BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23530.1
Length=3177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930378 jgi|Araly1|930378|scaffold_302835.1 4215 0.0
Ahg905398 jgi|Araly1|905398|Al_scaffold_0003_2526 863 0.0
Ahg359447 jgi|Araly1|359447|fgenesh1_pg.C_scaffold_242000003 553 3e-156
Ahg887823 jgi|Araly1|887823|Al_scaffold_0242_1 531 2e-149
> Ahg930378 jgi|Araly1|930378|scaffold_302835.1
Length=2648
Score = 4215 bits (2282), Expect = 0.0
Identities = 2528/2649 (95%), Gaps = 8/2649 (0%)
Strand=Plus/Plus
Query 305 aaaaaaaGAGGAGAAACAAAATGAAAGTGGCAGTGATAGGAAGTGGAATAAGTGGATTAG 364
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 AAAAAAAGA--AGAAAAAAAATGAAAGTGGCAGTGATAGGAAGTGGAATAAGTGGATTAG 64
Query 365 GAAGTGCTTACGTACTTGCGAATCAAGGAGTTAAAGAAGTTGTGTTATACGAGAAAGAAG 424
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 65 GAAGTGCTTACGTACTTGCAAATCAAGGAGTTAAAGAAGTTGTGTTGTACGAGAAAGAAG 124
Query 425 AGTCATTAGGAGGTCATGCTAAAACGGTGCGTTTCGATGGCGTTGACTTGGATCTTGGTT 484
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 125 AGTCATTAGGAGGTCATGCTAAAACGGTGCGTTTTGATGGCGTTGACTTGGATCTTGGTT 184
Query 485 TCATGGTCTTTAATCGTGTTACATATCCAAACATGATGGAGTTCTTCGAGAATCTTGGAG 544
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 185 TCATGGTCTTTAATCGTGTTACATATCCAAACATGATGGAGTTCTTCGAGAACCTTGGAG 244
Query 545 TAGAGATGGAGGTTTCAGACATGTCTTTCGCAGTGAGCCTTGACAATGGGAAAGGTTGTG 604
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 245 TAGAGATGGAGGTTTCAGACATGTCTTTCGCAGTGAGCCTTGACAATGGCAAAGGTTGTG 304
Query 605 AATGGGGAAGCCGCAACGGTGTCTCGGGCTTATTTGCTCAGAAGAAGAACGTTTTAAATC 664
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 305 AATGGGGAAGCCGCAACGGTATCTCGGGCTTATTTGCTCAGAAGAAGAACGTTTTAAATC 364
Query 665 CGTATTTCTGGCAAATGATCAGAGAAATTGTTAGATTTAAAGAAGACGTCTTAAAGTACA 724
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 365 CGTATTTCTGGCAAATGATCAGAGAAATTGTTAGATTTAAAGAAGACGTTTTAAAATACA 424
Query 725 TTGAGGAGCTTGAGGGTAACCCCGATATTGATCGAAAGGAAACATTAGGAGAATTTCTCA 784
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 425 TTGAGGAGCTTGAGGGTAACCCCGATATTGATCGAAAGGAAACCTTAGGAGAATTCCTCA 484
Query 785 ATTCACGTGGATACTCTGAGTTGTTTCAGCAAGCTTACTTGGTACCGATATGCGGTTCGA 844
|| | || ||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 485 ATGCTCGCGGATACTCTGAGTTGTTTCAGAAAGCTTACTTGGTCCCAATATGCGGTTCGA 544
Query 845 TATGGTCATGCCCATCAGACGGTGTCTTAAGCTTCTCTGCATACTCTGTTCTTTCGTTTT 904
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 545 TATGGTCATGCCCATCAGATGGTGTCTTAAGCTTCTCTGCTTACTCTGTTCTTTCGTTTT 604
Query 905 GCTGCAACCACCATCTTCTTCAGATCTTTGGGAGGCCACAGTGGCTAACTGTTGCAGGAC 964
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 605 GCTGCAACCACCATCTTCTTCAGATCTTTGGGAGGCCACAGTGGCTAACCGTTGCAGGAC 664
