BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24460.1 Length=1976 Score E Sequences producing significant alignments: (Bits) Value Ahg479955 jgi|Araly1|479955|fgenesh2_kg.3__2656__AT3G24460.1 2383 0.0 Ahg497050 jgi|Araly1|497050|fgenesh2_kg.9__15__AT4G13345.1 1055 0.0 > Ahg479955 jgi|Araly1|479955|fgenesh2_kg.3__2656__AT3G24460.1 Length=1584 Score = 2383 bits (1290), Expect = 0.0 Identities = 1440/1514 (95%), Gaps = 4/1514 (0%) Strand=Plus/Plus Query 281 TTCTTTCATCTAAGAAACTGATTTCTGATGCAAAATCCTCCCATGGAATGAGTGATCTGT 340 ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 TTCTTCCATATAAGAAACTGATTTCTGATGCAAAATTCTCCCATGGAATGAGTGATCTGT 60 Query 341 TTCTTGAATTTCTTGATCTTCTAATGACATGAAGAGGAGAGAGTCTTGGTAACTTTAAGG 400 ||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||| Sbjct 61 TTCTTGAATTTCTTGATCTTCTAATGATATGAAGAGGAGAGCGTC-TGGTAAGTTTAAGG 119 Query 401 AGTAATGGAGACCGGTACAAGCGTTAGCAACAACAACCAAAGCATCAGAAACGATAGCTA 460 | ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| Sbjct 120 ACTAATGGAGACCGGTACAAGTGTTAGCAACAACAGCGGAAGCATCAGAAACGATAGCTA 179 Query 461 TGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAACGGCTGCAATCCCTGGAT 520 |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 180 TGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAATGGTTGCAATCCATGGAT 239 Query 521 GGCTAGATATGTATACGGTCTGATATTCCTCATTGCGAATCTACTAGCTTGGGCTGCTCG 580 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 240 GGCTAGATATGTATACGGTCTGATATTTCTCATTGCGAATCTACTAGCTTGGGCTGCTCG 299 Query 581 TGATTATGGTCGGGGTGCCTTAAGAAAAGTGACAAGATTCAAGAACTGTAAAGGTGGCGA 640 |||||||||||||||||||||||||||||| |||| |||||||||||||||||| || || Sbjct 300 TGATTATGGTCGGGGTGCCTTAAGAAAAGTAACAAAATTCAAGAACTGTAAAGGCGGGGA 359 Query 641 AAACTGTTTGGGGACCGACGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTTGTTCTACTT 700 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAACTGTTTGGGGACCGAAGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTTGTTCTACTT 419 Query 701 TGTTATGTTTCTTTCAACACTTGGTACGTCGAAAACGCATTCATCAAGAGATAGATGGCA 760 |||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| Sbjct 420 TGTTATGTTTCTTTCAACACTTGGCACATCGAAAACACATTCATCAAGAGATAGATGGCA 479 Query 761 TTCTGGATGGTGGTTTGTTAAGCTCATCATGTGGCCTGCCTTAACCATCATTCCCTTCTT 820 ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| Sbjct 480 TTCTGGATGGTGGTTTGCTAAGCTCATCATGTGGCCTGCCTTAACCATTATCCCCTTCTT 539 Query 821 GCTTCCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTTGGTGCAGGGGTATT 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GCTTCCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTTGGTGCAGGGGTATT 599 Query 881 TC-TCTTAATACAGCTAATTAGTGTGATCAGTTTCATTCAATGGCTCAACGAATGCTATC 939 || || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 600 TCTTC-TAATACAGCTAATTAGTGTGATCAGTTTCATTCAATGGCTTAACGAATGCTATC 658 Query 940 AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTACTATCAACTACTTCAT 999 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 659 AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTACTAGCAACTACTTCAT 718 Query 1000 ACACAGTTTGCATAGTAGGAGTGATTTTGATGTACATTTGGTACGCGCCTGATTCTTCAT 1059 |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 719 ACACAGTTTGCATAATAGGAGTGATTTTGATGTACATTTGGTACGCGCCGGATTCGTCAT 778 Query 1060 GTCTTCTCAATATATTCTTTATAACATGGACTTTGTTCCTCATCCAACTCATGACAAGCA 1119 | ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct 779 GCCTTCTCAATATATTCTTCATAACATGGACTTTGTTCCTTATCCAACTTATGACAAGCA 838 Query 1120 