BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24080.1
Length=2164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479925 jgi|Araly1|479925|fgenesh2_kg.3__2626__AT3G24080.1 2377 0.0
Ahg916256 jgi|Araly1|916256|Al_scaffold_0008_1007 1535 0.0
Ahg494860 jgi|Araly1|494860|fgenesh2_kg.8__676__AT3G24080.2 1090 0.0
> Ahg479925 jgi|Araly1|479925|fgenesh2_kg.3__2626__AT3G24080.1
Length=2001
Score = 2377 bits (1287), Expect = 0.0
Identities = 1731/1936 (89%), Gaps = 67/1936 (3%)
Strand=Plus/Plus
Query 17 CATGATGGGGCGGCCGAAAGCGATACCAGATGATGACGACGGCGA--A-CTTTCACAGTT 73
|||||||||||||| ||||||||||||||||| |||||||||||| | ||| |||||||
Sbjct 1 CATGATGGGGCGGCTGAAAGCGATACCAGATGCTGACGACGGCGACGAGCTTCCACAGTT 60
Query 74 CAAAGGTTTCGATG-TCGAT-AACGATTTCGCT-AAGAGATTGTTGCACAACAAGGAA-C 129
|| ||| ||||| | ||||| | || | | | ||||||||| ||||||||| ||| |
Sbjct 61 CACAGGCTTCGA-GCTCGATGGA-GAATAC-ATGAAGAGATTGGAGCACAACAA-GAACC 116
Query 130 GCGAGGATCTTCAGCGATACGAAGAGAAGAATAAGCA-AGGTCTCTTCAG-CGAGTCCGA 187
|||||| ||| |||||| | || ||| ||| ||| | ||||||| || | ||| |||||
Sbjct 117 GCGAGGCTCTCCAGCGACATGAGGAGCGGAAGAAG-AGAGGTCTCATC-GACGATTCCGA 174
Query 188 GGAAGAGCCTGAGACGGAGTCTGAGCCGGATTCTGATCTTGGAAATCCAGAAAGCAATCT 247
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 175 GGAAGATTCTGAGCCGGAGTCTGAGCCGGATTCTGATCTTGGAAATCCAGAAAGCGATCT 234
Query 248 CAAATTCGTTGATTTGTTGATTAAGGTAAAGAAAAAGGATCCTATTATTAAGGACAAAGA 307
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 235 CAAATTCGTTGATTTGTTGCTTAAGGTAAAGAAAAAGGATCCTATTATTAAGAACAAAGA 294
Query 308 TGCTAAGTTCTATGAGTatgatgatgagagtagt---gaagaagatgaggttgataagaa 364
||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||
Sbjct 295 TGCTAAGTTCTTTGAGTCTGATGATGAGAGTAGTGAAGAAGAAGATGGGGTTGATAAGAA 354
Query 365 ggatacgaaaaagaagaagaagaagaagaagaTGTATTTGAAAGATGTTCAGGCACAGCA 424
|||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 355 GGAT------AAGAAAAAGAAGACGAAGAAGATGTATTTGAAAGATGTTCAAGCACAGCA 408
Query 425 TTTGCTTGAGGGAGGTCCTGAGTTTGTTGAGGAAGATGAGGAGAGGAAAGTTAGGACTTA 484
||||||||||| ||||||||||| |||||||||||||||| | ||||| |||||||||||
Sbjct 409 TTTGCTTGAGGAAGGTCCTGAGTATGTTGAGGAAGATGAGAATAGGAAGGTTAGGACTTA 468
Query 485 CGCTGAGGAGCAGAAAGAAACGAGGAAAGCTGTGACTGATGC-TTGGAAAGCTGAAGGGA 543
||||||| ||||| ||| | ||||| |||||| || ||||| |||| |||||| |||||
Sbjct 469 CGCTGAGCAGCAGGGAGAGATGAGGAGAGCTGTTACGGATGCTTTGG-AAGCTGGAGGGA 527
Query 544 ACGAGAGTGGTGAAGATGATGATTTTTTGAGAGTTGTGGAGAAGGAAGGAGATGATGATG 603
| ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 528 ATGAGAGTGATGGAGATGATGATTTTTTGAGAGTTGTGGAGAAGGAAGGAGAAGATGATG 587
Query 604 TGGAGGTTGATGAGGAGTTAGCTAAGAAAATGGATGAGTATTATGGTGATGAAGCTGAGG 663