Query 965 GTTCTCAGACTTATGTCGCAAAGGTTAGGACAGAATTGGAGAGACTAGGATGCAGGATCA 1024
|||||||||||||||| || ||||||||| |||||||||||||||||||||||| ||||
Sbjct 665 GTTCTCAGACTTATGTAGCCAAGGTTAGGGCAGAATTGGAGAGACTAGGATGCACAATCA 724
Query 1025 GAACAAGCTGCGACGTAAAATCTGTTTCGACATCCGAAAATGGTTGTGTAACTGTTACAA 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GAACAAGCTGCGACGTAAAATCTGTTTCGACATCCGAAAATGGTTGTGTAACTGTTACAA 784
Query 1085 GTGGAGATGGGTCTAAAGAAGTATTCGATAGGTGCATATTGGCTATGCACGCCCCAGATG 1144
|||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GTGGTGATGGATCTGAGGAAGTATTCGATAGGTGCATATTGGCTATGCACGCCCCAGATG 844
Query 1145 CTCTGAGATTGCTTGGTGAAGAAGTAACGTTTGACGAATCTAGGGTTCTTGGTGCTTTCC 1204
||||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||
Sbjct 845 CTCTGAGATTGCTTGGTGAAGAAGTTACATTTGACGAAAGTAGAGTTCTTGGTGCTTTCC 904
Query 1205 AATACGTTTACAGCGATATATATCTCCATCACGACATTGATTTGATGCCAAGGAACCAAG 1264
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 905 GATACGTTTACAGCGATATATATCTCCATCACGACATTGATTTGATGCCACGGAACCAAG 964
Query 1265 CAGCGTGGAGTGCGTGGAATTTCTTGGGAAGTACGGAAAAGAAAGTATGTGTAACATACT 1324
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 CAGCGTGGAGCGCATGGAATTTCTTGGGAAGTACGGAAAAGAAAGTATGTGTAACATACT 1024
Query 1325 GGCTCAATATACTTCAGAACCTTGGCGAGAACAGTGAACCATTCTTTGTAACACTTAACC 1384
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1025 GGCTCAATATACTTCAGAACCTTGGCGAGAACCGCGAACCATTCTTTGTAACACTTAACC 1084
Query 1385 CAGACGAGACCCCAAAGAAAACGTTGCTCAAATGGACCACTGGTCACCCTGTACCTTCAG 1444
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1085 CAGACGAGACCCCAAAGAAAACATTGCTCAAATGGACCACTGGTCACCCTGTGCCTTCAG 1144
Query 1445 TTGCTGCTTGGACAGCTTCACAAGAGCTTCACAAGATTCAAGGCAAACGTAACATATGGT 1504
|||| ||||||||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 1145 TTGCAGCTTGGACAGCTTCACAAGAGCTTCACAAGATTCAGGGAAAACGTAACCTATGGT 1204
Query 1505 TCTGTGGTGCATATCAGGGCTATGGTTTCCATGAAGATGGACTAAAGGCTGGTATGGCTG 1564
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1205 TCTGTGGTGCATATCAAGGCTATGGCTTCCATGAAGATGGACTAAAGGCTGGTATGGCGG 1264
Query 1565 CTGCACGAGGTTTGTTAGGCAAAGAAACTGCTCTTCTGAACAATCCGCGACATATGGTCC 1624
||||||||||||||||||| |||||||| ||||| || |||||||||| |||||||||||
Sbjct 1265 CTGCACGAGGTTTGTTAGGGAAAGAAACCGCTCTCCTCAACAATCCGCTACATATGGTCC 1324
Query 1625 CTTCCTTGACAGAAACAGGAGCTCGGCTTTTCGTTACAAGATTCTTGGGACAATTCATAT 1684
|||||||||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1325 CTTCCTTGACAGAAACCGGGGCTCGGCTTTTTGTTACTAGATTCTTGGGACAATTTATAT 1384
Query 1685 CAACCGGTTCTGTAACAATACTAGAAGAAGGAGGAACAATGTTCACATTCGGAGGGAAGG 1744
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 CAACCGGCTCTGTAACAATACTAGAAGAAGGAGGAACAATGTTCACATTCGGAGGGAAGG 1444
Query 1745 ATTCTACTTGTCC-TCTAAAATCTATCCTCAAGATTCACAGTCCTCAATTTTACTGGAAG 1803
