BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24750.1 Length=970 Score E Sequences producing significant alignments: (Bits) Value Ahg342651 jgi|Araly1|342651|fgenesh1_pg.C_scaffold_3002414 1234 0.0 > Ahg342651 jgi|Araly1|342651|fgenesh1_pg.C_scaffold_3002414 Length=771 Score = 1234 bits (668), Expect = 0.0 Identities = 733/765 (96%), Gaps = 2/765 (0%) Strand=Plus/Plus Query 5 AGATCTTTCAATGGCTCTTCAAGTTAGGGAGATCAGAGCCTAGTTCCATCAATTGTACTG 64 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 5 AGATCTTTCAATGGCTCTTCAAGTTAGGGAGATCAGAGCCCAGTTCAATCAATTGTACTG 64 Query 65 ATCATGAACCCACCACAACTCTAACAAATTGTAAAGATCACAGAACAAGAAGATCATCTA 124 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct 65 ATCATGAACCCACCACAACTCTAACAAATTGCACAGTTCACAGAACAAGAAGATCATCTA 124 Query 125 CAAGAGGTTCTAAACATAAAGACCAAAGGAGCTATAGAGGAATCTGGTTATGGTGTAGAA 184 ||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||| Sbjct 125 CAAGAGGGTCTAAACATAAAAACCAGAGGAGTTATAGAGGAATCTGGTTATGGTGTAGAA 184 Query 185 AAGACGTAGCCAAGGCTTGTTTCTCTAGCACTTTTACTTTAAGAAGACTTAATAGCTTTA 244 ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 185 AAGACGTAGCCAAGGCTTGTTTCTCTAGCACACTGACTTTAAGAAGACTTAATAGCTTTA 244 Query 245 GGAGAGGGCATTTGCTTCGCTCCATGGCAAAGATAAAAGCGCAAGGAGGAGAAGAACAAG 304 ||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 245 GGAGAGGACATTTACTTGGCTCCATGGCAAAGATAAAAGCACAAGGAGGAGAAGAACAAG 304 Query 305 TGACATCGACAAGGTTTGATCTGAAAAAGGCTATAAGAGTCTTGC-AACCGGAGAAACAA 363 |||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| Sbjct 305 TGACATCGACAAGGTTTGATCTGAAAAAGGCTATAAAAGTCTT-CAAACCGGAGAAACAA 363 Query 364 GACGATACCAATAAAGAGAAGTCGAAAAGCGAGCAGAGCAAAGGTAAGGCCACACTTTCA 423 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 364 GACGAAACCAATAAAGAGAAGTCGAAAAGCGAGCAGAGCAAAGGTAAGGCCACACTTTTA 423 Query 424 AGAATGAAGGAGCTTATCAAATGGGCTGCAGCAGCCAAATCCGACAAAGCTGTCAAATTC 483 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 424 AGAATGAAGGAGCTCATCAAATGGGCTGCAGCAGCCAAATCCGACAAAGCGGTCAAATTC 483 Query 484 TTTACCCCTAAGATAATGATGGAGTTGAAAAACCGAAGAAAGTTGAAGATGATGAGAGAA 543 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 484 TTTACCCCTAAGATAATGATGGAGTTGAGAAACCGAAGAAAGTTGAAGATGATGAGAGAG 543 Query 544 GTCAATGAAGAAGAATCAACAAAAAGGATGAGTAGTGTATCTGCAAATATAAGTTTGAGA 603 || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 544 GTGAATGAAGAAGAATCAACTAAAAGAATGAGTAGTGTATCTGCAAATATAAGTTTGAGA 603 Query 604 TGGGAGAGTAGTGAGAGTTGCACAACAAACTCTTCCTCTGATCACATCTCTATAGTTTCT 663 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 604 TGGGAGAGTAGTGAGAGTTGCACAACAATCTCTTCCTCTGATCACATCTCTATAGTTTCT 663 Query 664 TCACCAGGAATCCTTGTTTCCTTGAGTCCTACGCCACTCTACCGATGTAGATCCAGGAAA 723 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 664 TCACCAGCAATCCTTGTTTCCTTGAGTCCTACGCCACTCCACCGATGTAGATCCAGGAAA 723 Query 724 TGCAACTGGATCACTACTGATTCTGAATTTGTGGTGTTAGAGTTA 768 | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 724 TACAACTGGATCACTACTGATTCTGAATTTGTGGTGTTAGAGTTA 768 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36026156565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5