BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24503.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479960 jgi|Araly1|479960|fgenesh2_kg.3__2661__AT3G24503.1 2569 0.0
> Ahg479960 jgi|Araly1|479960|fgenesh2_kg.3__2661__AT3G24503.1
Length=1627
Score = 2569 bits (1391), Expect = 0.0
Identities = 1510/1569 (96%), Gaps = 2/1569 (0%)
Strand=Plus/Plus
Query 15 agagagagagagaAATACAAAGAAAAATAAATGGAGAACGGCAAATGCAACGGAGCCACG 74
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AGAGAGAGAGAGATATACAAAGAAAAATAAATGGAGAACGGCAAATGCAACGGAGGCACG 60
Query 75 ACGGTGAAGTTACCGGAGATCAAATTCACCAAGCTTTTCATCAACGGCCAG-TTCATTGA 133
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 61 ACGGTGAAGTTACCGGAGATCAAATTCACCAAGCTTTTCATCAACGGCCAGTTTC-TTGA 119
Query 134 TGCTGCTTCAGGGAAGACGTTTGAGACGATAGACCCTAGGAACGGTGAAGTGATCGCAAC 193
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 120 TGCTGCTTCAGGGAAGACGTTTGAGACAATAGACCCAAGGAACGGTGAAGTGATCGCAAA 179
Query 194 AATAGCCGAAGGAGACAAAGAAGACGTTGACTTGGCCGTTAACGCTGCACGTTACGCCTT 253
||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct 180 AATAGCCGAAGGAGATAAAGAAGACGTTGACTTGGCCGTTAAAGCTGCCCGTCACGCCTT 239
Query 254 CGACCATGGTCCTTGGCCTCGCATGACCGGCTTCGAGAGGGCAAAGCTTATCAACAAATT 313
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 240 CGACCATGGTCCTTGGCCTCGCATGACCGGCTTCGAAAGGGCAAAGCTTATAAACAAATT 299
Query 314 CGCAGACTTAATAGAGGAAAACATTGAGGAATTGGCTAAACTTGATGCGGTTGACGGTGG 373
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 300 CGCAGACTTAATAGAGGAAAACATTGAAGAATTGGCTAAACTTGATGCAGTTGACGCCGG 359
Query 374 AAAATTGTTTCAGTTGGGAAAATATGCTGATATTCCGGCCACAGCCGGTCATTTTCGATA 433
||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAATTGTTCCAGTTGGGGAAATTTGCTGATATTCCGGCCACAGCCGGTCATTTTCGATA 419
Query 434 CAATGCGGGTGCAGCAGATAAAATCCACGGCGAGACTCTTAAAATGACGCGTCAATCTTT 493
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 CAATGCGGGTGCAGCGGATAAAATCCACGGCGAAACTCTTAAAATGACGCGTCAATCTTT 479
Query 494 GTTCGGATACACCCTCAAAGAACCAATTGGAGTGGTTGGTAATATCATCCCTTGGAATTT 553
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 GTTCGGATACACCCTCAAAGAACCTATTGGAGTGGTTGGTAATATCATCCCTTGGAATTT 539
Query 554 CCCAAGCATTATGTTTGCCACAAAGGTGGCTCCGGCTATGGCTGCTGGTTGCACCATGGT 613
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 CCCAAGCATTATGTTTGCCACAAAAGTGGCTCCGGCTATGGCTGCTGGTTGCACCATGGT 599
Query 614 GGTCAAGCCAGCTGAACAGACTTCACTCTCTGCTTTGTTCTATGCCCATCTCTCAAAAGA 673
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 600 GGTCAAGCCAGCTGAACAGACCTCACTCTCTGCTCTGTTCTATGCCCATCTCTCAAAAGA 659
Query 674 AGCGGGAATTCCTGATGGTGTGCTCAACATTGTAACTGGTTTTGGATCAACTGCTGGAGC 733
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCAGGAATTCCGGATGGTGTGCTCAACATTGTAACTGGTTTTGGATCAACTGCTGGAGC 719
Query 734 TGCCATTGCCTCCCATATGGACGTAGACAAAGTTAGTTTCACTGGGTCAACAGATGTTGG 793
