BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23820.1 Length=2019 Score E Sequences producing significant alignments: (Bits) Value Ahg930439 jgi|Araly1|930439|scaffold_302896.1 2348 0.0 > Ahg930439 jgi|Araly1|930439|scaffold_302896.1 Length=1428 Score = 2348 bits (1271), Expect = 0.0 Identities = 1369/1416 (97%), Gaps = 7/1416 (0%) Strand=Plus/Plus Query 183 TTATATCAAATAGACGAAAATGCCCCTGTCGGCGACGGCGGATACAAGCAAGACGGTGAA 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 TTATATCAAATAGACGAAAATGCCCCTGTCGGCGACGGCGGATACAAGCAAGACGGTGAA 63 Query 243 GCTGGAGAGGTACAATAGCTACCTCCGGAAGATTCACAGCACCAAAGTTCTCAACGCTTC 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 GCTGGAGAGGTACAATAGCTACCTCCGGAAGATTCACAGCACCAAAGTTCTCAACGCTTC 123 Query 303 TTCTAAAGTTCTTTTCCGAGCAACGCTTCTCGTAGCTCTTGTCCTCGTCCTCATCTTCGC 362 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 124 TTCTAAAGTTCTTTTCCGAGCAACGCTCCTCGTAGCTCTTGTCCTCGTCCTCCTCTTCGC 183 Query 363 CATCAACTACCCTCCACTCTCCGATAGCCGCGCCGCCGCAGCACACCACCTCCACCGTCG 422 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 184 TATCAACTACCCTCCACTCTCCGACAGCCGCGCCGCCGCGGCACACCACCTCCACCGTCG 243 Query 423 TAGCTTCTTATCCACCGGActcttctcctcctc--c-tcttcttcctcctctATCGGTGG 479 ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| Sbjct 244 TAGCTTCTTATCCACCGGACTCTTCTCCTCCTCTTCCTCTTCCTCCTCCTCTATCGGTGG 303 Query 480 AGCCGCGTGGGAAAAGCGCGTTAGACAATCCTCAACAGCCAAACGACCACACGGTCTCTC 539 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 304 AGCCGCGTGGGAAAAGCGCGTCAGACAATCCTCAACAGCCAAACGACCACACGGTCTCTC 363 Query 540 CGTCCTAGTCACCGGAGCTGCCGGATTCGTCGGATCCCACTGCTCACTTGCGCTGCGAAA 599 |||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||| Sbjct 364 CGTCCTAGTCACCGGAGCTGCCGGCTTTGTCGGATCCCACTGCTCACTTGCTCTACGAAA 423 Query 600 ACGTGGCGATGGAGTCTTAGGATTCGACAACTTCAACGATTACTATGACCCATCACTCAA 659 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 424 ACGTGGCGATGGAGTCTTAGGATTCGACAACTTCAACGATTACTACGACCCATCACTCAA 483 Query 660 AAGAGCAAGACAAGAGCTCTTGGAGAAACAACAAGTGTTCATCGTCGAAGGTGATCTCAA 719 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 484 AAGAGCAAGACAAGAGCTCTTAGAGAAGCAACAAGTGTTCATCGTCGAAGGTGATCTCAA 543 Query 720 CGATGGACCACTCTTACGTAAACTCTTCGACGTTGTCCCTTTCACTCACATCCTTCACTT 779 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 544 CGATGGACCACTCTTACGTAAACTCTTCGATGTTGTTCCTTTCACTCACATCCTTCACTT 603 Query 780 AGCCGCTCAAGCCGGAGTACGTTACGCTATGAAAAACCCTCAATCTTACATCGCCTCCAA 839 ||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||| Sbjct 604 AGCCGCTCAAGCCGGAGTACGCTACGCTATGAAAAACCCTCAGTCCTACATCGCATCCAA 663 Query 840 CATCGCCGGATTCGTTAACCTTCTTGAAGTGGCTAAAGCAGCTAATCCACAACCTGCGAT 