BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23790.1
Length=2381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930437 jgi|Araly1|930437|scaffold_302894.1 3537 0.0
Ahg947004 jgi|Araly1|947004|scaffold_703233.1 1744 0.0
> Ahg930437 jgi|Araly1|930437|scaffold_302894.1
Length=2209
Score = 3537 bits (1915), Expect = 0.0
Identities = 2114/2212 (96%), Gaps = 6/2212 (0%)
Strand=Plus/Plus
Query 82 AACCTCTTATCTCCTCAGCCATGGCTTCAACGTCTCTCGGAGCTTCGATTCTCGTTTCTC 141
|||| ||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1 AACCCCTTCTCTCATCAGCCATGGCTTCACCGTCTCTGGGAGCTTCGATTCTCGTTTCTC 60
Query 142 ACTGCTCCTCAGCTCCTGAATTTCAAGTTTCTGGGATGAGATTGGTGTTTGGTTACAAGG 201
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGCTCCTCTGTTCCTGAATTTCAAGTTTCTGGGATGAGATTGGTGTTTGGTTACAAGG 120
Query 202 CTTTTGGCT-GCAGAACTTCACGCAGGGGATTTCGAGTTCGCTGCGAATCCAAGATTCAG 260
|||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 121 GTTTTGG-TCGCAGAACTTCACGCAAGGGATTTCGAGTTCGCTGCGAGTCCAAGATTCAG 179
Query 261 GAGAAGGAGTTAAGGCGGTGTTCGCCATTCTTAGAACGCTTATCATTGCCAAGGGAGGCT 320
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 180 GAGAAGGAGTTAAGGCGGTGCTCGCCATTCTTGGAACGCTTATCATTGCCAAGGGAGGCT 239
Query 321 GCTTTGAGCTCTAATGAATGGAAGTCTGTTCCTGATATTTGGAGATCATCTGTGGAGAAG 380
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 GCTTTGAGCTCTAATGAATGGAAGGCTGTTCCTGATATTTGGAGATCATCTGTGGAGAAG 299
Query 381 TACGGTGACAGAGTTGCGGTGGTAGATCCGTATCATGACCCGCCTTCTACATTCACGTAC 440
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 300 TACGGTGACAGAGTTGCGGTGGTGGATCCGTATCATGACCCGCCTTCTACATTCACTTAC 359
Query 441 AGACAGTTGGAACAAGAAATCTTGGACTTTGTTGAGGGTTTACGAGTCGTTGGAGTGAAA 500
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 360 AGACAGTTGGAACAAGAAATCTTGGACTTTGTTGAGGGTTTGCGAGTTGTTGGAGTGAAC 419
Query 501 GCAGACGAGAAGATTGCACTTTTTGCTGATAACTCCTGTCGATGGCTTGTTGCGGATCAA 560
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 420 GCAGATGAGAAGATTGCACTTTTTGCTGATAACTCCTGTCGGTGGCTTGTTGCTGATCAA 479
Query 561 GGTATAATGGCCACAGGAGCAGTCAATGTTGTTAGAGGATCCAGATCGTCTGTGGAAGAG 620
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 480 GGTATAATGGCCACAGGAGCAGTCAATGTTGTTAGAGGATCCAGATCCTCTGTTGAAGAG 539
Query 621 TTATTGCAGATATACTGTCATTCGGAAAGTGTAGCCCTTGTTGTGGATAACCCTGAGTTT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTATTGCAGATATACTGTCATTCGGAAAGTGTAGCCCTTGTTGTGGATAACCCTGAGTTT 599
