BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24530.1
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342616 jgi|Araly1|342616|fgenesh1_pg.C_scaffold_3002379 1757 0.0
> Ahg342616 jgi|Araly1|342616|fgenesh1_pg.C_scaffold_3002379
Length=1494
Score = 1757 bits (951), Expect = 0.0
Identities = 1049/1097 (96%), Gaps = 3/1097 (0%)
Strand=Plus/Plus
Query 503 CAGCAATGGTATGACACCGTTGCATCTTGCGGTATGGTACTCAATTACTGCTAAAGAGAT 562
||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 400 CAG-AACGGTATGACACCATTGCACCTTGCGGTATGGTACTCAATTACTGCGAAAGACAT 458
Query 563 CTCGACTGTTAAGACACTGCTTGATCATAACGCAGATTGCAGTGCAAAAGATAATGAAGG 622
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 459 CTCAACTGTTAAGACACTGCTTGATCATAACGCAGATTGCAGCGCAAAAGATAATGAAGG 518
Query 623 GATGACTCCTTTGGACCATCTGCCTCAAGGGCAAGGCAGTGAGAAGTTACGGGAATTACT 682
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 519 GATGACTCCTTTGGACCATCTGCCTCAAGGACAAGGCAGTGAGAAGTTACGGGAATTGTT 578
Query 683 GCGGTGGTTTCTCCAAGAGCAGAGGAAAAGAAGTGCGCTTGAGCAATGTGGTAAGACAAA 742
||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 579 GCGCTGGTTTCTCCAAGAACAGAGGAAAAGAAGCGCGCTTGAGCAATGCGGTAAGACAAA 638
Query 743 AGCCAAGATGGAACTACTTGAGGATGAGTTATCAAATATTGTTGGATTAAGTGAGCTGAA 802
|||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 639 AGCCAAGATGGAACTACTTGAGGACGAGTTGTCAAATATTGTTGGACTAAGTGAGCTGAA 698
Query 803 GACACAACTGAGGAAATGGGCGAAAGGAATGCTTTTAGATGAAAGGCGAAGGGCTCTTGG 862
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 699 GACACAATTGAGGAAATGGGCAAAAGGAATGCTTTTAGATGAAAGGCGAAGGGCTCTTGG 758
Query 863 GCTAAATATTGGAACCCGAAGACCTCCGCATATGGCATTTCTTGGAAACCCTGGAACAGG 922
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GCTGAACATTGGAACCCGAAGACCTCCGCATATGGCATTTCTTGGAAACCCTGGAACAGG 818
Query 923 TAAAACCATGGTAGCTCGAGTTCTCGGGAAGCTGCTTAACACGGTTGGAATTTTACCAAC 982
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 819 TAAAACCATGGTAGCTCGAGTTCTTGGGAAGTTGCTTAACACGGTTGGAATTTTACCAAC 878
Query 983 TGATAAGGTAACAGAAGTACAGCGTACAGATTTGGTGGGTGAGTTTGTTGGCCATACAGG 1042
|||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 879 TGATAAGGCAACAGAAGTACAGCGTACAGACTTGGTTGGTGAGTTTGTTGGCCATACAGG 938
Query 1043 ACCAAAGACCAGGAGAAAGATCCAAGAAGCTGAGGGAGGAATTCTGTTTGTGGATGAAGC 1102
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 939 ACCAAAGACCAGGAGAAAGATCCAAGAAGCTGAGGGAGGAATTCTGTTTGTCGATGAAGC 998
Query 1103 ATACAGATTGATCCCGATGCAAAAGGCGGACGACAAGGACTACGGTCTAGAAGCTCTGGA 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 ATACAGATTGATCCCGATGCAAAAGGCGGACGACAAGGACTACGGTCTAGAAGCTCTGGA 1058
Query 1163 AGAAATCATGTCAGTCATGGACACAGGGAAAATTGTGGTGATATTTGCAGGATACAGCGA 1222
|||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| ||
Sbjct 1059 AGAAATCATGTCGGTCATGGACACAGGGAAAATCGTGGTGATATTCGCGGGATACAGTGA 1118
