BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24170.1 Length=2007 Score E Sequences producing significant alignments: (Bits) Value Ahg930465 jgi|Araly1|930465|scaffold_302922.1 2479 0.0 > Ahg930465 jgi|Araly1|930465|scaffold_302922.1 Length=1540 Score = 2479 bits (1342), Expect = 0.0 Identities = 1463/1523 (96%), Gaps = 1/1523 (0%) Strand=Plus/Plus Query 252 AATCATGGCGAGGAAGATGCTTGTTGATGGTGAGATTGATAAGGTGGCGGCTGATGAAGC 311 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 17 AATCATGGCGAGGAAGATGCTTGTTGATGGAGAGATTGATAAGGTGACGGCTGATGAAGC 76 Query 312 CAACGCGACGCACTATGATTTTGATTTGTTTGTCATCGGTGCCGGGAGTGGCGGTGTTCG 371 |||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 77 CAACGCCACGCACTATGATTTTGATTTGTTCGTCATCGGTGCCGGTAGTGGCGGTGTTCG 136 Query 372 TGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAGGTTGGTATTTGTGAGCTTCCATTTCA 431 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 137 TGCTGCTAGGTTTTCCGCTAATCACGGCGCTAAGGTTGGTATTTGTGAGCTTCCATTTCA 196 Query 432 CCCTATTAGCTCTGAGGAGATTGGAGGCGTTGGTGGAACCTGTGTTATCCGTGGTTGTGT 491 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 197 CCCTATTAGCTCCGAGGAGATTGGAGGAGTTGGTGGAACCTGTGTTATCCGTGGTTGTGT 256 Query 492 TCCTAAAAAGATTCTCGTCTATGGAGCTACTTACGGTGGTGAACTTGAGGATGCTAAAAA 551 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 257 TCCTAAAAAGATTCTAGTCTATGGGGCTACTTACGGTGGTGAACTTGAGGATGCTAAAAA 316 Query 552 TTATGGGTGGGAAATAAATGAGAAAGTCGACTTCACATGGAAGAAGCTTTTGCAAAAGAA 611 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 TTATGGATGGGAAATAAATGAGAAAGTCGACTTCACATGGAAGAAGCTTTTGCAAAAGAA 376 Query 612 GACTGATGAGATACTAAGACTGAATAATATCTACAAGCGGTTATTGGCAAATGCTGCGGT 671 |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 377 GACTGATGAGATTCTAAGACTGACTAATATCTACAAGCGGTTGTTGGCAAATGCTGCGGT 436 Query 672 GAAATTGTATGAAGGTGAAGGAAGAGTAGTTGGTCCCAACGAAGTGGAGGTGAGACAAAT 731 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 437 GAAATTGTATGAAGGTGAAGGAAGAGTAGTTGGTCCCAATGAAGTGGAGGTGAGACAAAT 496 Query 732 AGATGGCACAAAAATAAGTTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGC 791 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 497 AGATGGCACGAAAATAAGCTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGC 556 Query 792 GCAAAAGCCTAATATTCCTGGACATGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTT 851 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 557 ACAAAAGCCTAATATTCCTGGACATGAGCTGGCTATTACATCTGATGAAGCTTTAAGCTT 616 Query 852 GGAAGAATTTCCCAAGCGTGCTATAGTGCTTGGAGGAGGGTATATTGCTGTGGAGTTTGC 911 |||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 617 GGAAGAATTTCCTAAGCGTGCTGTAGTGCTTGGAGGAGGGTACATTGCTGTGGAGTTTGC 676 Query 912 ATCAATATGGCGTGGAATGGGTGCTACTGTAGATTTATTCTTCAGGAAGGAACTTCCGCT 971 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 677 ATCAATATGGCGTGGAATGGGTGCTACCGTAGATTTATTCTTCAGGAAGGAACTTCCACT 736 Query 972 AAGGGGTTTTGATGACGAAATGAGGGCACTAGTTGCTAGAAATCTTGAAGGAAGGGGCGT 