Query 681 TTCAATCGCATTGCGGAGTCATTTTCTTACAAGGCAGCTCCAAAATTTGTGATTCTTCTC 740
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 600 TTCAACCGCATTGCTGAGTCATTTTCTTACAAGGCGGCTCCAAAATTTGTGATTCTTCTC 659
Query 741 TGGGGGGAAAAATCGTCGTTGGTTACAGCGGGTAGGCACACACCAGTCTATAGTTACAAC 800
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGGGGGGAAAAATCGTCATTGGTTACAGCGGGTAGGCACACACCAGTCTATAGTTACAAT 719
Query 801 GAAATTAAAAAGTTTGGACAAGAGAGACGTGCAAAATTTGCAAGATCTAATGAT-TCTGG 859
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 720 GAAATTAAACAGTTTGGACAAGAGAGACGTGCAAAATTTGCAAGATCTAATGATGT-TGG 778
Query 860 GAAGTATGAATATGAATACATCGATCCAGATGATATAGCCACAATTATGTATACCAGTGG 919
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 779 GAAGTATGAATATGAATTCATCCATCCAGATGATACAGCCACAATTATGTATACCAGCGG 838
Query 920 AACCACAGGAAATCCAAAAGGTGTTATGCTCACACATCAGAATTTGTTACACCAGATAAG 979
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 839 AACCACTGGAAATCCAAAAGGTGTTATGCTCACACATCAGAATTTGTTGCACCAGATAAG 898
Query 980 AAACTTGTCCGATTTTGTGCCTGCGGAAGCTGGGGAAAGATTTCTGAGTATGTTGCCATC 1039
||| || || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 899 AAATTTATCTGACTTTGTGCCTGCGGAAGCTGGGGAAAGATTTCTAAGTATGTTGCCATC 958
Query 1040 ATGGCATGCTTATGAACGGGCTTGTGAATACTTCATATTTACATGTGGAGTTGAGCAAAA 1099
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTGGCATGCCTATGAACGGGCTTGTGAATACTTCATATTTACATGTGGAGTTGAGCAAAA 1018
Query 1100 GTATACGTCTATAAGATTCTTAAAGGATGATCTCAAGCGTTATCAACCACACTATCTTAT 1159
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 GTATACGTCTATAAGATTCTTAAAGGATGATCTCAAGCGGTATCAACCACACTATCTTAT 1078
Query 1160 TTCAGTTCCTTTAGTATATGAGACACTCTACAGCGGGATTCAAAAGCAAATTTCTG-CAA 1218
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1079 TTCAGTACCTTTAGTATATGAGACACTCTACAGCGGGATTCAAAAGCAAATTTC-GACAA 1137
Query 1219 GCTCCCCTGCTCGTAAATTTTTGGCACTTACATTGATCAAAGTCAGCCTGGCATATACGG 1278
||||||||| |||||||||||| || ||||| |||||||||||||||||||||||||| |
Sbjct 1138 GCTCCCCTGTTCGTAAATTTTTAGCGCTTACGTTGATCAAAGTCAGCCTGGCATATACTG 1197
Query 1279 AAATGAAAAGAGTTTATGAGGGTCTTTGTTTGACAAAAAATCAAAAGCCTCCAATGTATA 1338
| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 AGATGAAAAGAATTTATGAGGGTCTTTGTTTGACAAAAAATCAAAAGCCTCCGTTGTATA 1257
Query 1339 TTGTTTCGTTGGTGGATTGGTTGTGGGCGAGAGTAGTTGCATTTTTCCTATGGCCATTGC 1398
||||||||||||| |||||||||||| ||||||||||||| ||| |||| ||||||||||
Sbjct 1258 TTGTTTCGTTGGTAGATTGGTTGTGGACGAGAGTAGTTGCGTTTGTCCTTTGGCCATTGC 1317
