BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24570.1 Length=989 Score E Sequences producing significant alignments: (Bits) Value Ahg479971 jgi|Araly1|479971|fgenesh2_kg.3__2672__AT3G24570.1 1343 0.0 Ahg479968 jgi|Araly1|479968|fgenesh2_kg.3__2669__AT3G24560.2 148 6e-35 > Ahg479971 jgi|Araly1|479971|fgenesh2_kg.3__2672__AT3G24570.1 Length=934 Score = 1343 bits (727), Expect = 0.0 Identities = 906/983 (92%), Gaps = 50/983 (5%) Strand=Plus/Plus Query 8 CTGTATCAACCTCTTTCTTCTAACCAATCACAATCGCCTTCTTCCACGGCGGCTCTCCGT 67 |||| |||||||||||||| |||||||||||||||||||||||||||||||| | | | | Sbjct 1 CTGTGTCAACCTCTTTCTTTTAACCAATCACAATCGCCTTCTTCCACGGCGG-T-T-C-T 56 Query 68 CACAGGTGACAGGTCCCAAtctctctctctcGCGGCGACGGCGAATACGGCTGGTACATA 127 | | || ||||||||||| ||| ||||||||||||| ||| ||||||||| Sbjct 57 C-C--GTCACAGGTCCCAA--------TCT--CGGCGACGGCGAAGACGACTGGTACATT 103 Query 128 ATGTTGAAGCTTTGGAGATGGTACCAGCGATGCCTGACGGTTCATCCTGTGAAAACTCAG 187 |||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 104 ATGTCGAAGCTTTGGAGATGGTATCAGCGATGCCTGACGGTTCATCCGGTGAAAACTCAG 163 Query 188 GTCATCAGTTCTGGATTTCTTTGGGGATTTGGCGATGTCACCGCTCAATACATCACTCAT 247 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 164 GTCATCAGTTCTGGATTTCTTTGGGGATTTGGCGATGTCACCGCTCAATACATCACTCAC 223 Query 248 TCCACTGCGAAACGTCGTCTTCTTCGTCTCACCGAAACAAATAAAGATGCTGACGCAGAT 307 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 TCCACTGCGAAACCTCGTCTTCTTCGTCTCACCGAAACAAATAAAGATGCTGACGCAGAT 283 Query 308 GCAGAAATT-AAGGTCAAGTGGAAGCAAGATGCAGAATTCAAAGTCAACTGGAAGCGAGT 366 |||||| || || ||||| ||||||| || | || | | ||| | | | || | | Sbjct 284 GCAGAA-TTCAAAGTCAACTGGAAGCGAG-T--AGC-T--A---TCA-C-G-A-GC-A-T 327 Query 367 AGCTATCACGAGCATGTTTGGATTTGGTTTTGTCGGACCTGTTGGCCACTTCTGGTACGA 426 | | | | | |||||| ||| | ||||||||||||||||||||||||||||| Sbjct 328 -GTT-T---G-G---GTTTGG-TTT--T---GTCGGACCTGTTGGCCACTTCTGGTACGA 372 Query 427 AGGCTTGGATAAATTCATAAAACTGAAGCTTCGATATGTACCAAAGTCAACACGTTTTGT 486 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 373 AGGCCTGGATAAATTCATAAAACTGAAGCTTCGATATGTACCAAAGTCAACACGTTTTGT 432 Query 487 AGCTGCAAAAGTTGCAATGGATGGTCTTATCTTTGGACCTGTAGATCTACTGGTGTTCTT 546 |||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 433 AGCTGCCAAAGTTGCAATGGATGGTCTTATCTTTGGGCCTATAGATCTACTGGTGTTCTT 492 Query 547 CACATACATGGGATTCGCCACAGGAAAGAACACAGCTGAAGTGAAAGAAGGACTCAAGAG 606 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 493 CACATACATGGGATTCGCCACAGGTAAGAACACAGCTGAAGTGAAAGAAGGACTCAAGAG 552 Query 607 AGATTTTCTTCCGGCTCTAGCTCTTGAAGGCGGAGCATGGCCACTTCTTCAGATTGCAAA 666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 553 AGATTTTCTTCCGGCTCTAGCTCTTGAAGGCGGAGCATGGCCACTTCTTCAGATTGCAAA 612 Query 667 CTTCAGATATGTTCCCGTGCAATACCAGTTGCTTTACGTCAACATCTTTTGCCTAGTAGA 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 613 CTTCAGATATGTTCCCGTGCAATACCAGTTGCTTTACGTCAACATCTTTTGCCTAGTAGA 672 Query 727 CAGTGCCTTCCTCTCATGGGTCGAGCAACAGAAGGACGCAGCTTGGAAGCAATGGTTTAC 786 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 673 CAGTGCCTTCCTCTCATGGGTCGAGCAACAAAAGGACGCAGCTTGGAAGCAATGGTTTAC 732 Query 787 TTCATCATTTCAACCATTAAAAGAACGAGGTGGCCAAGGCGGAGTATGATCGTTTTCCCT 846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 733 TTCATCATTTCAACCATTAAAAGAACGAGGTGGCCAAGGCGGAGTATGATCGTTTTCCCT 792 Query 847 GTCATAAACTTTGAATGAAAACAAAAACGAGTGTAATTGGCGATTTTCAATAACGGAAGT 906 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 793 GTCATAAACTTTGAATGAAAACAAAAACGAGTGTAATTGGCGATTTTCAATAATGAAAGT 852 Query 907 TGCCTAGGATACAGATTCTTGAATCAAATATTATTTCGTTTCACGAGAATTCAGTACAAG 966 |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| Sbjct 853 TGCCTAGGATACAGATTCTTGA-TCAAATATTATTTTGTTTCACAAGAATTCAGTACAAG 911 Query 967 TGAATAAATGTCTGTTAGTATTG 989 |||||||||||||||||| |||| Sbjct 912 TGAATAAATGTCTGTTAGAATTG 934 > Ahg479968 jgi|Araly1|479968|fgenesh2_kg.3__2669__AT3G24560.2 Length=2142 Score = 148 bits (80), Expect = 6e-35 Identities = 91/96 (95%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 894 CAATAACGGAAGTTGCCTAGGATACAGATTCTTGAATCAAATATTATTTCGTTTCACGAG 953 |||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| || Sbjct 2142 CAATAACGAAAGTTGCCTAGGATACAGATTCTTG-ATCAAATATTATTTTGTTTCACAAG 2084 Query 954 AATTCAGTACAAGTGAATAAATGTCTGTTAGTATTG 989 ||||||||||||||||||||||||||||||| |||| Sbjct 2083 AATTCAGTACAAGTGAATAAATGTCTGTTAGAATTG 2048 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36750491988 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5