||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 ATTCTACATGTCCAT-TGAAATCTATCCTCAAGATTCACAGTCCTCAATTTTACTGGAAG 1503
Query 1804 GTTATGACACAAGCGGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTC 1863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GTTATGACACAAGCGGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTC 1563
Query 1864 GTTGATAAAGAATCAGGACTTTTAAATCTGATTATGATTCTCATTGCTAACAGAGATACA 1923
|| |||||||| ||||||||||| ||| | |||||||||||||||||||| |||||||||
Sbjct 1564 GTCGATAAAGACTCAGGACTTTTGAATTTAATTATGATTCTCATTGCTAATAGAGATACA 1623
Query 1924 AAATCAAATCTTAGTAAGAAAAGGGGATGGTGGACACCGATGTTTTTAACTGCGGGTTTA 1983
||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1624 AAATCAAATCTTACTAAGAAAAGGGGATGGTGGACACCGATGTTTCTAACTGCCGGTTTA 1683
Query 1984 GCATCTGCAAAGTATTTTCTAAAGCATGTCTCTAGGCAGAACACTCTAACACAAGCTCGT 2043
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1684 GCATCGGCAAAGTATTTTCTAAAGCATGTCTCTAGGCAGAACACTTTAACACAAGCGCGT 1743
Query 2044 AGAAACATTTCTCGTCACTATGACCTTAGCAACGAGCTTTTCGGTTTCTTCTTGGATGAT 2103
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1744 AGAAACATTTCTCGTCACTATGACCTTAGCAACGAGCTTTTCGGTTTCTTCTTAGATGAT 1803
Query 2104 ACCATGACTTACTCCTCTGCAGTATTCAAGTCGGATGATGAGGATCTGAGAACTGCACAG 2163
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1804 ACCATGACTTACTCCTCTGCAGTATTCCAGTCGGATGATGAGGATCTGAGAACTGCACAG 1863
Query 2164 ATGAGAAAAATCTCGCTTCTGATTGATAAGGCGAGAATAGAGAAGGACCACGAGGTTTTA 2223
||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1864 ATGAGGAAAATCTCTCTTCTGATTGATAAGGCGAGAATAGAGAAGAACCATGAGGTTTTA 1923
Query 2224 GAGATAGGATGTGGATGGGGAACTTTGGCCATAGAAGTTGTGAGAAGAACTGGATGCAAA 2283
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 GAGATTGGATGCGGATGGGGAACTTTGGCCATAGAAGTTGTGAGAAGAACTGGATGCAAA 1983
Query 2284 TACACCGGGATTACGCTATCTATTGAACAGCTTAAATATGCTGAAGAAAAAGTGAAAGAA 2343
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1984 TACACCGGCATTACGCTATCTATAGAACAGCTTAAATATGCTGAAGAAAAAGTGAAAGAA 2043
Query 2344 GCTGGACTTCAGGACTGGATTACTTTTGAGCTCCGCGATTATCGCCAACTATCTGATGCT 2403
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2044 GCTGGACTGCAGGACCGGATTACTTTTGAGCTCCGCGATTATCGCCAACTATCTGATGCT 2103
Query 2404 CAGAAATATGACAGAATTATATCTTGCGAGATGCTAGAAGCGGTCGGACATGAGTTCATG 2463
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2104 CACAAATATGACAGAATTATATCTTGTGAGATGCTAGAAGCGGTCGGACATGAGTTCATG 2163
Query 2464 GAGATGTTTTTCAGTCGATGTGAAGCCGCACTTGCAGAAAATGGCCTAATAGTCTTGCAG 2523
|| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 2164 GATATGTTTTTCAGTCGATGTGAAGCCGCGCTTGCAGAAAACGGCCTAATTGTCTTGCAG 2223
Query 2524 TTCATATCGATACCCGAAGAGCGTTACAATGAGTACAGACTAAGTTCAGATTTCATTAAA 2583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2224 TTCATATCGATACCCGAAGAGCGTTACAATGAGTACAGACTAAGTTCAGATTTCATAAAA 2283