||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 588 TGGAGGTTGATGAGGAGTTAGCTAAGAAAATTGATGAGTATTTTGGTGAAGAAGCTGAGG 647
Query 664 CTACTGAGAATCAGTTTTTGAAAGATTACTTGGTGAAACAGTTGTGGAAGGAGAAAGAGG 723
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 648 TTGTTGAGAATCAGTTTTTGAAAGATTATTTGGTGAAACAGTTGTGGAAGGAGAAAGAGG 707
Query 724 AGAGGGTTCCAGGTGAAGAAGAGTTGAAGGAGTTGAGTGAGGATGATCACGAGGTTTGGG 783
||| || || | ||| |||||||| |||||||||||| ||||| || | |||||||
Sbjct 708 AGAATATTGTAGATAAAGCAGAGTTGAGGGAGTTGAGTGATGATGAGCATGCTGTTTGGG 767
Query 784 ATCAGGAGGATTTTGAGGCAGGAAGACCGTTGGATTTATTAAACTATAGGCATGAAGATG 843
|||||||||||||||||||||||||||||||||| | | ||||||||||| | | |
Sbjct 768 ATCAGGAGGATTTTGAGGCAGGAAGACCGTTGGA--GA-GCAGCTATAGGCATG-A-A-G 821
Query 844 AGAATGCTGGGGACACTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGAGGAAGA 903
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AGAATGCTGGAGACATTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGAGGAAGA 881
Query 904 AGGATAATGCGAGGAAGGCGCAGAGGAAGAATAAAGACGAGAGGATGAAGAAGGAGGATG 963
|||||||||||||||||||||||||||||| |||||| |||||||||||| || || |
Sbjct 882 AGGATAATGCGAGGAAGGCGCAGAGGAAGAGTAAAGAGGAGAGGATGAAGTTGGCTGA-G 940
Query 964 ATGT-GAggaaagaggagttgaagcggttgaagaatgttaagaagaaggagattaaggag 1022
||| ||||||||| || ||||||| ||||||||||||||||||||||||||| |||||
Sbjct 941 ATGGAGAGGAAAGAAGATTTGAAGCAGTTGAAGAATGTTAAGAAGAAGGAGATGAAGGAA 1000
Query 1023 aagatgaagaaggTGCTTTCTGTTGCTGGTTTTAAGGATGGAGAAGAGTGTCCGTTAGAT 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AAGATGAAGAAGGTGCTTTCTGTTGCTGGTTTTAAGGATGGAGAAGAGTGTCCGTTAGAT 1060
Query 1083 GCCAAAGATTTTGATGATGAGTTTGATCCTGAGGAGTATGATAAGATGATGAAAGCTGCG 1142
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1061 GCGAAAGATTTTGATGATGAGTTTGATCCGGAGGAGTATGATAAGATGATGAAAGCTGCG 1120
Query 1143 TTTGATGATAAGTACTATGGTGAGGAGGATTCGGATTTGAATAGTGATGAGGATGATGAT 1202
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1121 TTTGATGATAAGTATTATGGTGCGGAGGATTCGGATTTGAATAGTGATGAGGATGATGAT 1180
Query 1203 GGAGAGAAACCAGATTTTGACAAGGAAGATGAATTGCTTGGACTTCCTAAAGATTGGGAT 1262
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1181 GGAGAGAAACCAGATTTTGACAAAGAAGATGAATTGCTTGGACTTCCCAAAGATTGGGAT 1240
Query 1263 GTGACTAAAGGTGGGGATGTTTTTGCAGCCGCAAGAGAAAAGGTTTTGAAGCATAAGGAA 1322
|||||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||
Sbjct 1241 GTGACTAAAGGTGGGGATGTTTTTACAGCCGCTAGAGAAAAGGGTTTGAAGCACAAGGGG 1300
Query 1323 AACATGTTGGGT-ATTGATgaagaagaagaagaagatgaag-aggaagaggaagacgaag 1380
||| | |||||| || |||||||||||||| ||||| |||| || | || ||||| ||||
