BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25490.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921093 jgi|Araly1|921093|scaffold_102374.1 1232 0.0
Ahg472363 jgi|Araly1|472363|fgenesh2_kg.1__2317__AT1G21270.1 1203 0.0
Ahg472361 jgi|Araly1|472361|fgenesh2_kg.1__2315__AT1G21245.1 702 0.0
Ahg911962 jgi|Araly1|911962|Al_scaffold_0001_2216 667 0.0
Ahg905735 jgi|Araly1|905735|Al_scaffold_0003_2863 595 3e-169
Ahg921094 jgi|Araly1|921094|scaffold_102375.1 588 5e-167
Ahg905733 jgi|Araly1|905733|Al_scaffold_0003_2861 492 4e-138
Ahg895839 jgi|Araly1|895839|Al_scaffold_0006_3835 111 1e-23
> Ahg921093 jgi|Araly1|921093|scaffold_102374.1
Length=2248
Score = 1232 bits (667), Expect = 0.0
Identities = 1059/1247 (85%), Gaps = 31/1247 (2%)
Strand=Plus/Plus
Query 72 AGAAGAGAATAAGTACTTAGTCTGGATTA-TGATTATTCTTGCAAACACCACCAACATT- 129
||||||| ||||||||||| |||| || || || |||||| || ||||| | ||
Sbjct 1001 AGAAGAGCCTAAGTACTTAGGATGGACTACTG-TTCTTCTTGGAACCACCATTGGC-TTC 1058
Query 130 TTGAGCCTCGTGCGTAGCATTAGCTATATAAAAAATATAAGGAAGCACCAGAAGGACACC 189
|||| | || ||| || ||||||||||||| || | | || |||||||| ||| |||||
Sbjct 1059 TTGATCATCCTGCTTATCATTAGCTATATACAACAGAAAATGAAGCACCGGAAAAACACC 1118
Query 190 AAGATCCAACGACAATTATTCTTTGAGAAAAATGGCGGTGGCATGTTGATAGAGCGACTC 249
|| | |||||| |||||| ||| ||||||| || |||||||||||| |||||||
Sbjct 1119 --GA-GCTGCGACAACAATTCTTCGAGCAAAATGGTGGCGGCATGTTGATACAGCGACTT 1175
Query 250 TCGGGGGCAGGGTCATCAAACATTGATTTCAAAATCTTTACGGAGGAAGACATGAAGGAA 309
|| || |||||| ||||||| |||||| ||||||||||||| ||||||| ||||||||||
Sbjct 1176 TCAGGAGCAGGGCCATCAAATATTGATGTCAAAATCTTTACTGAGGAAGGCATGAAGGAA 1235
Query 310 GCAACTAATGGTTATGATGTGAGCAGAATCTTGGGTCAAGGAGGCCAATGG-ACAGTCTA 368
||||||||||||||||||| |||||||||| |||| || ||||||||| || ||||||||
Sbjct 1236 GCAACTAATGGTTATGATGAGAGCAGAATCCTGGGGCAGGGAGGCCAA-GGAACAGTCTA 1294
Query 369 CAAAGGGATATTGCCTGACAACTCCATC-GTTGCTATAAAGAAAACTCGGCTAGGAGACA 427
|||||||||| |||| |||||||||| | ||||||||||||||| ||||||| ||||||
Sbjct 1295 CAAAGGGATACTGCCAGACAACTCCA-CAGTTGCTATAAAGAAAGCTCGGCTTGGAGACC 1353
Query 428 ACAACCAAGTAGAGCAGTTCATCAACGAAGTGCTCGTGCTTTCACAAATTAACCACAGGA 487
| ||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 1354 GTAGCCAAGTAGAGCAGTTCATCAACGAAGTTCTTGTGCTTTCACAAATCAACCATAGGA 1413
