BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23980.1
Length=2842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930502 jgi|Araly1|930502|scaffold_302959.1 3238 0.0
Ahg897887 jgi|Araly1|897887|Al_scaffold_0005_1853 143 8e-33
> Ahg930502 jgi|Araly1|930502|scaffold_302959.1
Length=2228
Score = 3238 bits (1753), Expect = 0.0
Identities = 2071/2217 (93%), Gaps = 52/2217 (2%)
Strand=Plus/Plus
Query 308 TTTCAATGGCATCAGCTACTAGTTCCCGGAGGCAAGAGGACGTTGAAGCTGGACGCCGTA 367
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 17 TTTCAATGGCATCAGCCACTAGTTCCCGGAGGCAAGAGGACGCTGAAGCTGGACGCCGTA 76
Query 368 AGCTTGAGCAGTTTCGTAAACGAAAAGCAGCAGAAAAAGCTAAAAAGGCATCACAGA--A 425
||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |
Sbjct 77 AGCTTGAGCAGTTTCGTAAACAAAAAGCAGCAGAACGAGCTAAGAAGGCATCACAGAGTA 136
Query 426 -T---ACACAACC---TGTTGATAATAGCCAACAAAGTGTCATAGATTCAGATGGAGCTG 478
| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 137 GTACCACACAACCTGTTGTTGATAATAGCCAACAAAGTGTCACAGATTCAGATGGAGTTG 196
Query 479 GTGCATCTATCTCTAATGGACCTCTCAAGCAATCTGCTGAATCTACCTCAAATGAAACCC 538
||||||||| ||||||||||||||||| |||||||||||| || |||| ||||||||||
Sbjct 197 TTGCATCTATGTCTAATGGACCTCTCAATCAATCTGCTGAAACTTCCTCTAATGAAACCC 256
Query 539 ATACC-AA--------------AGATGTATATAATTTATCATTTTCGAATACAGCAATGG 583
||||| || |||||||||||||||||| |||||||||| |||| ||
Sbjct 257 ATACCAAATCCTCGTTTTCTGGAGATGTATATAATTTATCGTTTTCGAATATAGCACCGG 316
Query 584 ATGATGGAAGCAAAGAAAGAAGTAGACAAGATGATGGTCAGGAATCAGTGGGCAAAGTTG 643
||||||| |||||||||||||||| ||||||| |||| ||||||||||| ||||||||||
Sbjct 317 ATGATGGGAGCAAAGAAAGAAGTAAACAAGATTATGGGCAGGAATCAGTTGGCAAAGTTG 376
Query 644 ATTTTTCTAATAGCTTAGAGTTGATAGGTTCATCGAAGGACTTAACAGTGAATACTAGGC 703
|||||||||||||||||||| | |||||||| | |||||||||||||| |||||||||||
Sbjct 377 ATTTTTCTAATAGCTTAGAGGTCATAGGTTCCTTGAAGGACTTAACAGGGAATACTAGGC 436
Query 704 CTGAAGTTGTACCTTATAGCAATATAGACAAGCAATCGAGTGAAAGTTTTGATCGTGCTT 763
||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 437 GTGAAGATGTACCTTATAGCAATATAGACAAGCAATCGAGTGAAAGTTTTGGTCTTGCTT 496
Query 764 CTACTCTAAGAG-AA---A---------C--TG---CATCTCTTTTTTCTGGAACCTCAA 805
|||||||||||| || | | | |||||| |||||||||||||||||
Sbjct 497 CTACTCTAAGAGAAAGTGATGGTGTTCCCAAAGACACATCTCCTTTTTCTGGAACCTCAA 556
Query 806 TGCAAATGGATGGTTTCATTCACGGCAGTGGATTAACCTCATCCAGAAAAGACTCTCTAC 865
|||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 557 TGCAAATGGACGGCTTCATTCACGGCAGTGGATTAATCTCATCTAGAAAAGACTCTCTAC 616
Query 866 AACCTACTACCAGGATGGCAGGGTCTTTTGACGAAGTTGCCAAAAACCAACAGGGAAGTG 925
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 617 AACCTACTACCAGGATGGCAGGGACTTTTCACGAAGTTGCCGAAAACCAACAGGGAAGTG 676
Query 926 GTGAACTAGGA---GGTAGCATTGTGCAGAAGCCAACTTTGTCAAGCAGTTATTTGTTTA 982
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 677 GTGAACTAGGAGGGGGTAGCATTGTGCAGAAGCCAACTTTGTCTAGCAGTTATTTGTTTA 736