1031 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 737 AAGGGGTTTTGATGACGAAATGAGGGCACTAGTTGCTAGAAATCTTGAAGGAAGGGGCGT 796 Query 1032 TAATCTGCATCCACAAACAAGTTTGACTCAGTTGACAAAAACAGACCAGGGGATCAAAGT 1091 ||| |||||||| |||||||||||||||||||||| |||||||||| | ||||||||||| Sbjct 797 TAACCTGCATCCGCAAACAAGTTTGACTCAGTTGATAAAAACAGACAACGGGATCAAAGT 856 Query 1092 CATATCGTCCCATGGGGAGGAATTCGTGGCAGATGTCGTCCTATTTGCTACTGGCAGAAG 1151 ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 857 CATATCGTCTCATGGGGAAGAATTCGTGGCAGATGTTGTCCTATTTGCTACTGGCAGAAA 916 Query 1152 TCCTAATACCAAAAGATTGAATTTAGAAGCTGTTGGTGTTGAACTTGATCAGGCTGGAGC 1211 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 917 TCCTAATACCAAGAGATTAAATTTAGAAGCTGTTGGTGTTGAACTTGATCAGGCTGGAGC 976 Query 1212 TGTGAAGGTTGACGAGTATTCACGAACTAATATACCTAGCATATGGGCTGTAGGAGATGC 1271 |||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct 977 TGTGAAGGTTGATGAGTACTCACGCACTAATATACCTAGCATATGGGCTGTGGGAGATGC 1036 Query 1272 CACAAACCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTGTTTTGCGAACAC 1331 ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| Sbjct 1037 TACAAACCGAATTAACCTTACACCTGTTGCATTAATGGAGGCCTCCTGCTTTGCGAACAC 1096 Query 1332 TGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTG 1391 || ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1097 TGTTTTTGGTGGAAAGCCTACTAAAGCAGACTACAGCAATGTCGCATGTGCTGTATTTTG 1156 Query 1392 CATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACAAGCAACCGG 1451 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1157 CATACCTCCACTAGCTGTGGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACAAGCAACCGG 1216 Query 1452 TGATATTCTGGTCTTCACCTCAGGCTTTAATCCAATGAAGAACACCATTTCTGGACGCCA 1511 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1217 GGATATTCTGGTTTTCACCTCAGGCTTTAATCCAATGAAAAACACCATTTCTGGACGGCA 1276 Query 1512 GGAAAAGACATTGATGAAGCTAATAGTTGATGAGAAGAGTGATAAGGTTATTGGAGCATC 1571 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1277 GGAAAAGACATTGATGAAGCTAATAGTTGATGAGAAGACTGATAAGGTTATTGGAGCATC 1336 Query 1572 CATGTGCGGTCCTGATGCAGCTGAGATCATGCAGGGGATTGCAATTGCGCTCAAGTGTGG 1631 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1337 CATGTGCGGTCCTGATGCAGCTGAGATCATGCAGGGGATTGCAATTGCACTCAAGTGTGG 1396 Query 1632 AGCAACCAAAGCACAATTTGATAGCACGGTTGGGATACATCCATCTTCTGCAGAGGAATT 1691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1397 AGCAACCAAAGCACAATTTGATAGCACGGTTGGGATACATCCATCTTCTGCAGAGGAATT 1456 Query 1692 TGTGACAATGCGCAGTGTGACCAGACGCATTGCCCACAAACCCAAACCTAAGACAAATCT 1751 |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 1457 TGTGACAATGCGCAGTGTGACCAGACGCATTGCCTGCAAACCCAAACCTAAGACGAATCT 1516 Query 1752 ATGAACCGCAAAA-TATAAAGAG 1773 ||||||||||||| | ||||||| Sbjct 1517 ATGAACCGCAAAAATCTAAAGAG 1539 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75456775345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5