TCGCTCTCCATCCTAAAGTTAATGCTGGATACTTGACTCCAGCTCTTATGGGACTCTATG 1179 | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 839 TAGCTCTCCATCCTAAGGTGAATGCTGGATACTTGACTCCAGCTCTTATGGGACTCTATG 898 Query 1180 TTGTGTTTATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGGCGAAAGTTGTAATAGAA 1239 ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 899 TTGTGTTCATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGGAGAAAGTTGCAATAGAA 958 Query 1240 AAGCAGCAGCTTCAAACAGAACAGACTGGCTTACCATCATTAGCTTTGTGGTTGCGCTAC 1299 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 959 AAGCAGCAGCTTCGAACAGAACGGACTGGCTTACCATCATTAGCTTTGTGGTTGCGCTAC 1018 Query 1300 TTGCGATGGTTATCGCGACATTTTCGACAGGAATAGACTCCCAATGTTTCCAATTTAAGA 1359 | || |||||||| || |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1019 TCGCAATGGTTATTGCCACATTTTCTACAGGAATAGACTCCCAATGTTTCCAATTCAAGA 1078 Query 1360 AAGATGAGAACGATCAAGAAGAAGAAGCTGAAGATGATGTTCCATATGGCTATGGATTCT 1419 ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| Sbjct 1079 AAGATGAGAACGATCAAGAAGAAGAAGAGGAAGATGGTGTTCCATATGGATATGGATTCT 1138 Query 1420 TTCATTTTGTGTTTGCCACAGGAGCAATGTACTTCGCTATGCTACTCATCGGTTGGAACA 1479 | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 TCCATTTTGTATTTGCAACAGGAGCAATGTACTTCGCTATGCTACTCATCGGTTGGAACA 1198 Query 1480 CTCATCATCCCATGAAAAAGTGGACGATTGACGTGGGATGGACAAGTACTTGGGTAAGGG 1539 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1199 CTCATCACCCCATGAAAAAGTGGACGATTGACGTGGGATGGACGAGTACTTGGGTAAGGG 1258 Query 1540 TTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATGTTGGTGGCTCCTCTCATAC 1599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATGTTGGTGGCTCCTCTCATAC 1318 Query 1600 TAAAGAGCAGAAGACAAACGCCAACTGGGACTTGATAGGTAAAGAGAGATTGGGAAACGA 1659 ||||||||||||||||||| ||| |||||| ||| |||||| |||| ||||||||||| Sbjct 1319 TAAAGAGCAGAAGACAAACAACAAGTGGGACATGAGAGGTAAGGAGATTTTGGGAAACGA 1378 Query 1660 CAAAGAACTTTGTCGTTTTGGATCTCTTTTCACCTTGGGATAGAACTAAACCACGTTTTT 1719 ||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| Sbjct 1379 CAAAGAACTTTGTCGTTTTGGATCTCTTTTCTCCATGGGATAGAACTAAACCACCTTTTT 1438 Query 1720 CACCTACGACCAAGATGGAAGTTGCGGTAGCAAAGCAAACATGCTCTCATGGGTTTGGTG 1779 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1439 CACCTACGACCAAGATGGAAGTTGCGGTGGCAAAGCAAACATGCTCTCATGGGTTTGGTG 1498 Query 1780 GGAAAATAGT-Att 1792 |||||||||| ||| Sbjct 1499 GGAAAATAGTTATT 1512 > Ahg497050 jgi|Araly1|497050|fgenesh2_kg.9__15__AT4G13345.1 Length=1749 Score = 1055 bits (571), Expect = 0.0 Identities = 965/1151 (84%), Gaps = 44/1151 (4%) Strand=Plus/Plus Query 457 GCTATGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAACGGCTGCAATCCCT 516 ||||||||| ||| ||||| || || ||||||| ||||| || || ||||||||||| | Sbjct 370 GCTATGAAGGAATAAAGAACGGTTCGTGGTTTAGCCAGTTTCGTAATGGCTGCAATCCAT 429 Query 517 GGATGGCTAGATATGTATACGGTCTGATATTCCTCATT-GCGAATCTACTAGCTTGGG-C 574 |||||||||||||||| |||||||||||||||||| || || ||| | | ||||||| | Sbjct 430 GGATGGCTAGATATGTGTACGGTCTGATATTCCTC-TTGGCAAATTTGTTGGCTTGGGCC 488 Query 575 -TGCTCGTGATTATGGTCGGGGTGCCTTAAGA-AAAG-TGACAAGATTCAAGAACTGTAA 631 || || |||||||| || |||||||| || || ||| || ||||||||| ||||| Sbjct 489 TTG--CGCGATTATGGCCGAGGTGCCTT--GACCGAGATGAGAAAATTCAAGAATTGTAA 544 Query 632 AGGTGGCGAAAACTGTTTGGGGACCGACGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTT 691 || || | | | ||||||||||| || || || ||| |||| ||||||||||||||||| Sbjct 545 AGAAGGTGGAGAGTGTTTGGGGACGGAAGGAGTTTTACGAGTAAGCTTGGGATGTTTTTT 604 Query 692 