BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25290.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905694 jgi|Araly1|905694|Al_scaffold_0003_2822 1890 0.0
> Ahg905694 jgi|Araly1|905694|Al_scaffold_0003_2822
Length=1179
Score = 1890 bits (1023), Expect = 0.0
Identities = 1126/1177 (96%), Gaps = 2/1177 (0%)
Strand=Plus/Plus
Query 25 TCTTCTTCTTCCGTAAGAATCTCTCTCTCCTTCATTTTCTTGGCTCTGCTAATCTCACCG 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCTTCTTCTTCCGTAAGAATCTCTCTCTCCTTCATTTTCTTGGCTCTGCTAATCTCACCG 63
Query 85 GCTGTGTCACAAACATGTAAGTCACAGACTTTTTCCGGCGATAAAACTTACCCTCACTGC 144
|||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 64 TCTGTCTCACAAACCTGTAAGTCACAGACGTTTTCCGGCGATAAAACTTACCCTCACTGC 123
Query 145 CTTGACCTCCCTCAACTCAAAGCCTTCCTTCATTATTCCTATGATGCCTCTAACACAACT 204
||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||| |
Sbjct 124 CTTGACCTCCCTCAACTCAAAGCCTTCCTACACTATTCCTACGATGCCTCCAACACAAGT 183
Query 205 CTGGCCGTCGTCTTCTCTGCTCCGCCGGCAAAGCCTGGCGGATGGATCGCGTGGGCGATT 264
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 184 CTCGCCGTCGTCTTCTCTGCTCCGCCGGCAAAGCCTGGTGGATGGATCGCGTGGGCGATT 243
Query 265 AATCCAAAGGCTACCGGTATGGTCGGATCTCAAACCCTTGTCGCTTACAAGGATCCAGGT 324
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 244 AATCCAACGGCTACCGGTATGGTCGGAGCTCAAACCCTTGTCGCTTACAAGGATCCAGGT 303
Query 325 AATGGTGTTGCCGTGGTGAAGACGCTAAACATTAGCTCCTATAGCTCGCTGATTCCGTCG 384
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 304 AATGGTGTTGCCGTTGTGAAGACGCTAAACATTAGCTCCTATAGTTCGCTGATTCCGTCG 363
Query 385 AAGCTGGCGTTTGATGTTTGGGATATGAAAGCCGAGGAGGCGGCGAGAGATGGAGGAAGT 444
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 364 AAATTGGCGTTTGATGTTTGGGATATGAAAGCCGAGGAGGCGGCGAGGGATGGAGGAACT 423
Query 445 TTGAGAATCTTTGCTAGGGTTAAGGTTCCGGCTGATTTGGTGGCAAAGGGAAAGGTTAAT 504
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 424 TTGAGAATCTTTGCTAGGGTTAAGGTTCCGGCTGATTTGGTTGCAAAGGGAAAGGTTAAT 483
Query 505 CAGGTTTGGCAAGTTGGTCCTGAATTAGGTCCTGGTGGAATGATTGGGAGGCACGCTTTC 564
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 484 CAGGTTTGGCAAGTTGGTTCTGAATTAGGTCCTGGTGGAATGATTGGTAGGCACGCTTTC 543
Query 565 GACTCGGCGAATCTCGCTTCTATGAGCTCTCTTGATTTAAAAGGTGACAACAGCGGTGGC 624
||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 544 GACCCGTCGAATCTCGCTTCTATGGGCTCTCTTGATTTAAAAGGTGACAACAGCTGTGGC 603
Query 625 ACAATCTCTGGAGGCGACGAGGTAAATGCCAAGATCAAGAACAGAAATATTCATGGGATA 684
||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 604 ACAATCTCTGGGGGCGGCGAAGTAAATGCCAAAATCAAGAACAGAAATATTCATGGGATA 663
Query 685 TTAAACGCAGTGAGTTGGGGAATTTTGTTTCCGATAGGAGCAATAATAGCCAGGTACATG 744
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTAAACGCGGTGAGTTGGGGAATTTTGTTTCCGATAGGAGCAATAATAGCCAGGTACATG 723
Query 745 AGAGTATTTGACTCGGCCGATCCGGCCTGGTTTTACCTCCACGTTTCTTGTCAATTCTCT 804
||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 724 AGAGTATTTGAATCCGCCGATCCGGCCTGGTTTTACCTCCATGTGTCTTGTCAATTCTCT 783
Query 805 GCTTATGTCATCGGTGTTGCCGGTTGGGCTACCGGACTTAAGCTCGGTAACGAGTCCGAG 864
||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| | |
Sbjct 784 GCTTATGTCATCGGTGTTGCCGGTTGGGCCACCGGACTCAAGCTAGGCAACGAGTCAGCG 843
Query 865 GGTATTCGCTTCTCCGCCCACCGTAACATCGGCATTGCCCTCTTCACCCTTGCCACCATT 924
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 844 GGTATTCGCTTCTCCGCCCACCGTAACATCGGTATTGCCCTCTTCACCCTTGCCACCATT 903
Query 925 CAGATGTTTGCGATGTTGTTGCGGCCTAAGAAAGATCACAAGTACAGATTCTATTGGAAT 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 CAGATGTTTGCGATGTTGTTGCGGCCTAAGAAAGATCACAAGTACAGATTCTATTGGAAT 963
Query 985 ATCTACCACCATGGAGTCGGTTATGCGATCCTCACCCTTGGGATCATTAATGTCTTCAAA 1044
|||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||
Sbjct 964 ATCTACCACCATGGAGTCGGCTATGCAATCCTCATCCTCGGGATCATTAATGTCTTCAAA 1023
Query 1045 GGTCTCAACATCTTGAAACCACAAGACACGTACAAGACGGCTTACATTGCAGTGATTGCC 1104
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GGTCTCAACATATTGAAACCACAAGACACGTACAAGACGGCTTACATTGCAGTGATTGC- 1082
Query 1105 G-TTCTTGGAGGCATTGCTTTGCTCTTAGAAGCCATCACTTGGGTCGTTGTACTCAAGAG 1163
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GATTCTTGGAGGAATTGCTTTGCTCTTAGAAGCCATCACTTGGGTCGTTGTACTCAAGAG 1142
Query 1164 AAAATCAAACAACTCAATGAAGCCTCTTAGGACCTAA 1200
||||||||||||||||||||||||||||||||| |||
Sbjct 1143 AAAATCAAACAACTCAATGAAGCCTCTTAGGACATAA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5