Sbjct 1301 AACGTTTTGGGTGAT-GATGAAGAAGAAGAGGAAGAAGAAGTAG-ATGATGAAGAAGAAG 1358
Query 1381 aagaagaggaagtagatgaggagaaggaggcagagggtaagaggaagagaaagCGAAAAA 1440
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 AGGAAGAAGAAGTAGATGAGGAGAAGGAGGCAGAGGGTAAGAGGAAGAGAAAGCGAAAAA 1418
Query 1441 CGTCTCTTGTACAAA-AGACGAAAGAAGCTTTGATGGAGGAGTACTACAAGCTAGATTAT 1499
|||| |||||||||| || | |||||||||||||||||||||||||||||| |||| |||
Sbjct 1419 CGTCACTTGTACAAAGAGCC-AAAGAAGCTTTGATGGAGGAGTACTACAAGTTAGACTAT 1477
Query 1500 GAGGATACAATTGGAGAATTGAGAACAAGGTTTAAGTATGCGAAAGTACAACCAAACAGA 1559
||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1478 GAGGATACAATTGGAGATTTGAAAACAAGGTTCAAGTATGCGAAAGTACAACCAAACAGA 1537
Query 1560 TTTGAACTGGATACAGGAGAGATACTTACCTTAGATGACGCAGAGCTGAACCAATATGTG 1619
|| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 1538 TTCGAACTGGATACAGGAGAGATACTCACCTTAGATGACACAGACCTGAACCAATATGTG 1597
Query 1620 CCATTGAAGAAAATGGCTCCTTATGTGGAAAAGGATTGGGAGGTGAATAGGCATAAGGTC 1679
|| |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1598 CCGTTGAAGAAGATGGCTCCTTATGTGGAAAAGGATTGGGAGGTGAATAAGCACAAGGTT 1657
Query 1680 AAGGAGCAGAAACGTAAGATCAGGGAGTTGTGGGAGGGTAAACACGATGAGAAGAAAAGC 1739
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1658 AAGGAGCAGAAACTTAAGATCAGGGAGTTGTGGGAGGGTAAACACAATGAGAAGAAAAAC 1717
Query 1740 AAGAAGAGGAAGAAGAATGATGTTGTTGAGACCAAACCAACACCGAAAgaggctgaggct 1799
|||||||||||||||| |||||||| |||||| |||||||||||||||| | ||
Sbjct 1718 AAGAAGAGGAAGAAGACTGATGTTGCTGAGACGAAACCAACACCGAAAG---C--AG--- 1769
Query 1800 gaggctgaggctgaggctgaggctgaggctgaggctgaggctgaggctAAACTATCGAGA 1859
| ||||| | |||| |||||||||||||||||| | || ||||| |||
Sbjct 1770 -A---TGAGG---A-----AGGC-GAGGCTGAGGCTGAGGCT-A----AA-CTATCAAGA 1810
Query 1860 AAGGCCAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTCCTAGCAGAATGGCTGCG 1919
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1811 AAGGCGAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTGCTAGCAGAATGGCTGCT 1870
Query 1920 TATGGGAAAGCATAAT 1935
|||||||| |||||||
Sbjct 1871 TATGGGAAGGCATAAT 1886
> Ahg916256 jgi|Araly1|916256|Al_scaffold_0008_1007
Length=1851
Score = 1535 bits (831), Expect = 0.0
Identities = 1467/1751 (84%), Gaps = 135/1751 (8%)
Strand=Plus/Plus
Query 207 TCTGAGCCGGATTCTGATCTT-GGAAATCCAGAAAGCAATCTCAAATTCGTTGAT-TTGT 264
|||||||| ||| |||| || ||| ||||| ||| | || |||||||| | ||| || |
Sbjct 202 TCTGAGCCAGATGATGAT-TTAGGAGATCCAAAAAACGATGTCAAATTCATCGATGTT-T 259
Query 265 TGATTAAGGTAAAGAAAAAGGATCCTATT-ATTAAGGACAAAGATGCTAAGTTCTATGAG 323
|| ||||||||||||||||||||||| || |||||| ||||||||| ||| |||||||||
Sbjct 260 TGCTTAAGGTAAAGAAAAAGGATCCT-TTGATTAAGAACAAAGATGTTAACTTCTATGAG 318
