BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25150.2 Length=1895 Score E Sequences producing significant alignments: (Bits) Value Ahg951951 jgi|Araly1|951951|scaffold_2600002.1 2259 0.0 > Ahg951951 jgi|Araly1|951951|scaffold_2600002.1 Length=1504 Score = 2259 bits (1223), Expect = 0.0 Identities = 1403/1491 (94%), Gaps = 8/1491 (1%) Strand=Plus/Plus Query 343 GCTATGGCGATGTTAGGTGCACAGCAAGTTCCAGCAGCAGCTTGTACTCCAGATATGGTT 402 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 21 GCTATGGCGATGTTAGGTGCACAGCAAGTTCCAACAGCAGCTTGTACTCCAGATATGGTT 80 Query 403 GGGAATGCTTTTGTGCCCCAGTATTATCACATATTGCATCAATCACCTGAGCATGTTCAC 462 ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 81 GGGAATGCTTTTGTGCCTCAGTATTATCACATATTGCATCAATCTCCTGAGCATGTTCAT 140 Query 463 AGATTTTACCAAGAGATTAGCAAGTTAGGTCGTCCTGAAGAGAATGGTTTAATGAGCATC 522 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 AGATTTTACCAAGAGATTAGCAAGTTAGGTCGTCCTGAAGAGAATGGTTTAATGAGCATT 200 Query 523 ACTTCTACCTTGCAAGCTATTGACAAGAAGATAATGGCGCTTGGTTACGGTGTAATCAGT 582 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| Sbjct 201 ACTTCTACCTTGCAAGCTATTGACAAGAAGATAATGGAGCTAGGTTACGGTGTAGTCAGT 260 Query 583 GCAGAGATAGCTACTGTGGACACACAAGAATCTCATGGAGGTGGT-TATATTGTACTGGT 641 || ||||| || ||||||||| | ||||||||| |||| |||||| | | |||||||||| Sbjct 261 GCGGAGATTGCAACTGTGGACTCCCAAGAATCTTATGGTGGTGGTGT-TCTTGTACTGGT 319 Query 642 GACTGGGTATTTGACGGGAAAAGACAGTGTCAGGAGGACGTTTAGTCAGACCTTCTTCCT 701 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 320 GACTGGGTATTTGACGGGGAAAGACAGTGTCAGGAGGATGTTTAGTCAGACCTTCTTCCT 379 Query 702 TGCTCCACAGGAGACAGGATACTTTGTCTTGAATGATATGTTTCGATTCATTGATGAAGG 761 |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| Sbjct 380 TGCTCCACAGGAGACAGGATACTTTGTCTTGAATGATATGTTCCGATACAGTGATGAAGC 439 Query 762 CACTGTCGTACATGGAAATCAGATTCCAGTGAACAACGTCCAAGCTCCTGTCAACACTTA 821 | | ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| Sbjct 440 CGCAATCGTACATGGAAATCAGATTCTAGTGAACAACATCCAAGTTCCTGTCAACACTTA 499 Query 822 CCAGGACACAGCTGCTGCGAAGGAAATTCCAGATGACTTTGTTCAGGAGAAATATGTCCA 881 |||||| ||||||||| | || || ||||||||||||||||||||||||||||||||||| Sbjct 500 CCAGGATACAGCTGCTTCAAAAGACATTCCAGATGACTTTGTTCAGGAGAAATATGTCCA 559 Query 882 AGAGAATCATGCTGTTAAGCAAACCGAGGTGTTGTCCAAGAGCATTAATGAGCCTGAAAA 941 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 560 AGAGAATCATGCTGTTAAGCAAACCGAGGTGTTGTCCAAGAGCATTAATGGGCCTG---A 616 Query 942 AGTGTTCACGCCCTCTGAAGATGAACAAGTATCAGCTGCAGAAGAAGCTCTGGTGACTGA 1001 |||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| | |||| Sbjct 617 AGTGTTCATTCCCTCCGAAGATGAACAAGTATCAGCTACAGAAGAAGTTCTGGCGCCTGA 676 Query 1002 AACAGTTAATGAAGCACCAATTGAAGTGCAAAAGGTTGGAGAATCTGATTCTAGGACTGG 1061 || |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| Sbjct 677 AATAGTTAATGAAGCACCAATCGAAGCGCAGAAGGTTGGAGAATCTGATTCTAGGACTGG 