Query 2584 GAATACATATTCCCTGGTGGATGCCTTCCTTCTTTAGCCAGAGTCACTACAGCCATGTCC 2643
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 2284 GAATACATATTCCCTGGTGGATGCCTTCCTTCTTTAGCCAGAGTTACTTCAGCCATGTCC 2343
Query 2644 TCTTCTTCTAGGCTATGCATCGAACATGTTGAGAACATTGGGATTCATTACTACCAAACA 2703
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2344 TCTTCTTCTAGGCTATGCATTGAACACGTTGAGAACATTGGGATTCATTACTACCAAACA 2403
Query 2704 TTGAGATTGTGGAGGAAGAACTTCTTGGCGAGACAGAAACAAATCATGGCTCTTGGATTT 2763
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2404 TTGAGAGTGTGGAGGAAGAACTTCTTGGAGAGACAGAAACAAATCATGGCTCTTGGATTT 2463
Query 2764 GATGACAAATTCGTAAGGACGTGGGAATATTATTTTGATTATTGCGCAGCTGGATTCAAG 2823
||||| |||||| ||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct 2464 GATGATAAATTCATAAGGACATGGGAATATTATTTCGATTATTGTGCAGCTGGTTTCAAG 2523
Query 2824 ACTCTTACTCTTGGAAACTACCAGTTGGTGTTCTCGCGTCCAGGGAACGTAGCTGCATTT 2883
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2524 ACTCTTACCCTTGGAAACTACCAGTTGGTGTTCTCGCGCCCAGGGAACGTAGCTGCATTC 2583
Query 2884 GCGGATTCATACAGAGGATTCCCTTCTGCTTATTGTGTCACCTGAGAGGCATCCACAACG 2943
|||||||||||| ||||||||||||| |||||||||||| | |||||| || |||||
Sbjct 2584 GCGGATTCATACCGAGGATTCCCTTCCGCTTATTGTGTCTCTTGAGAG-CA---ACAACA 2639
Query 2944 TTTGATTGC 2952
|||||||||
Sbjct 2640 TTTGATTGC 2648
> Ahg905398 jgi|Araly1|905398|Al_scaffold_0003_2526
Length=1026
Score = 863 bits (467), Expect = 0.0
Identities = 664/759 (87%), Gaps = 13/759 (2%)
Strand=Plus/Plus
Query 2134 TCGGATGATGAGGATCTGAGA-ACTGCACAGATGAGAAAAATCTCGCTTCTGATTGATAA 2192
|||| |||||| ||| | | | |||||||| ||||||||||| | ||||| ||||||||
Sbjct 265 TCGGCTGATGAAGAT-TTAAAGACTGCACAAATGAGAAAAATATATCTTCTCATTGATAA 323
Query 2193 GGCGAGAATAGAGAAGGACCACGAGGTTTTAGAGATAGGATGTGGATGGGGAACTTTGGC 2252
| |||| ||||||||| |||| ||||| ||||| || ||||| |||||||||||||||||
Sbjct 324 GTCGAGGATAGAGAAGAACCATGAGGTCTTAGATATTGGATGCGGATGGGGAACTTTGGC 383
Query 2253 CATAGAAGTTGTGAGAAGAACTGGATGCAAATACACCGGGATTACGCTATCTATTGAACA 2312
|||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 384 CATAGAAGCTGTGAGAAGAACTGGATGCAAATATACCGGTATTACGCTATCAATTGAACA 443
Query 2313 GCTTAAATATGCTGAAGAAAAAGTGAAAGAAGCTGGACTTCAGGACTGGATTACTTTTGA 2372
||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||| ||| |
Sbjct 444 ACTTAAGTATGCAGAAGAAAAAGTGAAACAAGCTGGACTTCAGGACCGGATTACGTTTAA 503
Query 2373 GCTCCGCGATTATCGCCAACTATCTGATGCTCAGAAATATGACAGAATTATATCTTGCGA 2432
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 504 GCTCTGCGATTATCGCCAACTATCTGATGCTCAAAAATATGACAGAATTATATCTTGCGA 563
Query 2433 GATGCTAGAAGC-GGTCGGACATGAGTTCATGGAGATGTTTTTCAGTCGA-TGTGAAGCC 2490
