/2325 (1%)
Strand=Plus/Plus
Query 3 TCTTAAGAACTTTCCCAGTTTTGTTTTTTAATCATATCAAAGCAAACTGTGTGATGGATA 62
||||||||||||||||||||||||||||| ||| ||| ||||| || |||||||||| ||
Sbjct 1 TCTTAAGAACTTTCCCAGTTTTGTTTTTTTATCGTATTAAAGCGAATTGTGTGATGGGTA 60
Query 63 AGTACAAAGTCGCCGGAAAATTTGGTCTCCCGGACATCACGGTGGCAGAGATGGAATCTT 122
||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 61 AGTACAAAGTCGCCGGAAAATTTGGCCTCCGGGACATCACGGAGGCAGAGATGGAATCTT 120
Query 123 TAGCTAGCTTTTGTGAAGCTGTCTTGCCTTCAGTGCAGCCACCGCCGGAAG-AGCTTTCC 181
||||||||||||||||||||||||||||| | |||| | |||||||||| || |||||
Sbjct 121 TAGCTAGCTTTTGTGAAGCTGTCTTGCCTCCTGTGCTG---CCGCCGGAAGAAG-TTTCC 176
Query 182 GGTGAAGGTGATAACCATCGGAACAAAGAGGCTCTCCGGTCATTTTACTCAACTTCTGGG 241
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGCGAAGGTGATAACCACCGGAACAAAGAGGCTCTCCGGTCATTTTACTCAACTTCTGGG 236
Query 242 TCTAAAACTCCTGTCCTTCGCCAGAGCATTGAGCTGGTCACGAAACGAGGGACAATAGAA 301
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 237 TCTCAAACTCCTGTCCTTCGCCAGAGCATTGAGCTGATCACGAAACGAGGGACAATAGAA 296
Query 302 GCTTATATTGCTACTAGGCTTATATTGTTCTTGCTTGCTACTCGGCTTGGGACGCTT-CT 360
|||||| ||||||||||||| ||||||||||||||||| ||||||||||| || ||| ||
Sbjct 297 GCTTATCTTGCTACTAGGCTCATATTGTTCTTGCTTGCGACTCGGCTTGGTAC-CTTGCT 355
Query 361 CATTTGTGGAACCGAGTGTTTGGTCTCAAGATGGCCTTTTGTCGAGAAATTTAGTGAGCT 420
||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 356 CATTTGTGGAACCGAATGTTTGGTCTCGAGATGGCCTTTTGTTGAGAAATTCAGTGAGCT 415
Query 421 CTCGTTGGAGAAGAGAGAAAGAGTACTTCAGAAACAATTCAAG-AATTGGATTCTGACTC 479
|||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 416 CTCGTTGGAGAAGAGAGAAAGAGTACTTCAGAAACAATTC-AGAAATTGGATTTTGACTC 474
Query 480 CAATTAGAGCTGCTTTTGTCTACATCAAAGTTGCATTCCTCTTCTGTTTCTTCTCCCGGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 475 CAATTAGAGCTGCTTTTGTCTACATCAAAGTTGCATTCCTCTTCTGTTTCTTCTCTCGGG 534
Query 540 TGAATCCAAATGGCGAAAACCCGGCATGGGAAGCCATAGGGTATCGTGTTAACCCCGATG 599
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 535 TGACTCCAAATGGCGAAAACCCGGCATGGGAAGCCATAGGGTATCGTGTTAACCTCGATG 594
Query 600 AGAACAAACCTTCTGAAACTCATAACGAAAGACCACTTGAGAAAGGGATAGTGGAGACGA 659
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 595 AGAACAAACCTTCTGCAACTCATAAGGAAAGACCTCTTGAGAAAGGGATAGTGGAGACGA 654
Query 660 TGGAAGAAACAGAGCAGACTCTTCTTGAATCACTTGCTCATAAAGGCCTAGAAGCGGTTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 655 TGGAAGAAACAGAGCAGACTCTTCTTGAATCACTTGCTCATAAAGGCCTAGAAGCGGACC 714
Query 720 TTGACACGGAGCATGATGCGATCAGAATAAAATGTGATGTTGTGGTCGTCGGGTCTGGTT 779
||||||||| ||||||||||||||||| |||||||||| |||||| || ||||||||||
Sbjct 715 TTGACACGGTCCATGATGCGATCAGAATCAAATGTGATGCTGTGGTGGTAGGGTCTGGTT 774
Query 780 CAGGAGGAGGCGTAGCAGCTTCTGTTCTAGCGAAATCTGGTTTAAAAGTGGTTGTTCTTG 839