Query 1399 ATATGTTGGCTGAAAAGCTTGTACACAGAAAAATTCGTTCGTCTATTGGGATAACAAAGG 1458
||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1318 ATATGTTAGCTGAAAAGCTTGTGCACAAAAAAATTCGTTCGTCTATTGGGATAACAAAGG 1377
Query 1459 CTGGTGTTAGTGGAGGTGGTAGTTTACCTATGCATGTTGACAAGTTTTTTGAGGCCATCG 1518
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1378 CTGGTGTTAGTGGAGGTGGTAGTTTACCTATGCATGTTGACAAGTTCTTCGAGGCCATCG 1437
Query 1519 GTGTGAATGTACAAAATGGGTATGGTTTGACAGAAACCTCACCGGTTGTCTCTGCGCGGA 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GTGTGAATGTACAAAATGGGTATGGTTTGACAGAAACCTCACCGGTTGTCTCTGCGCGGA 1497
Query 1579 GGCTTAGGTGTAACGTTCTTGGCTCAGTTGGGCATCCTATTAAAGATACAGAGTTCAAAA 1638
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1498 GGCTTAGGTGTAATGTTCTTGGCTCAGTTGGGCATCCTATTAAAGATACAGAATTCAAAA 1557
Query 1639 TTGTAGATCATGAGACTGGTACTGTTCTTCCACCTGGTTCAAAGGGCATTGTCAAAGTCA 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TTGTAGATCATGAGACTGGTACTGTTCTTCCACCTGGTTCAAAGGGCATTGTCAAAGTCA 1617
Query 1699 GAGGCCCACCGGTGATGAAAGGTTACTACAAGAATCCACTGGCCACCAAGCAGGTTATAG 1758
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1618 GAGGCCCACCGGTGATGAAAGGTTACTACAAGAATCCGCTGGCCACCAAGCAAGTTATAG 1677
Query 1759 ATGACGATGGATGGTTCAATACTGGAGATATGGGTTGGATTACTCCTCAGCACTCAACAG 1818
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1678 ATGACGATGGATGGTTCAATACTGGGGATATGGGTTGGATTACTCCTCAGCATTCAACAG 1737
Query 1819 GACGGAGTCGTAGCTGTGGAGGTGTCATCGTTCTTGAAGGGCGTGCCAAGGACACTATCG 1878
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1738 GACGGAGTCGTAGCTGTGGAGGTGTCATCGTTCTTGAAGGCCGTGCCAAGGACACAATCG 1797
Query 1879 TGCTTTCCACAGGTGAAAATGTGGAACCATTGGAGATTGAAGAAGCGGCCATGAGAAGCA 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TGCTTTCCACAGGTGAAAATGTGGAACCATTGGAGATTGAAGAAGCGGCCATGAGAAGCA 1857
Query 1939 ATTTGATTCAACAAATAGTGGTTATTGGACAGGATCAACGCCGCCTTGGAGCTATTGTTA 1998
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1858 ATTTGATACAACAAATAGTGGTTTTTGGACAGGATCAACGCCGCCTTGGAGCTATTATTA 1917
Query 1999 TCCCAAACAAAGAAGCAGCAGAAGGAGCAGCAAAGCAGAAAATTTCACCTGTAGATTCTG 2058
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 1918 TCCCAAACAAAGAAGCAGCAGAAGGAGCAGCAAAGCAGAATATTCCACCTGTAGATCCTG 1977
Query 2059 AAGTCAATGAACTTAGCAAGGAGACGATAACAAGCATGGTCTATGAAGAACTAAGGAAAT 2118
||||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1978 AAGTCAACAAACTTAGCAAGGAGACGATAACGAGCATGGTCTACGAAGAACTGAGGAAAT 2037