899 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 664 CATCGCCGGATTCGTTAACCTCCTTGAAGTGGCTAAAGCAGCTAATCCTCAACCTGCGAT 723 Query 900 TGTTTGGGCTTCCTCTAGCTCTGTTTACGGTCTCAACACTGAGAATCCATTCTCTGAAGA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 724 TGTTTGGGCTTCCTCTAGCTCTGTTTACGGTCTCAACACTGAGAATCCATTCTCTGAAGA 783 Query 960 ACACCGAACAGACCAACCAGCGAGTCTTTACGCAGCAACCAAGAAAGCTGGTGAAGAGAT 1019 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 784 ACACAGAACAGACCAACCAGCAAGTCTTTACGCAGCAACCAAGAAAGCTGGTGAAGAGAT 843 Query 1020 CGCACATACTTACAACCACATCTACGGTCTCTCCTTAACCGGACTCCGGTTCTTT-ACGG 1078 ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| Sbjct 844 CGCACATACTTACAACCACATCTACGGTCTCTCTTTAACCGGACTCCGGTT-TTTCACGG 902 Query 1079 TTTACGGTCCATGGGGAAGACCAGACATGGCTTACTTCTTCTTCACTAAAGACATCCTCC 1138 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 TTTACGGTCCTTGGGGAAGACCAGACATGGCTTACTTCTTCTTCACTAAAGACATCCTCC 962 Query 1139 ACGGTAAATCAATCGACATTTACAGAACTCAGGACAATCAAGAAGTGGCGCGTGACTTCA 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 ACGGTAAATCAATCGACATTTACAGAACTCAGGACAATCAAGAAGTGGCGCGTGACTTCA 1022 Query 1199 CCTACATCGATGACATCGTTAAAGGTTGTGTCGGTGCGTTAGACACGGCTGAGAAAAGCA 1258 | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1023 CATACATCGACGACATCGTTAAAGGTTGTGTCGGTGCGTTAGACACGGCGGAGAAAAGTA 1082 Query 1259 CCGGAAGCGGCGGAAAGAAGCGAGGACAAGCTCAGCTACGTGTTTACAATCTAGGAAACA 1318 |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1083 CCGGAAGCGGTGGAAAGAAGCGAGGACAAGCTCAACTACGTGTTTACAATCTTGGAAACA 1142 Query 1319 CGTCCCCGGTTCCGGTTGGGAGATTGGTCTCGATCTTGGAAGGATTGTTAGGGACAAAAG 1378 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1143 CGTCTCCGGTTCCGGTTGGGAGATTGGTCTCGATCTTGGAAGGATTGTTAGGGACAAAAG 1202 Query 1379 CTAAGAAGCATCTTATCAAAATGCCAAGAAACGGTGACGTGCCTTACACGCATGCTAATG 1438 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1203 CAAAGAAACATCTTATCAAAATGCCAAGAAACGGTGACGTGCCTTACACGCATGCTAATG 1262 Query 1439 TGAGTTTAGCGTATAAAGATTTCGGGTACAAACCGACGACGGATCTCGCGGCGGGGCTGA 1498 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1263 TGAGTTTAGCGTATAAAGATTTCGGATACAAACCCACGACGGATCTCGCGGCGGGGCTGA 1322 Query 1499 GGAAGTTCGTCAAGTGGTACGTTGGTTATTATGGGATTCAGCCGAGGGTAAAAAAGGAAA 1558 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1323 GGAAGTTCGTCAAGTGGTACGTTGGTTATTATGGGATACAGCCGAGGGTAAAAAAGGAAA 1382 Query 1559 -CTTCTCACGCCGAAGATTCCGCTTAATAATTTTCT 1593 ||| ||||||||||| ||||||||||||||||||| Sbjct 1383 ACTT-TCACGCCGAAGGTTCCGCTTAATAATTTTCT 1417 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75913858285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5