BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24520.1
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479964 jgi|Araly1|479964|fgenesh2_kg.3__2665__AT3G24520.1 2002 0.0
> Ahg479964 jgi|Araly1|479964|fgenesh2_kg.3__2665__AT3G24520.1
Length=1661
Score = 2002 bits (1084), Expect = 0.0
Identities = 1241/1314 (94%), Gaps = 21/1314 (2%)
Strand=Plus/Plus
Query 408 aacaacaacaacaacaacaacGTGATCGCACCTTTCATCGTGAAAACATATCAGATGGTC 467
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 363 AACAACAACAACAACAACAACGTGATCGCACCTTTCATTGTGAAAACATATCAAATGGTT 422
Query 468 AATGATCCTTCCACCGATTGGCTCATCACTTGGGGACCTGCTCACAACAGTTTCATAGTC 527
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AATGATCCTTTGACCGATTGGCTCATCACTTGGGGACCTGCTCACAACAGTTTCATAGTC 482
Query 528 GTTGATCCACTCGACTTCTCGCAACGAATCTTACCTGCTTATTTCAAACACAACAATTTC 587
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 483 GTTGATCCACTCGACTTCTCGCAACGGATCTTACCTGCTTATTTCAAACACAACAATTTC 542
Query 588 AGCAGTTTTGTTCGTCAACTCAACACCTATGGGTTTAGGAAAGTGGATCCGGACCGGTGG 647
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AGCAGCTTCGTTCGTCAACTCAACACCTATGGGTTTAGGAAAGTGGATCCGGACCGGTGG 602
Query 648 GAGTTTGCGAACGAGCATTTTCTAAGGGGACAGAAGCATTTGTTGAATAACATAGCGCGT 707
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 603 GAGTTTGCGAACGAGCATTTTCTGAGGGGACAGAAGCACTTGTTGAAGAACATAGCGCGT 662
Query 708 AGGAAACACGCGCGGGGGATGTACGGTCAAGATTTGGAGGACGGTGAGATTGTGAGGGAG 767
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 663 AGGAAACACGCGCGAGGGATGTACGGTCAAGATTTGGAGGACGGTGAGATTGTGAGAGAG 722
Query 768 ATCGAACGGTTAAAAGAAGAGCAGAGGGAGCTAGAGGCAGAGATTCAGAGGATGAACCGG 827
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 723 ATCGAACGGTTAAAAGAAGAGCAAAGGGAGCTAGAGGCAGAGATTCAGAGGATGAACCAA 782
Query 828 AGGATCGAAGCGACGGAGAAGAGACCGGAGCAGATGATGGCGTTTCTTTACAAAGTCGTT 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 AGGATCGAAGCGACGGAGAAGAGACCGGAGCAGATGATGGCGTTTCTTTACAAAGTCGTT 842
Query 888 GAAGATCCTGATCTTCTTCCAAGAATGATGCTCGAGAAAGAACGGACAAAGCAACAACAA 947
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 843 GAAGATCCTGATCTTCTTCCAAGAATGATGCTTGAGAAAGAACGGACAAAGCAACAA--- 899
Query 948 CAAGTTTCCGACAAGAAGAAGCGTCGTGTCACGATGTCGACGGTGAA-GTCAGAGGAAGA 1006
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 900 ---GTTTCCGACAAGAAGAAGCGTCGTGTCACGATGTCGACGGTGAAAG-CAGAGGAGGA 955
Query 1007 AGAAGTGGAAGAAGATGAAGGGAGGGTCTTTAGGGTTATGTCATCATCAACACCGTCGCC 1066
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 956 AGAAGTTGAAGAAGACGAAGGGAGGGTCTTTAGGGTTATTTCATCATCAACGCCGTCACC 1015
Query 1067 GTCATCAACGGAGAATCTTTACCGGAATCATTCACCGGATGGGTGGATTGTTCCTATGAC 1126
||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1016 GTCGTCAACGGAGAATCTTTACCGGAATCATTCACCGGATGGGTGGGTTGTTCCCATGAC 1075
Query 1127 GCAAGGACAGTTTGGTAGTTACGAGACGGGTTTGGTGGCGAAGTCGATGCTCTCGAATTC 1186
||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1076 GCAAGGACAGTTTGGTAATTACGAGACTGGTTTGGTGGCGAACTCGATGCTCTCGAATTC 1135
Query 1187 AACGTCGTCGACGTCATCATCTTTGACGTCGACGTTTTCTTTGCCGGAGAGTGTTAACgg 1246