Query 2119 GGACGTCACAATGCTCGTTCCAAGTTGGACCAGTTCTGATCGTGGATGAACCATTCACGA 2178
|||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 2038 GGACATCACAATGCTCGTTCCAAGTTGGACCGGTTCTGATCGTGGATGAGCCCTTCACGA 2097
Query 2179 TAGACAACGGTTTAATGACACCGACAATGAAAATAAGACGGGACAAGGTGGTTGATCAAT 2238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 TAGACAACGGTTTAATGACGCCGACAATGAAAATAAGACGGGACAAGGTGGTTGATCAAT 2157
Query 2239 ACAAGAATGAAATAGAAAGACTCTACAAGTAGACTAGAAATTTTAGCATCCT 2290
||||| |||||||||| ||||||||||||||||||||| |||||| |||||
Sbjct 2158 ACAAGGATGAAATAGATAGACTCTACAAGTAGACTAGACGTTTTAGTATCCT 2209
> Ahg947004 jgi|Araly1|947004|scaffold_703233.1
Length=2225
Score = 1744 bits (944), Expect = 0.0
Identities = 1504/1771 (85%), Gaps = 52/1771 (3%)
Strand=Plus/Plus
Query 281 TTCGCCA-TTCTTAGAACGCTTATCATTGCCAAGGGAGG--CTGCTTTGAGCTCTAATGA 337
||||||| ||||| ||| ||| ||||| | |||||| |||||||| ||||||||||
Sbjct 249 TTCGCCAGTTCTT-GAAAGCTCGTCATTATC--GGGAGGTTCTGCTTTGCGCTCTAATGA 305
Query 338 ATGGAAGTCTGTTCCTGATATTTGGAGATCATCTGTGGAGAAGTACGGTGACAGAGTTGC 397
||||||| ||||||||||||||||||||||||||| || |||| ||||| ||||||||
Sbjct 306 ATGGAAGGCTGTTCCTGATATTTGGAGATCATCTGCAGAAAAGTTTGGTGATAGAGTTGC 365
Query 398 GGTGGTAGATCCGTATCATGACCCGCCTTCT-ACATTCACGTAC-AGACAGTTGGAACAA 455
|||| ||||| |||||||| || |||| | | | | |||||| || |||||||||||
Sbjct 366 ATTGGTTGATCCTTATCATGATCCTCCTT-TGAAACTGACGTACAAG-GAGTTGGAACAA 423
Query 456 GAAATCTTGGACTTTGTTGAGGGTTTACGAG-TCGTTGGAGTGAAAGCAGACGAGAAGAT 514
||||| |||||||||| ||| || ||||||| || |||||||||||||||| ||||||||
Sbjct 424 GAAATTTTGGACTTTGCTGAAGGCTTACGAGTTC-TTGGAGTGAAAGCAGATGAGAAGAT 482
Query 515 TGCACTTTTTGCTGATAACTCCTGTCGATGGCTTGTTGCGGATCAAGGTATAATGGCCAC 574
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 483 TGCACTTTTTGCTGATAACTCCTGTCGATGGCTTGTTTCAGATCAAGGTATAATGGCCAC 542
Query 575 AGGAGCAGTCAATGTTGTTAGAGGATCCAGATCGTCTGTGGAAGAGTTATTGCAGATATA 634
|||||||||||||||||| |||||||| || || ||||| ||||||||| ||||||| ||
Sbjct 543 AGGAGCAGTCAATGTTGTCAGAGGATCTAGGTCCTCTGTTGAAGAGTTACTGCAGATTTA 602
Query 635 CTGTCATTCGGAAAGTGTAGCCCTTGTTGTGGATAACCCTGAGTTTTTCAATCGCATTGC 694
| ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 603 CCGTCATTCTGAAAGTGTAGCCCTTGTTGTGGATAATTCTGAGTTTTTCAACCGCATTGC 662
Query 695 GGAGTCATTTTCTTACAA-GGCAGCTCCAAAATTTGTGATTCTTCTCTGGGGGGAAAAAT 753
||||| ||| ||| ||| |||| ||| | |||| |||| ||||| ||||| || ||||