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CAGGGGGAGGCGTGGCGGCTTCTGTTCTAGCGAAATCTGGTTTAAAAGTGGTTGTTCTTG 834
Query 840 AAAAAGGAAGCTACTTTACGCCTTCTGAACATCGTCCTTTCGAAGGTCCTGGCTTGGATA 899
|||||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||
Sbjct 835 AAAAAGGAAGCTACTTTACGCCTTCTGATTATCGTCCTTTCGAGGGTTCTGGCATGGATA 894
Query 900 AACTCTACGAGAATGGAGGGATTCTCCCGAGTGTTGATGGGAGTTTTATGGTGTTGGCTG 959
|||| || || |||||||||||||||||||| |||||||||| | |||||||||||||||
Sbjct 895 AACTGTATGAAAATGGAGGGATTCTCCCGAGCGTTGATGGGAATCTTATGGTGTTGGCTG 954
Query 960 GAGCAACTGTAGGTGGTGGATCTGCTGTGAACTGGTCTGCGTGTATCAAAACCCCGAAGT 1019
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 955 GAGCAACTGTAGGCGGTGGATCTGCTGTGAACTGGTCTGCGTGTATCAAAACGCCGAAAT 1014
Query 1020 CGGTTCTTCAAGAATGGTCAGAGGATCAAAATATACCTCTTTTCGGTACTAAAGAATATC 1079
|||| |||||||||||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct 1015 CGGTACTTCAAGAATGGTCAGAGGATCAAAACATACCTCTTTTCGCTACGAAAGAATATG 1074
Query 1080 TAACGGCTATGGAAGTTGTGTGGAAGAGGATGGGTGTCACGGAGAAATGTGAACTGGAGA 1139
| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1075 TTTCGGCTATGGAAGTTGTGTGGGAGAGGATGGGTGTCACGGAGAAATGTGAAATGGAGA 1134
Query 1140 GTTTTCAGAATCAGATTCTGAGAAAAGGTTGCGAAAATCTC-GGGTTCAATGTTGAAAAC 1198
|||| ||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||
Sbjct 1135 GTTTCCAGAATCAGGTTCTGAGAAAAGGTTGCCAAAATCTCGGGGTT-AATGTCGAAAAC 1193
Query 1199 GTGCCAAGAAACTCCTCGGAGAGTCATTACTGTGGATCTTGCGGGTATGGATGTAGACAA 1258
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1194 GTGCCAAGAAACTCCTCTGAGAGTCATTACTGTGGATCTTGCGGGTATGGATGTATACAA 1253
Query 1259 GGAGACAAGAAAGGAAGTGACCGGACTTGGCTTGTCGATGCGGTGGGGCACGGTGCCGTG 1318
||||||||||||||||| ||||||||||||||||| || ||||| | ||||| ||||||
Sbjct 1254 GGAGACAAGAAAGGAAGCGACCGGACTTGGCTTGTTGACGCGGTTAGTCACGGCGCCGTG 1313
Query 1319 ATTCTTACTGGATGTAAAGCGGAGAGATTCATACTCGAAAAGAACGGTAGTAACAAAGGA 1378
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ATTCTAACGGGATGTAAAGCGGAGAGATTCATACTCGAAAAGAACGGTAGTAACAAAGGA 1373
Query 1379 GGCAAGCAAATGAAATGTTTGGGAGTGATGGCTAAATCTTTAAACGGAAACATAGCAAAG 1438
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1374 GGCAAGCAAATGAAATGTTTGGGAGTGATGGTTAAATCTTTAAACGGAAACATAGCAAAG 1433
Query 1439 ATGTTAAAGATTGAAGCTAAAGTAACGGTTTCAGCAGGGGGTGCTCTTTTAACACCTCCG 1498
| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 ACGCTAAAGATCGAAGCTAAAGTAACGGTTTCAGCAGGGGGTGCTCTTTTAACACCTCCT 1493
Query 1499 TTGATGATATCTAGCGGGTTGAGAAACCGAAACATCGGTAAAAACCTTCACTTACACCCT 1558
|||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1494 TTGATGATCTCAAGCGGGTTGAGAAACCGACACATCGGTAAAAACCTTCACTTACACCCT 1553
Query 1559 GTTTTAATGGCGTGGGGTTACTTCCCGGACAAGGAATCTTCTAACATCAGTTTCAAGGGA 1618