|| ||||||| | || || || | |||||||||| |||||||||| | ||||||||
Sbjct 564 GAGGCTAGAA-CATGTTGGCCACAAATTCATGGAGACATTTTTCAGTC-ACTGTGAAGCT 621
Query 2491 GCACTTGCAGAAAATGGCCTAATAGTCTTGCAGTTCATATCGATACCCGAAGAGCGTTAC 2550
|| ||||| ||| | ||| | | ||||||| ||| ||||||||||||||||| ||||||
Sbjct 622 GCGCTTGCGGAAGACGGCATTTTTGTCTTGCTGTTTATATCGATACCCGAAGAACGTTAC 681
Query 2551 AATGAGTACAGACTAAGTTCAGATTTCATTAAAGAATACATATTCCCTGGTGGATGCCTT 2610
|||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 682 AATGAGTACAGACTAAATTCAGATTTCATAAAAGAATACATATTCCCAGGTGGATGCCTT 741
Query 2611 CCTTCTTTAGCCAGAGTCACTACAGCCATGTCCTCTTCTTCTAGGCTATGCATCGAACAT 2670
||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 742 CCTTCTTTAGCCAGAGTTACTTCAGCCATGTCCTCTTCTTCTAGGCTATGCATTGAACAT 801
Query 2671 GTTGAGAACATTGGGATTCATTACTACCAAACATTGAGATTGTGGAGGAAGAACTTCTTG 2730
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 802 GTTGAGAACATTGGGATTCATTACTACCAAACGCTGAGATTGTGGAGGAAGAATTTCTTG 861
Query 2731 GCGAGACAGAAACAAATCATGGCTCTTGGATTTGATGACAAATTCGTAAGGACGTGGGAA 2790
| |||||| ||||||||||| | ||||||||| || || |||||| | |||| ||||||
Sbjct 862 GAGAGACAAAAACAAATCATCGATCTTGGATTCGACGATAAATTCATTAGGATATGGGAA 921
Query 2791 TATTATTTTGATTATTGCGCAGCTGGATTCAAGACTCTTAC--T----C-TTGGAAACTA 2843
|||||||| || ||||| |||||||| |||||||||||||| | | ||||| ||||
Sbjct 922 TATTATTTCGACTATTGTGCAGCTGGTTTCAAGACTCTTACCCTTGGTCCTTGGAGACTA 981
Query 2844 CCAGTTGGTGTTCTCGCGTCCAGGGAACGTAGCTGCATT 2882
|||| | | ||||| |||||||||||||||| ||||||
Sbjct 982 CCAGATATTTTTCTCACGTCCAGGGAACGTAGTTGCATT 1020
> Ahg359447 jgi|Araly1|359447|fgenesh1_pg.C_scaffold_242000003
Length=642
Score = 553 bits (299), Expect = 3e-156
Identities = 399/448 (89%), Gaps = 4/448 (1%)
Strand=Plus/Plus
Query 2194 GCGAGAATAGAGAAGGACCACGAGGTTTTAGAGATAGGATGTGGATGGGGAACTTTGGCC 2253
||||| ||||||||| |||| ||||||||||| || ||||| ||||||||||||||||||
Sbjct 1 GCGAGGATAGAGAAGAACCATGAGGTTTTAGATATTGGATGCGGATGGGGAACTTTGGCC 60
Query 2254 ATAGAAGTTGTGAGAAGAACTGGATGCAAATACACCGGGATTACGCTATCTATTGAACAG 2313
||||||| |||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 61 ATAGAAGCTGTGAGAAGAACTGGATGCAAATATACTGGTATTACGCTATCTATTGAACAA 120
Query 2314 CTTAAATATGCTGAAGAAAAAGTGAAAGAAGCTGGACTTCAGGACTGGATTACTTTTGAG 2373
||||| ||||| ||||||||||| ||| || |||||||||||||| ||||||| ||| ||
Sbjct 121 CTTAAGTATGCAGAAGAAAAAGTAAAACAAACTGGACTTCAGGACCGGATTACGTTTAAG 180
Query 2374 CTCCGCGATTATCGCCAACTATCTGATGCTCAGAAATATGACAGAATTATATCTTGCGAG 2433
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTCTGCGATTATCGCCAACTATCTGATGCTCAAAAATATGACAGAATTATATCTTGCGAG 240
Query 2434 ATGCTAGAAGCG-GTCGGACATGAGTTCATGGAGATGTTTTTCAGTCGA-TGTGAAGCCG 2491
||||||||| | || || || | |||||||||| |||||||||| | |||||||| |
Sbjct 241 ATGCTAGAA-CATGTTGGCCACAAATTCATGGAGACATTTTTCAGTC-ACTGTGAAGCTG 298