Sbjct 663 TGAGTCGTTTACTT-CAAAGGCATCTCTGAGATTTTTGATACTTCTTTGGGGTGAGAAAT 721
Query 754 CGTCGTTGGTTACAGC-GGGTAGGCACACACCAGTCTATAGTTA--CAACGAAATTAAAA 810
| || ||||| ||| | ||| | ||| | ||||| || | ||| || ||||| ||||
Sbjct 722 CATCATTGGTCACA-CAGGGGATGCAGATTCCAGTTTACACTTATGCA--GAAATAAAAA 778
Query 811 AGTTTGGACAAGAGAGACGTGCAAAATT-TGCAAGATCTAATGATTCTGGGAAG-TAT-G 867
|| ||||| ||||| ||||||||||| | || ||||||||||| | ||| | ||| |
Sbjct 779 AGCAAGGACAGGAGAGTCGTGCAAAATTAT-CAGGATCTAATGATACCAGGA-GCTATAG 836
Query 868 AATATGAATACATCGATCCAGATGATATAGCCACAATTATGTATACCAGTGGAACCACAG 927
|| || ||| |||| || ||||||||| |||| ||||||||||||||||||| ||||| |
Sbjct 837 AA-ATCAATTCATCAATTCAGATGATACAGCCGCAATTATGTATACCAGTGGTACCACGG 895
Query 928 GAAATCCAAAAGGTGTTATGCTCACACATCAGAAT-TTGTTACACCAGATAAGAA-A-CT 984
||||||| ||||| |||||||| ||||||| |||| || ||||||||||||| || | ||
Sbjct 896 GAAATCCGAAAGGCGTTATGCTTACACATCGGAATCTT-TTACACCAGATAA-AACATCT 953
Query 985 TGTCCGATTTTGTGCCTGCGGAAGCTGGGGA-AAGATTTCTGAGTATGTTGCCATCATGG 1043
||| | | ||| ||||| |||||||||| || |||||| || ||| |||| ||||||
Sbjct 954 A-TCCAAATATGTACCTGCTCAAGCTGGGGATAA-ATTTCTAAGCATGCTGCCGTCATGG 1011
Query 1044 CATGCTTATGAACGGGCTTGTGAATACTTCATATTTACATGTGGAGTTGAGCAAAAGTAT 1103
||||| |||||||| ||| |||||||||||||||| || |||||||||||||||| ||||
Sbjct 1012 CATGCCTATGAACGTGCTAGTGAATACTTCATATTCACTTGTGGAGTTGAGCAAATGTAT 1071
Query 1104 ACGTCTATAAGAT-TCTTAAAGGATGATCTCAAGCGTTATCAACCACACTATCTTATTTC 1162
|| |||||||||| | |||||||||||||| ||||| ||||||||| ||||| || ||||
Sbjct 1072 ACTTCTATAAGATAT-TTAAAGGATGATCTAAAGCGGTATCAACCAAACTATATTGTTTC 1130
Query 1163 AGTTCCTTTAGTATATGAGACACTCTACAGCGGGATTCAAAAGCAAATTTCTGCAAGCTC 1222
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 1131 CGTTCCTTTAGTATATGAGACACTTTACAGTGGGATTCAAAAGCAAATTTCTGCAAGTTC 1190
Query 1223 CCCTG-CTCGTAAATTTTTGGCACTTACATTGATCAAAGTCAGCCTGGCATATACGGAAA 1281
||| | ||||||||| | |||||||||||||||| |||||| ||||||||| ||| |
Sbjct 1191 TGCTGGC-CGTAAATTTCTAGCACTTACATTGATCAGAGTCAGTATGGCATATATGGAGA 1249
Query 1282 TGAAAAGAGTT-TATGAGGGTCTTTGTTTGACAAAAAATCAAAAGCCTCCAATGTATATT 1340
||||||| | | ||||||||| | ||| |||||||| | |||||||||||||||||||||
Sbjct 1250 TGAAAAG-GATATATGAGGGTATGTGTCTGACAAAAGAGCAAAAGCCTCCAATGTATATT 1308
Query 1341 GTTTCGTTGGTGGATTGGTTGTGGGCGAGAGTAGTTGCATTT-TTCCTATGGCCATTGCA 1399
||| | || ||||||||||||||||||||||||||||| | || | |||||||| ||
Sbjct 1309 GTTGCTTTTGTGGATTGGTTGTGGGCGAGAGTAGTTGC-TGCCTTATTGTGGCCATTACA 1367