Query 324 Tatgatgatgagagtagtgaagaagatgaggttgataagaaggatacgaaaaagaagaag 383
| | |||||| || | || || | | | | || ||||||| | ||| |||||||||
Sbjct 319 -A-G-TGATGA-AG-A-AGATGAGGCT-AAG--GAGAAGAAGG-T--GAAGAAGAAGAAG 366
Query 384 aagaagaagaagaTGTATTTGAAAGATGTTCAGGCACAGCATTTGCTTGAGGGAGGTCCT 443
||||||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||
Sbjct 367 AAGAAGAAGAAGATGTATTTGAAAGATGTTCAGGCACAGCAATTGATTGAAGAAGGTCCT 426
Query 444 GAGTTTGTTGAGGAAGATGAGGAGAGGA--AA-GTTAGGACTTACGCTGAGGA-GC-AGA 498
|||||||||||||||||||||||||||| || |||| || ||||||||| || || ||
Sbjct 427 GAGTTTGTTGAGGAAGATGAGGAGAGGAGGAAGGTTAAGAGTTACGCTGA-GAGGCAAG- 484
Query 499 AAGAAACGAGGAAAGCTGTGACTGATGC-TTGGAAAGCTGAAGGGAACGAGAGTGGTGAA 557
| ||| |||||||||||| |||||||| |||| || | | | ||||||| ||||
Sbjct 485 AGGAATTGAGGAAAGCTGTAACTGATGCTTTGG-AA---G-A--G---GAGAGTGATGAA 534
Query 558 GA---TGATGATTTTTTGAGAGTTGTGGAGAAGGAAGGAGATGATGATGTGGAGGTTGAT 614
|| ||| ||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 535 GATGGTGAAGATTTATTGAGAGTTGCGGAGAAGGAAGGAGATGATGATGTGGA----G-- 588
Query 615 GAGGAGTTAGCTAAGAAAATGGATGAGTATTAT-GGTGATGAAGC-TG-AG-GCTACTGA 670
|||||| ||||||||||||| |||||||||| | ||||| ||| | || || | | |||
Sbjct 589 GAGGAGCTAGCTAAGAAAATTGATGAGTATT-TCGGTGAAGAA-CGTGAAGTG-T-TTGA 644
Query 671 GAATCAGTTTTTGAAAGATTACTTGGTGAAACAGTTGTGGAAGGAGAAAGA-G-G-AGAG 727
||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 645 GAATCAGTTTTTGAAAGATTACTTGGTGAAACAGTTGTGGAAGGAGAAAGATGAGAAGAT 704
Query 728 GGTTCCAGGTGAAGAAGAGTTGAAGGAGTTGAGTGAGGATGATCACGAGGTTTGGGATCA 787
|| || ||||||||| ||||||||| | | |||||| | || | | |
Sbjct 705 TGTAATAGATGAAGAAGATTTGAAGGAG-T---T--GGATGA--A-GA----T--G---A 746
Query 788 GGAGGATTTTGAGGCAGGAAGACCGTTGGATTTATTA-A--A-CTATAGGCATGAAGATG 843
||| | | |||| | || |||| ||| |||| | | | |||||| |||| | | |
Sbjct 747 GGAAGCTGTTGA-GAAGCAAGA-----GGA-TTATGAGACTACCTATAGACATG-A-A-G 796
Query 844 AGAATGCTGGGGACACTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGAGGAAGA 903
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGAATGCTGGGGAGATTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGAGGAAGA 856
Query 904 AGGATAATGCGAGGAAGGCGCAGAGGAAGAATAAAGACGAGAGGATGAAGAAGGAGGATG 963
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| || |
Sbjct 857 AGGATAATGCGAGGAAGGCGCAGAGGAAGAGTAAAGAGGAGAGGATGAAGATGGATGA-G 915
Query 964 AT-GTGAggaaagaggagttgaagcggttgaagaatgttaagaagaaggagattaaggag 1022
|| | |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 916 ATTGAGAGGCAAGTGGAGTTGAAGCGGTTGAAGAATGTTAAGAAGAAGGAGATGAAGGAG 975
Query 1023 aagatgaagaaggTGCTTTCTGTTGCTGGTTTTAAGGATGGAGAAGAGTGTCCGTTAGAT 1082