Query 1223 GCCCATGAAGCGTGTGATCGCATCAAACGAAGGGTTTTGCAGAAGGGTCACAAAGTTTTT 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GCCCATGAAGCGTGTGATCGCATCAAACGAAGGGTTTTGCAGAAGGGTCACAAAGTTTTT 1178
Query 1283 CAATTTCAGCGACTTCAGTGCCAAGGAACTGGCGCAGATACTACACATCAAGATGAACAA 1342
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1179 CAATTTCAGCGACTTCAGTGCCAAGGAACTAGCGCAGATACTACACATCAAGATGAACAA 1238
Query 1343 CCAAGGAGAGGACACTCTGTTCTATGGTTTCAGATTGCATGAGTCCTGCACTTTGCAGGA 1402
|||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||
Sbjct 1239 CCAAGGAGAGGACACTCTGTTCTACGGCTTCAGATTGCATGAGTCTTGCACTCTGCAGGA 1298
Query 1403 GATAGCGTCACTGATAGAGGCAGAAACAACGGAAAAGCAGAGGAAAG-AGATGAATGGAG 1461
|||||||||||||||||||||||||||||| || |||||||| |||| ||||||| ||||
Sbjct 1299 GATAGCGTCACTGATAGAGGCAGAAACAACCGAGAAGCAGAG-AAAGGAGATGAACGGAG 1357
Query 1462 GATTGGTGGACACGTTACTTGTTAACGCGAGGGAGAATCTTGATCTCCGACTTAGCTTTG 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 GATTGGTGGACACGTTACTTGTTAACGCGAGGGAGAATCTTGATCTCCGACTTAGCTTTG 1417
Query 1522 AGTGTGTTGACACTGAAGAGATTTGTACAATCAAGTTGGAGGATCTAGAGGCCGGGCTTC 1581
| |||||||||||||||||||||||||||||||||||||| || ||||| || |||||||
Sbjct 1418 AATGTGTTGACACTGAAGAGATTTGTACAATCAAGTTGGAAGACCTAGATGCTGGGCTTC 1477
Query 1582 GAGTTTTCTCGCAGTGA 1598
|||||||||||||||||
Sbjct 1478 GAGTTTTCTCGCAGTGA 1494
Score = 577 bits (312), Expect = 1e-163
Identities = 341/355 (96%), Gaps = 2/355 (1%)
Strand=Plus/Plus
Query 153 ATGAACCGACAAAACGGTGGAGGGCAGCGGCTGAGATCCGCTAGACCCACCACAATTCAC 212
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACCGACAAAACGGTGGAGGACAGCGGCTGAGATCCGCTAGACCCACCACAATTCAC 60
Query 213 GATTGTGCTCTCTCCGGCGATCTTATTGCTTTACAGAGACTTCTTAAAGACAATCCTTCT 272
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GATTGTGCTCTCTCCGGTGATCTTATTGCTTTGCAGAGACTTCTTAAAGACAATCCTTCT 120
Query 273 CTTCTCAATGAACGCAATCCCGTCATGTATCATACGCCACTTCATGTTTCTGCTGGTAAT 332
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 CTTCTCAATGAACGCAATCCCGTCATGTATCACACGCCTCTTCATGTTTCTGCTGGTAAT 180
Query 333 GGTAATGTTGATATTGTTAAGTATCTTCTCGCTTGGACTGGATCTGATAAAGTTGAGTTA 392
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 181 GGTAATGTTGATATAGTTAAGTATCTTCTTGCTTGGACTGGATCTGAGAAAGTTGAGTTA 240
Query 393 GAAGCAATGAATACTTATGGTGAGACTCCATTGCATATGGCAGCTAAGAACGGTTGTAAT 452
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 241 GAAGCAATGAATACTTATGGTGAGACTCCATTGCATATGGCAGCAAAGAACGGTTGCAAC 300
Query 453 GAAGCTGCAAAGCTACTCCTTGAG-AGTGGTGCTTTTATCGAAGCTAAAGCCAGC 506
|||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 301 GAAGCTGCGAAGCTACTCCTTGAGCA-TGGTGCTTTTATCGAAGCTAAAGCCAGC 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69514697125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5