Query 2492 CACTTGCAGAAAATGGCCTAATAGTCTTGCAGTTCATATCGATACCCGAAGAGCGTTACA 2551
| ||||| ||| | ||| | | ||||||||||| ||||||||||||||||| |||||||
Sbjct 299 CGCTTGCGGAAGACGGCATTTTTGTCTTGCAGTTTATATCGATACCCGAAGAACGTTACA 358
Query 2552 ATGAGTACAGACTAAGTTCAGATTTCATTAAAGAATACATATTCCCTGGTGGATGCCTTC 2611
||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 359 ATGAGTACAGACTAAATTCAGATTTCATAAAAGAATACATATTCCCAGGTGGATGCCTTC 418
Query 2612 CTTCTTTAGCCAGAGTCACTACAGCCAT 2639
|||||||||||||||| ||| |||||||
Sbjct 419 CTTCTTTAGCCAGAGTTACTTCAGCCAT 446
> Ahg887823 jgi|Araly1|887823|Al_scaffold_0242_1
Length=543
Score = 531 bits (287), Expect = 2e-149
Identities = 313/326 (96%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 502 GTTACATATCCAAACATGATGGAGTTCTTCGAGAATCTTGGAGTAGAGATGGAGGTTTCA 561
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 160 GTTACATATCCAAACATGATGGAGTTCTTCGAGAACCTTGGAGTAGACATGGAGGTTTCA 219
Query 562 GACATGTCTTTCGCAGTGAGCCTTGACAATGGGAAAGGTTGTGAATGGGGAAGCCGCAAC 621
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 220 GACATGTCTTTCGCAGTGAGCCTTGACAATGGCAAAGGTTGTGAATGGGGAAGCCGCAAC 279
Query 622 GGTGTCTCGGGCTTATTTGCTCAGAAGAAGAACGTTTTAAATCCGTATTTCTGGCAAATG 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GGTGTCTCGGGCTTATTTGCTCAGAAGAAGAACGTTTTAAATCCGTATTTCTGGCAAATG 339
Query 682 ATCAGAGAAATTGTTAGATTTAAAGAAGACGTCTTAAAGTACATTGAGGAGCTTGAGGGT 741
||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct 340 ATCAGAGAAATTGTTAGATTTAAAGAAGAGGTTTTAAAATACATCGAGGAGCTTGAGGGT 399
Query 742 AACCCCGATATTGATCGAAAGGAAACATTAGGAGAATTTCTCAATTCACGTGGATACTCT 801
|||||||||||||||||||||||||| ||||||||||| |||||| | || |||||||||
Sbjct 400 AACCCCGATATTGATCGAAAGGAAACCTTAGGAGAATTCCTCAATGCTCGCGGATACTCT 459
Query 802 GAGTTGTTTCAGCAAGCTTACTTGGT 827
|||||||||||| |||||||||||||
Sbjct 460 GAGTTGTTTCAGAAAGCTTACTTGGT 485
Score = 182 bits (98), Expect = 2e-44
Identities = 104/107 (97%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 346 AGTGGAATAAGTGGATTAGGAAGTGCTTACGTACTTGCGAATCAAGGAGTTAAAGAAGTT 405
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 55 AGTGGAATAAGTGGATTAGGGAGTGCTTACGTACTTGCAAATCAAGGAGTTAAAGAAGTT 114
Query 406 GTGTTATACGAGAAAGAAGAGTCATTAGGAGGTCATGCTAAAACGGT 452
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GTGTTGTACGAGAAAGAAGAGTCATTAGGAGGTCATGCTAAAACGGT 161
Score = 76.8 bits (41), Expect = 9e-13
Identities = 50/54 (93%), Gaps = 1/54 (2%)
Strand=Plus/Plus
Query 2 ATGTGGCTTGGCTTATCTCCTCAGCACAAGTGTTTCCTCTTTA-CTCTTCAAAT 54
||||||||||||||||||||||||||||||||||||||||| | ||| || |||
Sbjct 1 ATGTGGCTTGGCTTATCTCCTCAGCACAAGTGTTTCCTCTTAAACTCATCCAAT 54
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120022361995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5