Query 983 ATTCTCCAGACACATCATCTCGACCTTCTGAACCTTCAGATTTCAGTGTGAATATCACAA 1042
|||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||
Sbjct 737 GTTCTCCTGACACATCATCTCGACCTTCTGAATCTTCAGATTTCAGTGTAAATTTCACAA 796
Query 1043 GCTCTTCACCATTAAACTCAGCTAAGAGTGAAGCAACTGTGAAGAGATCTCGTCCGTCTT 1102
|||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 797 GCTCTTCACCGTTAAACTCAGCTAAAAGTGAAGCAATTGTGAAGAGATCTCGTCCGTCTT 856
Query 1103 TCCTTGATTCCCTCAATATATCAAGAGCTCCAGAGACTCAATATCAACACCCTGAGATAC 1162
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 857 TCCTTGATTCCCTTAATATTTCAAGAGCTCCAGAGACTCAATATCAACACCCTGAGATAA 916
Query 1163 AAGCGGATTTGGTTACATCCAGTGGTTCCCAACTATCTGGCAGTGATGGTTTTGGGCCAT 1222
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 917 AAGCGGATTTGGTTACATCCAGTGGTTCCCAACTAACTGGCAGTGATGGTTTTGGGCCAT 976
Query 1223 CTTATATATCAGGGAGAAGAGACAGTAATGGACCATCATCTTTGACAAGCGGAGCATCTG 1282
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 977 CTTATATATCAGGGAGAAGAGACAGTAATGGA-C--CATCTTTGACAAGCGGAGCATCTG 1033
Query 1283 ATTATCCTAATCCATTTGAAAAGTTTCGGAGTTCTTTATATCCTGCTGCCAATGGAGTAA 1342
||| |||||||||||||||||| || |||||| |||| ||||||||||||||||||||||
Sbjct 1034 ATTCTCCTAATCCATTTGAAAAATTCCGGAGTCCTTTGTATCCTGCTGCCAATGGAGTAA 1093
Query 1343 TGCCAGGTTTTACTGATTTCTCTATGCCAAAACAAAATGATGATTTTACTGCTCTGGAAC 1402
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1094 TGCCAGGTTTTACTGACTTCTCCATGCCAAAACAAAATGATGATTTCACTGCTCTGGAAC 1153
Query 1403 AGCATATTGAGGATTTAACACAAGAAAAGTTTTCACTGCAAAGGGATCTTGATGCTTCAC 1462
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1154 AGCATATTGAGGATTTAACACAAGAAAAGTTTTCATTGCAAAGGGATCTTGATGCTTCAC 1213
Query 1463 GTGCACTGGCAGAATCCTTAGCATCAGAGAATTCTTCAATGACAGACACTTATAACCAGC 1522
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1214 GTGCACTGGCAGAATCCTTAGCATCAGAAAATTCTTCGATGACAGACACTTATAACCAGC 1273
Query 1523 AGAGAGGTCTTGTCAACCAACTAAAAGATGACATGGAGAGGCTATATCAACAGATCCAAG 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 AGAGAGGTCTTGTCAACCAACTAAAAGATGACATGGAGAGGCTATATCAACAGATCCAAG 1333
Query 1583 CCCAAATGGGCGAACTTGAGTCTGTCAGGGTTGAGTATGCAAACGCGCAGCTAGAATGTA 1642
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1334 TCCAAATGGGCGAACTTGAGTCTGTCAGGATTGAGTATGCAAACGCGCAGCTAGAATGTA 1393
Query 1643 ATGCTGCTGATGAGCGTTCCCAAATACTGGCTTCTGAAGTCATCAGTTTGGAAGATAAGG 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 ATGCTGCTGATGAGCGTTCCCAAATACTGGCTTCTGAAGTCATCAGTTTGGAAGATAAGG 1453
Query 1703 CTCTCAGACTCAGATCTAATGAGTTAAAGCTGGAGAGGGAACTGGAGAAGGCACAAACAG 1762
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1454 CTCTCAGACTCAGATCTAATGAGTTAAAGCTGGAGAGGGAACTGGAGAATGCACAAGCAG 1513
Query 1763 AAATGTTATCTTACAAGAAAAAATTGCAGAGCTTAGAGAAAGATCGTCAAGATTTACAAT 1822
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1514 AAATGTTATCTTACAAGAAAAAATTACAGAGCCTAGAGAAAGATCGTCAAGATTTACAAT 1573