| ||||||||| ||||||||| ||||||||||||||||||| ||||| ||||| || |||
Sbjct 976 AGGATGAAGAAAGTGCTTTCTATTGCTGGTTTTAAGGATGGTGAAGAATGTCCTTTGGAT 1035
Query 1083 GCCAAAGATTTTGATGATGAGTTTGATCCTGAGGAGTATGATAAGATGATGAAAGCTGCG 1142
|| ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1036 GCGAAAGACTTGGATGATGAGTTTGATCCTGAGGAGTATGATATGATGATGAAAGCTGCG 1095
Query 1143 TTTGATGATAAGTACTATGGTGAGGAGGATTCGGATTTGAATAGTGATGAGGATGATGAT 1202
||||||||| | |||||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 1096 TTTGATGATGATTACTATGGTGCGGAGGATTCAGATTTGAATAGTGATGAGGATGATGGT 1155
Query 1203 GGAGAGAAACCAGATTTTGACAAGGAAGATGAATTGCTTGGACTTCCTAAAGATTGGGAT 1262
| ||| || ||||| ||||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 1156 G-AGA-AA-CCAGACTTTGACAAGGAGGATGAATTGCTTGGACTTCCCAAAGATTGGGGT 1212
Query 1263 GTGACTAAAGGTGGGGATGTTTTTGCAGCCGCAAGAGAAAAGGTTTTGAAGCATAAGGAA 1322
|||| | |||||||||||| |||| | | || |||||||||||||||||||||| |||
Sbjct 1213 GTGATTCAAGGTGGGGATGGTTTTATATCTGCTAGAGAAAAGGTTTTGAAGCATATGGAG 1272
Query 1323 AACATGTTGGGTATTGATgaagaagaagaagaagatgaagaggaagaggaag-acgaaga 1381
|| || || | ||||||||||||||||||||| ||||| ||||| |||| | |||||
Sbjct 1273 AA--TGGTGC-TGGTGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTA-GAAGA 1328
Query 1382 agaagaggaagtagatgaggagaaggaggcagagggtaagaggaagagaaagCGAAAAAC 1441
|||||| ||||| |||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 1329 AGAAGAAGAAGTCGATGAGGAGAAGGAAGTGGAGGGTAAGAGGAAGAGAAAGCGGAAAAC 1388
Query 1442 GTCTCTTGTACAAA-AGACGAAAGAAGCTTTGATGGAGGAGTACTACAAGCTAGATTATG 1500
||||||||||||| || | || |||||| || |||||||||||||||||||||| ||||
Sbjct 1389 ATCTCTTGTACAAAGAGCC-AAGGAAGCTATGTTGGAGGAGTACTACAAGCTAGACTATG 1447
Query 1501 AGGATACAATTGGAGAATTGAGAACAAGGTTTAAGTATGCGAAAGTACAACCAAACAGAT 1560
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1448 AGGATACAATTGGAGATTTGAAAACAAGGTTTAAGTATGCGAAAGTACAACCAAACAAAT 1507
Query 1561 TTGAACTGGATACAGGAGAGATACT-TACCTTAGATGACGCAGAGCTGAACCAATATGTG 1619
| | |||||||||||||||||||| | | ||||||||| ||||||||||||| || ||
Sbjct 1508 TCGCCCTGGATACAGGAGAGATACTCTTC-TTAGATGACACAGAGCTGAACCAGTACGTA 1566
Query 1620 CCATTGAAGAAAATGGCTCCTTATGTGGAAAAGGATTGGGAGGTGAATAGGCATAAGGTC 1679
||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1567 CCATTGAAGAAGATGGCTCCTTATGTGGAAAAGGATTGGGAGGTGAATAGACACAAGGTC 1626
Query 1680 AAGGAGCAGAAACGTAAGATC-AGGGAGTTGTGGGAGGGTAAACACGATGAGAAGAAAAG 1738
||||||||||||| ||||||| ||| |||||| | ||||| ||| | |||| ||||||||
Sbjct 1627 AAGGAGCAGAAACTTAAGATCCAGG-AGTTGTTGCAGGGTGAACGCCATGAAAAGAAAAG 1685
Query 1739 CAAGAAGAGGAAGAAGAATGATGTTGTTGAGACCAAACCAACACCGAAAgaggctgaggc 1798
|||||||||||||||||| |||||||||||| |||| || ||| || | | ||