||| |||||||||||||||||||||||| ||| ||||||| || | ||||||||||
Sbjct 1554 GTTCTAATGGCGTGGGGTTACTTCCCGGTGAAGAAATCTTC---CA--A-TTTCAAGGGA 1607
Query 1619 AATTCATATGAAGGCGGGATCATAACATCAGTGAGCAAAGTGTTATCAGAAGATTCTGAA 1678
|| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 1608 AAGTCATACGAAGGCGGGATCATAACATCAGTGAGCAAAGTGTTATCCGAAGATTCAGGA 1667
Query 1679 GTCAGAGCAATCATAGAGACACC-GCAACTAGGACCAGGTTCGTTCTCCGTTTTAACTCC 1737
|| ||||| ||||| |||||||| || ||||||||||||||| ||||| |||||| |||
Sbjct 1668 GTTAGAGCCATCATTGAGACACCGGC-ACTAGGACCAGGTTCATTCTCGGTTTTATGTCC 1726
Query 1738 TTGGACCTCTGGGCTTGACATGAAGAAAAGAATGGCTAGATACTCAAGAACCGCGAGTCT 1797
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1727 TTGGACCTCAGGGCTTGACATGAAGAAGCGAATGGCTAGATACTCAAGAACCGCGAGTCT 1786
Query 1798 CATAACCATAGTTAGAGACCGCGGGTCAGGAGAAGTTAAAACCGAAGGCAGAATAAACTA 1857
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1787 CATAACGATAGTTAGAGATCGCGGGTCAGGAGAAGTTAAAACCGAAGGCAGAATAAGCTA 1846
Query 1858 CACCGTGGACAAAACCGACAGAGATAATCTCAAAGCTGGGCTTAGAGAGTCGCT-AAGGA 1916
| |||||||||||||||| ||||||||||||||||| ||||||||| ||||| | || ||
Sbjct 1847 CGCCGTGGACAAAACCGATAGAGATAATCTCAAAGCCGGGCTTAGACAGTCGTTGAA-GA 1905
Query 1917 TACTAATAGCAGCTGGAGCAGAGGAAGTGGGAACTCACAGAAGCGACGGGCAGAGACTAA 1976
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1906 TACTAATAGCAGCTGGAGCAGAGGAAGTAGGAACTCACAGAAGCGACGGGCAGAGACTAA 1965
Query 1977 TATGCAAAGGTGTCAATGAGAATTCGATCCAAGAGTTTTTAGACTCGGTGAGTACAGAGG 2036
|||||||||||||| || ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1966 TATGCAAAGGTGTCGATAAGAATTCGATCGAAGAGTTTTTGGACTCGGTGAGTACAGAGG 2025
Query 2037 AAGGAGCAAAGGGAATGACTGAGAAATGGAACGTTTATAGCTCAGCTCATCAGATGGGAA 2096
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 AAGGACCAAAGGGGATGACTGAGAAATGGAACGTTTATAGCTCAGCTCATCAGATGGGAA 2085
Query 2097 GCTGTAGAATTGGAGAAAATGAAAAAGAAGGTGCAATAGATTTGAATGGAGAGAGTTGGG 2156
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2086 GCTGTAGAATTGGAGAAAATGAAAAAGAAGGTGCAATAGATTTAAATGGAGAGAGTTGGG 2145
Query 2157 AAGCAGAGAAGTTGTTTGTGTGCGATGCAAGTGCGTTGCCTAGTGCTGTTGGTGTTAACC 2216
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2146 AAGCAGAGAAGTTGTTTGTGTGTGATGCAAGTGCGTTGCCTAGTGCTGTTGGTGTTAATC 2205
Query 2217 CTATGATCACAGTCATGTCTACGGCTTATTGTATCTCCACAAGAATCGCTAAGTCCATGA 2276
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2206 CTATGATCACAGTCATGTCTACGGCTTATTGTATCTCCACACGGATCGCTAAGTCCATGA 2265
Query 2277 CCACTGGTTTATCTCATTGAACTAAAATAACGTATACTTTCTATT 2321
|| | || ||||||| ||||| |||||||||||||| ||| ||||
Sbjct 2266 CCGCAGGCTTATCTCGTTGAAGTAAAATAACGTATA-TTT-TATT 2308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91188046530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5