GTTCTACTTT-GTTATGTTTCTTTCAACAC-TTGGTACGTCGAAA-ACGCATTCATCAAG 748 |||||| ||| |||||||||||||||| | |||| || || ||| ||| ||||||| || Sbjct 605 GTTCTA-TTTCATTATGTTTCTTTCAAC-CGTTGGCACATC-AAAGACGAATTCATCGAG 661 Query 749 AGATAGATGGCATTCTGGATGGTGGTTTGTTAAGCTCATCATGTGGCCTGCCTTAACCAT 808 ||||| ||||||||| ||||||||||||| |||||| ||||||||| || ||||||||| Sbjct 662 AGATAAATGGCATTCAGGATGGTGGTTTGCTAAGCTTTTCATGTGGCTTGGCTTAACCAT 721 Query 809 CATT-CCCTTCTTGCTT-CCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTT 866 | || ||||| ||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 722 C-TTCCCCTTTTTG-TTGCCTTCTTCCATTATTCAGCTTTACGGGGAGATTGCCCATTTT 779 Query 867 GGTGCAGGGGTATTTCTCTTAATACAGCTAATTAGTGTGATCAGTTTCATTCA-ATGGCT 925 |||||||||||||||||| |||| ||||| |||||| | || ||||||||| | |||||| Sbjct 780 GGTGCAGGGGTATTTCTCCTAATTCAGCTCATTAGTATCATTAGTTTCATT-ACATGGCT 838 Query 926 CAACGAATGCTAT-C-AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTA 983 ||| ||||||| | | || | |||||||||||||||||||||| |||| |||||||| || Sbjct 839 CAATGAATGCT-TCCAAG-CACAAAAAGATGCAGAAAGATGCCATGTCCATGTGATGCTA 896 Query 984 CTATCAACTACTTCATACACAGTTTGCATAGTAGGAGTGATTTTGATGTACATTTGGTAC 1043 ||| | |||||| | ||||| || |||||| |||| || |||||||||||||||||||| Sbjct 897 CTAGCGACTACTGCGTACACCGTATGCATATTAGGGGTTATTTTGATGTACATTTGGTAT 956 Query 1044 GCGCCTGATTCTTCATGTCTTCTCAATATATTCTTT-ATAACATGGACTTTGTTCCTCAT 1102 | ||||||| | ||||| |||||||| ||||| ||| || |||||||||||||||||||| Sbjct 957 GTGCCTGATCCATCATGCCTTCTCAACATATT-TTTCATCACATGGACTTTGTTCCTCAT 1015 Query 1103 CCAACTCATGACAAGCATCGCTCTCCATCCTAAAGTTAATGCTGGATACTTGACTCCAGC 1162 ||||||||||||||| ||| ||||||| || ||| | |||||||||| |||||||||||| Sbjct 1016 CCAACTCATGACAAGTATCTCTCTCCACCCCAAAATAAATGCTGGATTCTTGACTCCAGC 1075 Query 1163 TCTTATGGGACTCTATGTTGTGTTTATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGG 1222 |||||||| || |||||||||||||| |||||||| |||||||||||||| ||||| || Sbjct 1076 ACTTATGGGGCTTTATGTTGTGTTTATCTGCTGGTGCGCCATTCGAAGTGAGCCAGTAGG 1135 Query 1223 CGAAAGTTGTAATAGAAAAGCAGCAGCTTCAAACAGAACAGACTGGCTTACCATCATTAG 1282 |||| ||| ||| ||||||| | || ||| | |||||||||||||||||||||||| || Sbjct 1136 AGAAACTTGCAATCGAAAAGCCGAAGGTTCTAGCAGAACAGACTGGCTTACCATCATAAG 1195 Query 1283 CTTTGTGGTTGCGCTACTTGCGATGGTTATCGCGACATTTTCGACAGGAATAGACTCCCA 1342 |||||| ||||| || |||| ||||| || |||||||| || || || |||| ||||| Sbjct 1196 CTTTGTTGTTGCACTGGTTGCAATGGTAATTGCGACATTCTCCACGGGCGTAGATTCCCA 1255 Query 1343 ATGTTTCCAATTTAAGAAA-GATGAGAACGATCAAGAAGAAGAAGCTGAAGATGATGTTC 1401 ||||||||| |||| |||| |||||||| ||| || ||||| || || | | | Sbjct 1256 ATGTTTCCAGTTTA-GAAAAGATGAGAA---TCATGAGGAAGATGC--AA--T--T---C 1302 Query 1402 CATATGGCTATGGATTCTTTCATTTTGTGTTTGCCACAGGAGCAATGTACTTCGCTATGC 1461 | || || ||||||||||| |||||||||||||| || |||||||||||||| || |||| Sbjct 1303 CTTACGGATATGGATTCTTCCATTTTGTGTTTGCTACCGGAGCAATGTACTTTGCGATGC 1362 Query 1462 TACTCATCGGTTGGAACACTCATCATCCCATGAAAAAGTGGACGATTGACGT-GGGATGG 1520 |||| | || ||||||| ||||||| |||||||||||||||| |||||||| ||| ||| Sbjct 1363 TACTTGTTGGCTGGAACATTCATCATTCCATGAAAAAGTGGACCATTGACGTTGGG-TGG 1421 Query 1521 ACAAGTACTTGGGTAAGGGTTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATG 1580 |||||||||||||||||| | |||||||| ||||| |||||| |||| || ||||||||| Sbjct 1422 ACAAGTACTTGGGTAAGGATAGTGAACGAATGGCTCGCGGTTGGCGTTTATATTTGGATG 1481 Query 1581 TTGGTGGCTCC 1591 ||||||||||| Sbjct 1482 TTGGTGGCTCC 1492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74275977750 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5