Query 1823 CTACTATTAAAGCTCTTCAGGAAGAGAAGAAGGTCCTACAAACTATGGTGCAGAAAGCTT 1882
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1574 CTACTATTAAAGCTCTTCAGGAAGAGAAGAAGGTCCTACAGACTATGGTGCAGAAAGCTT 1633
Query 1883 CATCTGGTGGAAAATCCACTGATCTGAGTAAAAACTCAACTAGCAGAAAGAACGTGTCAA 1942
| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 1634 CCTCTGGTGGAAAATCCACTGATCTGAGTAAAACCTCAACTAGCAGAAAAAACGCATCAA 1693
Query 1943 CCTCTACAGAAGGTCTTGCAATCTCAGATACTACGCCAGAGAGCTCCAACCAGGAAACAG 2002
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1694 CCTCTACAGAAGGTCTCGCAATCTCAGATACTACTCCAAAGAGCTCCAACCAGGAAACAG 1753
Query 2003 ATTCTACTACTCTGCTCGAAAGTGATTCATCTAATACAGCTATCATTCCTGAAACTAGAC 2062
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1754 ATTCTGCTACTCTGCTCGAAAGTGATTCATCTAATACAGCTATCATTCCTGAAACTGGAC 1813
Query 2063 AATTAACTCTTGAAGGCTTTTCATTGAGCGTCCCAGCTGATCAGATGAGAGTGATTCATA 2122
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1814 AATTAACTCTTGAAGGTTTTTCATTGAGTGTCCCAGCTGATCAGATGAGAGTGATTCATA 1873
Query 2123 ACATTAATACGCTGATTGCTGAGTTGGCAATTGAGAAGGAAGAACTGGTGCAAGCACTGT 2182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1874 ACATTAATACGCTGATTGCTGAGTTGGCAATTGAGAAGGAAGAACTGGTGCAAGCACTGT 1933
Query 2183 CATCTGAGTTATCTCGAAGTGCGCATGTGCAGGAGCTGAACAAAGAGTTATCCAGAAAAC 2242
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1934 CATCTGAGTTATCTCGAAGTGCGCAGGTGCAGGAGCTGAACAAAGAATTATCCAGAAAAC 1993
Query 2243 TTGAAGCGCAGACGCAAAGGTTAGAGCTTGTAACAGCGCAGAAGATGGCCATAGACAATG 2302
||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1994 TTGAAGCACAGACAAAAAGGTTAGAGCTTGTAACAGCACAGAAGATGGCCATAGACAATG 2053
Query 2303 TTTCACCAGAAAAGCAGCAGCCGGACACTCATGTTGTTCAAGAGAGAACACCGATTGCAG 2362
||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2054 TTTCACCTGAAAAGCAGCAGCTGGATTCTCATGTTGTTCAAGAGAGAACACCGATTGCAG 2113
Query 2363 ATGAAGGCGATGAGGTGGTAGAAAGGGTTCTAGGATGGATCATGAAGATGTTCCCAGGAG 2422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2114 ATGAAGGCGATGAGGTGGTAGAAAGGGTTCTAGGATGGATCATGAAGATGTTCCCAGGAG 2173
Query 2423 GACCGTCGAAAAGAAGGACAAGCAAGCTTCTCTAATGCATGGATGGCTTGCTCAGTC 2479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2174 GACCGTCGAAAAGAAGGACAAGCAAGCTTCTCTAATGCATGG----CTTGCTCAGTC 2226
> Ahg897887 jgi|Araly1|897887|Al_scaffold_0005_1853
Length=306
Score = 143 bits (77), Expect = 8e-33
Identities = 90/96 (94%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 1590 GGGCGAACTTGAGTCTGTCAGGGTTGAGTATGCAAACGCGCAGCTAGAATGTAATGCTGC 1649
||| || ||||| ||||||||| |||| |||||||||||||||||||||| |||||||||
Sbjct 95 GGG-GAGCTTGAATCTGTCAGGATTGAATATGCAAACGCGCAGCTAGAATATAATGCTGC 37
Query 1650 TGATGAGCGTTCCCAAATACTGGCTTCTGAAGTCAT 1685
||||||||||||||||||||||||||||||||||||
Sbjct 36 TGATGAGCGTTCCCAAATACTGGCTTCTGAAGTCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107262129920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5