Sbjct 1686 CAAGAAGAGGAAGAAGAACGATGTTGTTGAGG--AAACGAA-ACC-AAC-A--CAGAA-- 1736
Query 1799 tgaggctgaggctgaggctgaggctgaggctgaggctgaggctgaggctAAACTATCGAG 1858
|| | || ||||| |||| || |||||| | || || ||| | |||
Sbjct 1737 --AG-CAGA---TGAGGA--AGGC-GAAGCTGAGAC-GA-----AG-CTA---T--CGAA 1775
Query 1859 AAAGGCCAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTCCTAGCAGAATGGCTGC 1918
|||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1776 AAAGGCAAAGAGAAGAAGGCGTCGAGCAGAGAAGAAGCTTCCTCCTAATAGAATGGCTGC 1835
Query 1919 GTATGGGAAAG 1929
||||| ||||
Sbjct 1836 TTATGG-AAAG 1845
> Ahg494860 jgi|Araly1|494860|fgenesh2_kg.8__676__AT3G24080.2
Length=2053
Score = 1090 bits (590), Expect = 0.0
Identities = 818/924 (89%), Gaps = 32/924 (3%)
Strand=Plus/Plus
Query 14 TAGCATGATGGGGCGGCCGAAAGCGATACCAGATGATGACGACGGCGA--AC-TTTCACA 70
|||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1 TAGCATAATGGGGCGGCCGAAAGCGATACCAGATGATGACGACGGCGACGACCTTTCACA 60
Query 71 GTTCAAAGGTTTCGATG-TCGAT-AACGATTTCGCT-AAGAGATTGTTGCACAACAAGGA 127
||||| ||| ||||| | ||||| || || | | ||||||||| |||||||||| |
Sbjct 61 GTTCACAGGCTTCGA-GCTCGATGAAAAATA-CA-TGAAGAGATTGGAGCACAACAAG-A 116
Query 128 AC-GCGAGGATCTTCAGCGATACGAAGAGAAGAATAAGCAAGGTCTCTTC-AGCGAGTCC 185
|| |||||| ||| |||||| |||| ||| |||| ||| |||||||| || | ||| |||
Sbjct 117 ACCGCGAGGCTCTCCAGCGACACGAGGAGCAGAAGAAGAAAGGTCTCATCGA-CGA-TCC 174
Query 186 -GAGGAAGAGCCTGAGACGGAGTCTGAGCCGGATTCTGATCTTGGAAATCCAGAAAGCAA 244
|||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 175 CGAGGAAGATTCTGAGCCTGAGTCTGAGCCGGATTCTGATCTCGGAAATCCAGAAAGCGA 234
Query 245 TCTCAAATTCGTTGATTTGTTGATTAAGGTAAAGAAAAAGGATCCTATTATTAAGGACAA 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 235 TCTCAAATTCGTTGATTTGTTGCTTAAGGTAAAGAAAAAGGATCCTATTATTAAGAACAA 294
Query 305 AGATGCTAAGTTCTATGAGTatgatgatgagagtagtgaagaagatgaggttgataagaa 364
|||||||||||||| ||||| |||||| ||| |||||||||||||||||||||| ||||
Sbjct 295 AGATGCTAAGTTCTTTGAGTCTGATGA-GAG--TAGTGAAGAAGATGAGGTTGATGAGAA 351
Query 365 ggatacgaa-aa-a-gaagaagaagaagaagaaga--T-GTATTTGAAAGATGTTCAGGC 418
||||| ||| || | |||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 352 GGATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTGTATTTGAAAGATGTTCAAGC 411
Query 419 ACAGCATTTGCTTGAGGGAGGTCCTGAGTTTGTTGAGGAAGATGAGGAGAGGAAAGTTAG 478
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 412 ACATCATTTGCTTGAGGAAGGTCCTGAGTTTGTTGAGGAAGATGAGGAGAGGAAGGTTAG 471
Query 479 GACTTACGCTGAGGAGCAGAAAGAAACGAGGAAAGCTGTGACTGATGCTT-GGAAAGCTG 537
||||||||||||| ||||| || ||||| |||||| || ||||||| |||| ||||
Sbjct 472 GACTTACGCTGAGCAGCAGGGCGAGTTGAGGAGAGCTGTTACGGATGCTTTGGAA-GCTG 530