736 Query 1062 CGAAATTCCAAAGAGATCTTATGCATCAATTGTGAAGGTTATGAAAGAAAATGCTGCACC 1121 |||| |||||||||||||||||||||| |||||||| | |||||||| ||||||||||| Sbjct 737 CGAAGTTCCAAAGAGATCTTATGCATCCATTGTGAA-G--ATGAAAGAGAATGCTGCACC 793 Query 1122 AATGTCTGCTTCGAGAACTCCAACAAAGGTGGAACCAAAGAAACAAGAAGATCAAGCCAT 1181 ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 794 GATGTCTGCTTCGAAAACTCCAACAAAGGTGGAACCAAAGAAACAAGAAGAGCAAGCCAT 853 Query 1182 TCATATCCCTCTACCAACACCATTGTCTGAGAAATCAGATTCAGGAGCAAATGTTGCTGT 1241 |||||||||||||||||||||||||||||||||||||||||||||||||||| | || || Sbjct 854 TCATATCCCTCTACCAACACCATTGTCTGAGAAATCAGATTCAGGAGCAAATATAGCGGT 913 Query 1242 AAATGAGAACAATCAAGAGAATGAAAGAGCTCTAGGTCCATCCATCTATCTAAAGGGTTT 1301 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || Sbjct 914 AAATGAGAACAATCACGATAATGAAAGAGCTCTAGGTCCATCCATCTATCTAAAGGGCTT 973 Query 1302 ACCCCTTGATGCAACACCTGCCTTGCTTGAGAATGAGTTCCAGAAATTTGGACTTATTAG 1361 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 974 ACCCCTTGATACAACACCAGCCTTGCTTGAGAATGAGTTCCAGAAATTTGGACTTATTAG 1033 Query 1362 GACCAATGGAATTCAAGTGAGAAGCCAGAAGGGATTCTGTTTTGGTTTTGTTGAGTTTGA 1421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1034 GACCAATGGAATTCAAGTGAGAAGCCAGAAGGGATTCTGTTTTGGTTTTGTTGAGTTTGA 1093 Query 1422 ATCCGCAAGTTCCATGCAAAGCGCTATCGAGGCATCACCTGTCATGCTCAATGGACACAA 1481 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1094 ATCTGCAAGTTCCATGCAAAGCGCTATCGAGGCATCACCTGTCTTGCTCAATGGGCACAA 1153 Query 1482 AGTTGTTGTGGAGGAAAAGCGATCTACCGCAAGAGGGAACTATAGAGGACGTTCGACGTT 1541 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1154 AGTAGTTGTGGAGGAAAAGCGATCTACCGCAAGAGGGAACTATAGAGGACGTTCGACATT 1213 Query 1542 TGGTGTAAACACAGGCTACAGAAACGAAGGAGGAAGGGGTCGTGGGAGCTTTGGAGGTGG 1601 |||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||| Sbjct 1214 TGGTGTGAACTCAGGCTACAGAAACGAAGGTGGAAGGGGTCGTGGGAGCTATGGTGGTGG 1273 Query 1602 AAGAGGAGGATATGGCCGGACCGATTTCAACGGATATGGTAATAACAGGGGAAACAATAG 1661 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1274 AAGAGGAGGATATGGCCGGACAGACTTCAACGGATATGGTAATAACAGGGGAAACAATAG 1333 Query 1662 AGGCGGATACGCAAACCGAGCAAATGGTGATGGTGGTGGGTTCCCGAGGGCCAATGGTAA 1721 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1334 AGGAGGATACGCAAACCGAGCAAATGGTGACGGTGGTGGGTTCCCGAGGGCCAATGGTAA 1393 Query 1722 CAATGGACGAGTAAGACGTGGTGGCGGAAATGATGCTAACAGAGCTACGAAACCCGTGGA 1781 || ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 1394 TAACGGACGTGTAAGACGTGGTGGCGGAATTGATGCTAACAGAGCTACTAAACCCGTGGA 1453 Query 1782 TGATGCTCCCCGTGTGTCTGTTGCTGCGTAAATGTGCTTTTGAAACAAAAA 1832 |||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 1454 TGATGCTCCCCGTGTGTCTGTTACTGCGTAAATGTGCTTTTGAACCAAAAA 1504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71190667905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5