|||||| |||||||||||||| ||||| || |||||||| || |||||||||||||||||
Sbjct 1136 AACGTCTTCGACGTCATCATCGTTGACCTCCACGTTTTCGTTACCGGAGAGTGTTAACGG 1195
Query 1247 aggaggaggaggaggaTGTGGGAGTATTCAGGGAGAAAGAAGGTATAAAGAAACGGCGAC 1306
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1196 AGGAGGAGGAGGAGGATGTGGGAATATTCAGGGAGAAAGAAGGTATAAAGAAACGGCGAC 1255
Query 1307 GTTTGGAGGAGTGGTAGAGTCAAATCCACCAACAACACCGCCTTATCCATTTTCTCTGTT 1366
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1256 GTTTGGAGGAGTGGTAGAGTCAAATCCACCAACAACACCGCCTTATCCGTTTTCTCTGTT 1315
Query 1367 TCGAGGTGGCTTTTAGCGTTTAGCTTCACATGATATATGATCTTTAGACtttattattgt 1426
|||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1316 TCGAGGTGGCTTTTAGCGTTTAGCTTCACATGATATATGATCTTTA---TT-ATG---GT 1368
Query 1427 tatattattattattatttattttttgtgtgtttgttcttaattattttatgtatAACCA 1486
| |||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 1369 TCTATTATTATTATTATTTATTATTTGTTT-TTTGTTCTTAATTATTTTATGTATAACCA 1427
Query 1487 AAAGAAAGAAAGAAAATAAGGACAGATCCATAGTTGAGTCAGTAGTCATCGTTTGTAGAA 1546
||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1428 AAAGAAAGAAAAAAAATAAGGACAGATCGATAGTTGAGTCAGTAGTCATCGTTTATAGAA 1487
Query 1547 AGTTTTGACAGTATATAATTTCTGATTATATTTGTTA-AAAGTTCATATGTTGACTTTGT 1605
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1488 AGTTTTGACAGTATATAATTTCTGATTATATTTGTTAGAAAGTTCATATGTTGACTTTGT 1547
Query 1606 T-TTCCTTTT-AAAAGTACTTTC-AGGTGACTTGTGTAATATATTCACACTT-GTAATAA 1661
| || |||| ||||||| |||| |||||| ||||||||||||| || |||| |||||||
Sbjct 1548 TATTTGTTTTTAAAAGTATTTTCCAGGTGATTTGTGTAATATATCCATACTTTGTAATAA 1607
Query 1662 CAACAATTTTGATCTTCTTCACTACTTCAGTGTTTTGATTTTTGAATAAAGTAT 1715
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1608 CAACAATTTTCATCTTCTTCACTACTTGAGTGTTTTGATTTTTGAATAAAGTAT 1661
Score = 363 bits (196), Expect = 3e-99
Identities = 280/316 (89%), Gaps = 23/316 (7%)
Strand=Plus/Plus
Query 38 ATTAAGAAAAAACA-ATGCCTAAAT-ATGCATATATTTCAAATGTATCACATAACTTGTG 95
|||||||||||||| | |||| ||| || | ||| | | |||| |||| |||||||||
Sbjct 22 ATTAAGAAAAAACACA-GCCT-AATAAT--A-ATA-TGC-AATGGATCAAATAACTTGTC 74
Query 96 ACATAAGaaa-atataaacaaaacaaaaagggcaaaaaaGACCTGAAAGCTTAGAGGCAC 154
|||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 75 ACATAAGAAATATATTAACAAAACAAAAAGGGCAAAAAAGACCTGAAAGCTTTGAGACAC 134
Query 155 ACCTGCATAGGTCCCACAGTTCACTCGTGACACCGTAAAAGGC-AAAACACGAACCCGCC 213
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 135 ACCTGCATAGGTCCCACAGTTCACTCGTGACACCGTAAAA-GCAAAAACACGAACCCGCC 193
Query 214 ACGTTATCACAAAAAGCAAGCCACGTCAATATAGTCTCACTGTCAACTACACTTAACTTA 273
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 ACGTTA-CACAAAAAGCAAGCCACGTCAATATAGTCTCACTGTCAACTACACTTAACTTA 252
Query 274 CTATTTTCACATCTCATTTTCCTATCTT-T-------ATATAAACCCT-CCAGGCTCCTC 324
|||||||||||| | |||| ||||| || | ||||||||| | |||| ||||||
Sbjct 253 CTATTTTCACATTTTATTTCCCTATTTTATTTTGTTTATATAAACC-TACCAGCCTCCTC 311
Query 325 TTTAATTTCTTTACCA 340
|||||||||||||||
Sbjct 312 CTTAATTTCTTTACCA 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5