Query 538 AAGGGAACGAGAGTGGTGAAGATGATGATTTTTTGAGAGTTGTGGAGAAGGAAGGAGATG 597
|||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GAGGGAATGAGAGTGATGGAGATGATGATTTTTTGAGAGTTGTGGAGAAGGAAGGAGATG 590
Query 598 ATGATGTGGAGGTTGATGAGGAGTTAGCTAAGAAAATGGATGAGTATTATGGTGATGAAG 657
||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| ||||
Sbjct 591 ATGATGTGGAGGTTGATCAGGAGTTAGCTAAGAAAATTGATGAGTATTTTGGTGAAGAAG 650
Query 658 CTGAGGCTACTGAGAATCAGTTTTTGAAAGATTACTTGGTGAAACAGTTGTGGAAGGAGA 717
|||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 651 CTGAGGTTGTTGAGAATCAGTTTTTGAAAGATTATTTGGTGAAACAATTGTGGAAGGAGA 710
Query 718 AAGAGGAGAGGGTTCCAGGTGAAGAAGAGTTGAAGGAGTTGAGTGAGGATGATCACGAGG 777
||||||||| | || || | ||| ||||||||||||||||||||||||||| || | |
Sbjct 711 AAGAGGAGAAGATTATAGATAAAGCAGAGTTGAAGGAGTTGAGTGAGGATGAGCAAGCTG 770
Query 778 TTTGGGATCAGGAGGATTTTGAGGCAGGAAGACCGTTGGATTTATTAAACTATAGGCATG 837
|||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 771 TTTGGGATCAGGAGGATTTTGAGGCAGGAAGACCGTTGGAG--AG-AAGCTATAGGCATG 827
Query 838 AAGATGAGAATGCTGGGGACACTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGA 897
|||| || | |||||| |||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 828 AAGA-GA-A-TGCTGGAGACATTGTTATGGGTCAGTCTAGGGTTGTGAAAGGGTCGGTGA 884
Query 898 GGAAGAAGGATAATGCGAGGAAGG 921
||||||||||||| ||||||||||
Sbjct 885 GGAAGAAGGATAACGCGAGGAAGG 908
Score = 843 bits (456), Expect = 0.0
Identities = 540/580 (93%), Gaps = 8/580 (1%)
Strand=Plus/Plus
Query 1365 gaagaggaagacgaagaagaagaggaagtagatgaggagaaggaggcagagggtaagagg 1424
||||| ||||| || ||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1364 GAAGAAGAAGAAGAGGAACAAGAAGAAGTAGATGAGGAGAATGAGGCAGAGGGTAAGAGG 1423
Query 1425 aagagaaagCGAAAAACGTCTCTTGTACAAAAGA-CGAAAGAAGCTTTGATGGAGGAGTA 1483
|||||||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||
Sbjct 1424 AAGAGAAAGCGAAAAACGTCACTTGTAC-AAAGAGCCAAAGAAGCTTTGATGGAGGAGTA 1482
Query 1484 CTACAAGCTAGATTATGAGGATACAATTGGAGAATTGAGAACAAGGTTTAAGTATGCGAA 1543
||||||| |||| |||||||||||||||||||| |||| ||||||||| |||||||||||
Sbjct 1483 CTACAAGTTAGACTATGAGGATACAATTGGAGATTTGAAAACAAGGTTCAAGTATGCGAA 1542
Query 1544 AGTACAACCAAACAGATTTGAACTGGATACAGGAGAGATACTTACCTTAGATGACGCAGA 1603
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1543 AGTACAACCAAACAGATTCGAACTGGATACAGGAGAGATACTCACCTTAGATGACGCAGA 1602
Query 1604 GCTGAACCAATATGTGCCATTGAAGAAAATGGCTCCTTATGTGGAAAAGGATTGGGAGGT 1663
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1603 CCTGAACCAATATGTGCCGTTGAAGAAGATGGCTCCTTATGTGGAAAAGGATTGGGAGGT 1662
Query 1664 GAATAGGCATAAGGTCAAGGAGCAGAAACGTAAGATCAGGGAGTTGTGGGAGGGTAAACA 1723