Query 1400 TATGTTGGCTGAAAAG-CTTGTAC-ACA-GAAAAATTCGTTCGTCTATTGGGATAACAAA 1456
||||||||| ||||| ||| | | ||| ||||| ||| |||||||||||| ||| | ||
Sbjct 1368 TATGTTGGCC-AAAAGGCTTAT-CTACAAGAAAA-TTCATTCGTCTATTGGAATATCTAA 1424
Query 1457 GGCTGGTGTTAGTGGAGGTGGTAGTTTACCTATGCATGTTGACAAGTTTTTTGAGGCCAT 1516
||||||| |||| ||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1425 GGCTGGTATTAGCGGAGGGGGTAGTTTACCCATTCATGTTGACAAGTTTTTTGAGGCCAT 1484
Query 1517 CGGTGTGAATGTACAAAATGGGTATGGTTTGACAGAAACCTCACCGGTTGTCTCTGCGCG 1576
|||||||| | |||||||||| |||||||||||||| ||||| |||||||||| ||| ||
Sbjct 1485 CGGTGTGATTCTACAAAATGGTTATGGTTTGACAGAGACCTCGCCGGTTGTCTGTGCACG 1544
Query 1577 GAGGCTTAGGTGTAACGTTCTTGGCTCAGTTGGGCATCCTATTAAAGATACAGAGTTCAA 1636
|| |||||| ||||| ||||||||||||| ||||||||| || | | |||||| |||||
Sbjct 1545 GACGCTTAGCTGTAATGTTCTTGGCTCAGCTGGGCATCCAATGCATGGTACAGAATTCAA 1604
Query 1637 AATTGTAGATCATGAGACTGGTACTGTTCTTCCACCTGGTTCAAAGGGCATTGTCAAAGT 1696
||||||||||| ||||||| || ||| || || |||||||||||||||||| |||||||
Sbjct 1605 AATTGTAGATCCTGAGACTAATAATGTACTCCCTCCTGGTTCAAAGGGCATTATCAAAGT 1664
Query 1697 CAGAGGCCCACCGGTGATGAAAGGTTACTACAAGAATCCACTGG-CCACCAAGCAGGTTA 1755
|||||| |||| | | ||||| ||||| || ||||||||| | | |||| ||||| |||
Sbjct 1665 CAGAGGTCCACAGATTATGAAGGGTTATTATAAGAATCCA-TCGACCACAAAGCAAGTTC 1723
Query 1756 TAGATGACGA-TGGATGGTTCAATACTGGAGATATGGGTTGGATTACTCCTCAGCACTCA 1814
|| |||| || ||||||||||||||| ||||||| ||||||||| ||||||| ||||||
Sbjct 1724 TAAATGA-GAGTGGATGGTTCAATACAGGAGATACGGGTTGGATCGCTCCTCATCACTCA 1782
Query 1815 ACAGGACGGAGTCGTAGCTGTGGAGGTGTCATCGTTCTTGAAGGGCGTGCCAAGGACACT 1874
| ||| |||||||| |||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1783 AGAGGGCGGAGTCGCCGCTGTGGAGGTGTCATCGTTCTTGAAGGCCGTGCAAAAGACACA 1842
Query 1875 ATCGTGCTTTCCACAGGTGAAAATGTGGAACCATTGGAGATTGAAGAAGCGGCCATGAGA 1934
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1843 ATTGTACTTTCCACAGGTGAAAACGTGGAACCATTGGAGATTGAAGAAGCGGCCATGAGA 1902
Query 1935 AGCAATTTGATTCAACAAATAGTGGTTATTGGACAGGATCAACGCCGCCTTGGAGCTATT 1994
|||| |||||| ||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 1903 AGCAGGTTGATTGAACAAATCGTTGTTATTGGACAGGATCGACGCCGCCTTGGAGCTATC 1962
Query 1995 GTTATCCCAAACAAAGAAGCAGCAGAAGGAG 2025
|||| ||||||||||| | |||| || |||
Sbjct 1963 ATTATTCCAAACAAAGAGGAAGCACAAAGAG 1993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89702526975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5