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 720 TGCCATTGCCTCCCATATGGACATAGACAAAGTTAGTTTCACTGGATCAACAGATGTTGG 779
Query 794 AAGGAAGATAATGCAAGCCGCAGCCGCAAGTAATCTCAAAAAAGTTTCCCTTGAATTAGG 853
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 780 AAGGAAGATAATGCAAGCCGCAGCCACAAGTAATCTCAAAAAAGTTTCCCTTGAATTGGG 839
Query 854 CGGGAAATCGCCACTTCTCATATTCAACGACGCTGATATTGACAAAGCCGCCGATCTTGC 913
|||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 840 CGGGAAATCGCCTCTTCTCATATTCGACGACGCTGATATTGATAAAGCCGCTGATCTTGC 899
Query 914 GCTTCTCGGTTGCTTTTACAACAAGGGTGAAATTTGCGTGGCGAGCTCTCGTGTGTTTGT 973
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 GCTTCTCGGTTGCTTCTACAACAAGGGTGAGATTTGCGTGGCGAGCTCTCGTGTGTTTGT 959
Query 974 TCAAGAAGGTATATACGATAAGGTTGTGGAGAAGTTAGTAGAGAAGGCTAAAGATTGGAC 1033
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 TCAAGAAGGTATATACGATAAGGTTGTGGAGAAGTTAGTGGAGAAGGCTAAAGATTGGAC 1019
Query 1034 CGTTGGTGATCCTTTTGATTCCACTGCTCGACAAGGACCTCAAGTGGATAAAAGACAGTT 1093
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 CGTTGGTGACCCTTTTGATTCCACTGCTCGACAAGGACCTCAAGTGGATAAAAGACAATT 1079
Query 1094 TGAGAAGATTCTATCTTACATTGAGCACGGTAAAAACGAAGGAGCGACCTTATTAACTGG 1153
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 TGAGAAGATTCTATCTTACATTGAGCACGGTAAAAACGAAGGAGCCACCTTATTAACTGG 1139
Query 1154 AGGAAAAGCCATTGGAGACAAAGGATATTTCATCCAACCAACTATATTCGCAGATGTCAC 1213
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1140 AGGTAAAGCCATTGGAGACAAAGGATACTTCATCGAACCAACTATATTCGCAGATGTCAC 1199
Query 1214 TGAGGATATGAAGATATACCAAGATGAAATCTTTGGACCAGTCATGTCACTGATGAAATT 1273
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1200 TGAGGATATGAAGATATACCAAGATGAAATCTTTGGACCAGTCATGTCATTGATGAAATT 1259
Query 1274 CAAGACGGTAGAGGAAGGGATCAAATGCGCAAACAACACGAAATACGGTCTTGCAGCAGG 1333
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAAGACGGTAGAAGAAGGGATCAAATGCGCAAACAACACGAAATACGGTCTTGCAGCAGG 1319
Query 1334 AATACTAAGCCAAGACATAGACTTGATCAACACGGTTTCGAGGTCAATCAAAGCTGGAAT 1393
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AATACTGAGCCAAAACATAGACTTGATCAACACGGTTTCGAGGTCAATCAAAGCTGGAAT 1379
Query 1394 CATTTGGGTTAATTGCTACTTCGGGTTTGATCTTGACTGTCCTTATGGTGGCTACAAGAT 1453
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1380 CATTTGGGTTAATTGCTATTTCGGGTTTGATCTTGATTGTCCTTACGGTGGCTACAAGAT 1439
Query 1454 GAGTGGTAATTGTCGTGAAAGTGGCATGGACGCTCTCGACAACTATCTACAAACCAAATC 1513
|||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1440 GAGTGGCAATTGTCGTGAAAGCGGCATGGATGCTCTTGACAACTATCTACAAACCAAATC 1499
Query 1514 CGTCGTTATGCCTCTTCACAATTCCCCTTGGATGTAATAAAATTGTCCATAACACATAGa 1573
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1500 CGTCGTTATGCCTCTTCACAATTCCCCTTGGATGTAATAAAATTGGCCATAACATATAGA 1559
Query 1574 aaaaaaCTT 1582
| |||||||
Sbjct 1560 AGAAAACTT 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5