BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25480.1 Length=1122 Score E Sequences producing significant alignments: (Bits) Value Ahg480047 jgi|Araly1|480047|fgenesh2_kg.3__2748__AT3G25480.1 1421 0.0 > Ahg480047 jgi|Araly1|480047|fgenesh2_kg.3__2748__AT3G25480.1 Length=997 Score = 1421 bits (769), Expect = 0.0 Identities = 931/1008 (92%), Gaps = 15/1008 (1%) Strand=Plus/Plus Query 3 ATTACCAATGACGTCTCTTCCAATAATCCTCGCATCCTCTCCACTGCGAAACCTAACCAA 62 ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1 ATTACTAATGACGTCTCTTCCGATAATCCTCGCATCCTCTCCACTGCGAAACCTAACAAA 60 Query 63 ACCTTGTTCAACTTCTCAAATCCCAAAACCCATTCAAAATTCTA-CAAAACAACCTCCAA 121 |||||||||||||||||||| ||||||||||| || |||||| | ||||||||||||||| Sbjct 61 ACCTTGTTCAACTTCTCAAACCCCAAAACCCAATCCAAATTC-ACCAAAACAACCTCCAA 119 Query 122 TACATCTCCTAACCAAAACCAATCTCTCTGTAACCATTTCCCAACTAATTATCACTTCCC 181 |||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||| Sbjct 120 TACATCTCCTAACCAAAACCCATCTCTCTGTAACCATTTCCCAACTCATCATCACATCCC 179 Query 182 CTGTTCTCGCATCTGAATCATTCGACTCAATTTCATCAGACCCATCTTCTGGAAAAATCG 241 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 180 CTGTTCTCGCATCTGAATCATTCGACTCAATTTCATCAGACCCATCTCCTGGAAGAATCG 239 Query 242 ATTTAGAGTCAATTTTGGTCACAATTGATAATTTCTTCAACAAGTATCCATTTTTCGTAG 301 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ATTTGGAGTCAATTTTAGTCACAATTGATAATTTCTTCAACAAGTATCCATTTTTCGTAG 299 Query 302 CGGGATGTACTTTTACCTATCTTGTTGTTTATCCAGCTGTGATGTTTTACTTGAGGAAGT 361 ||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct 300 CGGGATGTACTTTTATCTATCTTGTGGTTTATCCATCTGTGATTTTTTACTTGAGGAAGT 359 Query 362 ATAAACCAATATCCGCCATGAACGCGTTTCGTAAGCTTAAGAATG-AATCTGATTCTCAG 420 |||||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||| Sbjct 360 ATAAACCAATATCCGCCATGAATGCGTTTCGTAAGCTTAAGA-TGGAATCTGATTCGCAG 418 Query 421 CTTTTGGATATTAGAGATG-TCAAGACTTTGGCTTTGTTAGCATCACCGAATCTTAAGTT 479 ||||||||||||||||||| | |||||||||||| || |||||||||||||||||||| Sbjct 419 CTTTTGGATATTAGAGATGAT-AAGACTTTGGCTACATTGGCATCACCGAATCTTAAGTT 477 Query 480 TTTGGGTAAGAGTTCTGTTCAGGTTCCGTTTAGTGAGAATGATGAAGAAGGGTTTTTGAC 539 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| Sbjct 478 TTTGGGTAAGAGTTCTGTTCAAGTTCCGTTTAGTGAGAATGATGAAGATGGGTTCTTGAA 537 Query 540 GAAAGTTAAAGGAAGCTTCTCTGATGCTGAGAATACAGTTGTTTGTGTTCTTGATAATTT 599 |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| Sbjct 538 GAAAGTTAAAGGAAGCTTCTTTGACCCTGAAAATACAGTTGTTTGTGTTCTTGATAATTT 597 Query 600 TGATGGTAACTCGTCGAAAGTAGCTGAATTGCTGATCAAGAATGGTTTCAAAGAGGCTTA 659 ||||||||| ||||||||||| || |||||| |||||||||||||||||||||| ||||| Sbjct 598 TGATGGTAATTCGTCGAAAGTGGCGGAATTGTTGATCAAGAATGGTTTCAAAGAAGCTTA 657 Query 660 TTATATTAGAGGCGGCGCGAGAGGGAAGAATGGTTGGTTGGCTATTCAAGAAGAGCTTTT 719 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 658 TTATATTAGAGGTGGCGCGAGAGGGAAGAATGGTTGGTTGGCGATTCAAGAAGAGCTTTT 717 Query 720 GCCTCCACCGGTGCATATGTACACTGCGAAAAACGTAAAATCTTCAAACAACAATGAAGC 779 ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || Sbjct 718 GCCTCCACCGGTGCATATGTATACTGCGAAAAACGTAAAATCTTCAACCAACAATGAGGC 777 Query 780 GTCTGTTGTTGGAACTGAGAACTAGTTCAAGAACATAGCGTAATGTGGCAGGACATGGTA 839 ||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||| || Sbjct 778 GTCAATTGTTGGAACTGAGAACTAGTTCGAGAACAGAGCGTAATGTGGCAAGACATGATA 837 Query 840 CTACCATGTC-ACTGGAACATGAGAAAGCTTCTTTAGGTGGAAGAGTAGCTATATATTGA 898 |||||| | | | ||||| |||||||||||| ||||||||||||| ||| |||||||||| Sbjct 838 CTACCA-GACCATTGGAATATGAGAAAGCTTATTTAGGTGGAAGACTAGTTATATATTGA 896 Query 899 AAGACTTGTTTAGACCTCAAGACAACTCTATGCTTAGCAAAAAAGCTAACCTTGTCTACT 958 |||||||||||||| |||||| | ||| ||||||| || || ||||||||||||||| Sbjct 897 AAGACTTGTTTAGATCTCAAGGCCACT--ATGCTTACCAGAA--GCTAACCTTGTCTAC- 951 Query 959 ACATATTGATTTCTCAGACCATTCCAATAAAATGAGACTTGTTATTAT 1006 | || ||||||||||| | |||||||||||||||||||||||||||| Sbjct 952 A--TACTGATTTCTCAGGCAATTCCAATAAAATGAGACTTGTTATTAT 997 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41820839949 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5