||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1663 GAATAAGCACAAGGTTAAGGAGCAGAAACTTAAGATCAGGGAGTTGTGGGAGGGTAAACA 1722
Query 1724 CGATGAGAAGAAAAGCAAGAAGAGGAAGAAGAATGATGTTGTTGAGACCAAACCAACACC 1783
| |||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 1723 CAATGAGAAGAAAAGCAAGAAGAGGAAGAAGACTGATGTTGCTGAGACGAAACCAACACC 1782
Query 1784 GAAAg-aggctgaggctgaggctgaggctgaggctgaggctgaggctgaggctgaggctg 1842
||||| | | ||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1783 GAAAGCA-GATGAGG--AAGGC-GAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTG 1838
Query 1843 aggctAAACTATCGAGAAAGGCCAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTC 1902
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1839 AGGCTAAACTATCGAGAAAGGCGAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTG 1898
Query 1903 CTAGCAGAATGGCTGCGTATGGGAAAGCATAATAATAAAA 1942
|||||||||||||||| |||||||| ||||||||| ||||
Sbjct 1899 CTAGCAGAATGGCTGCTTATGGGAAGGCATAATAA-AAAA 1937
Score = 597 bits (323), Expect = 1e-169
Identities = 386/416 (93%), Gaps = 5/416 (1%)
Strand=Plus/Plus
Query 949 TGAAGAAGGAGGATGATGTGAggaaagaggagttgaagcggttgaagaatgttaagaaga 1008
||| |||| ||||| | | |||| | ||||||||||||| |||||||||||||||||||
Sbjct 882 TGAGGAAGAAGGATAACGCGAGG--A-AGGAGTTGAAGCGATTGAAGAATGTTAAGAAGA 938
Query 1009 aggagattaaggagaagatgaagaaggTGCTTTCTGTTGCTGGTTTTAAGGATGGAGAAG 1068
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 939 AGGAGATGAAGGAGAAGATGAAGAAGGTGCTTTATGTTGCTGGTTTTAAGGATGGAGAAG 998
Query 1069 AGTGTCCGTTAGATGCCAAAGATTTTGATGATGAGTTTGATCCTGAGGAGTATGATAAGA 1128
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 999 AGTGTCCGTTAGATGCGAAAGATTTTGATGATGAGTTTGATCCGGAGGAGTATGATAAGA 1058
Query 1129 TGATGAAAGCTGCGTTTGATGATAAGTACTATGGTGAGGAGGATTCGGATTTGAATAGTG 1188
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1059 TGATGAAAGCTGCGTTTGATGATAAGTATTATGGTGCGGAGGATTCGGATTTGAATAGTG 1118
Query 1189 ATGAGGATGATGATGGAGAGAAACCAGATTTTGACAAGGAAGATGAATTGCTTGGACTTC 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 ATGAGGATGATGATGGAGAGAAACCAGATTTTGACAAGGAAGATGAATTGCTTGGACTTC 1178
Query 1249 CTAAAGATTGGGATGTGACTAAAGGTGGGGATGTTTTTGCAGCCGCAAGAGAAAAGGTTT 1308
| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 1179 CCAAAGATTGGGATGTGACTAAAGGTGGGGATGTTTTTACAGCCGCTAGAGAAAAGGGTT 1238
Query 1309 TGAAGCATAAGGAAAACATGTTGGGT-ATTGATgaagaagaagaagaagatgaaga 1363
||||||| |||| ||| | ||||| || |||| ||||||||| ||||| |||||
Sbjct 1239 TGAAGCACAAGGGGAACGTTTTGGGGGAT-GATGGAGAAGAAGAGGAAGAAGAAGA 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81436943810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5