Query 488 ACGTTGTCAAGCTCTTGGGTTGCTGTCTAGAGACTGAAGTTCCCTTGTTGGTCTATGAAT 547
|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1414 ACGTGGTCAAACTCTTGGGCTGCTGTCTAGAGACTGAAGTTCCCTTGTTGGTCTATGAGT 1473
Query 548 TCATTACCGGTGGCTCCCTTTTCGATCACTTGCACGGTTCCATGTTTGTTTCTTCTCTTA 607
||||| || ||||| | ||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 1474 TCATTTCCAGTGGCACTCTTTTCGATCACTTGCACGGTTCTATGTTTGATTCTTCGCTTA 1533
Query 608 CATGGGAACACCGCCTGGA-GATAGCAATAGAAGTTGCTGGAGCTATAGCGTATCTTCAC 666
||||||||||||| || || |||||| |||||| | |||||| || ||||||||||||||
Sbjct 1534 CATGGGAACACCGTCT-GAGGATAGCGATAGAAATCGCTGGAACTCTAGCGTATCTTCAC 1592
Query 667 TCCGGTGCTTCTATTCCAATCATCCATCGCGATATCAAAACTGAAAATATTCTCTTGGAT 726
||| |||||||||||| ||||||||||| ||| |||| || | |||||||||||||||
Sbjct 1593 TCCTCTGCTTCTATTCCGATCATCCATCGGGATGTCAAGACCGCTAATATTCTCTTGGAT 1652
Query 727 GAAAACTTAACTGCAAAAGTAGCTGACTTTGGCGCTTCAAAGTTGA-AGCCAATGGATAA 785
|||||||||||||||||||||||||||||||| ||||||| | ||| | || ||||| |
Sbjct 1653 GAAAACTTAACTGCAAAAGTAGCTGACTTTGGTGCTTCAAGGCTGATA-CCGATGGACCA 1711
Query 786 AGAACAGCTCACCACTATGGTGCAAGGCACTCTCGGATATTTAGACCCAGAATACTATAC 845
||| |||||||| || | ||||||||| ||||| || |||||||||||||||||||| |
Sbjct 1712 AGAGCAGCTCACAACAACGGTGCAAGGAACTCTTGGCTATTTAGACCCAGAATACTACAA 1771
Query 846 CACATGGCTTCTGAACGAAAAGAGCGATGTTTATAGCTTTGGGGTAGTCCTCATGGAACT 905
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1772 CACAGGGCTTCTGAACGAAAAGAGCGATGTTTATAGCTTTGGGGTAATCCTCATGGAACT 1831
Query 906 GATATCAGGTCAAAAGGCATTGTGCTTTGAAAGGCCAGAGACTTCAAAACATTTGGTGAG 965
| | |||||| ||||||| |||||||||||| ||||| |||| ||||||||| | |||||
Sbjct 1832 GCTCTCAGGTGAAAAGGCTTTGTGCTTTGAACGGCCACAGACCTCAAAACATCTAGTGAG 1891
Query 966 TTACTTTGTTTTGGCCACGAAAGAGAATAGGTTGCATGAGATTATTGACGACCAAGTGT- 1024
||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1892 TTACTTTGTTTCCGCCATGAAAGAGAATAGGTTGCATGAGATTATTGACGGTCAAGT-TA 1950
Query 1025 TGAACGAGGAAAACCAGAGGGAAATCC-ATGAAGCTGCAAGAGTTGCTG-TTGAATGTAC 1082
|||||||| | || |||||||| |||| | ||| |||||||| |||| | |||| || ||
Sbjct 1951 TGAACGAGTATAATCAGAGGGAGATCCGA-GAATCTGCAAGAATTGC-GCTTGAGTGCAC 2008
Query 1083 AAGACTAA-AGGGAGAGGAAAGGCCAAGGATGATAGAAGTAGCTGCAGAGCTAGAAACGT 1141
|||| | | ||| ||||||||||||||| |||| ||||||||||||| |||||||| | |
Sbjct 2009 AAGAATTACAGG-AGAGGAAAGGCCAAGTATGAAAGAAGTAGCTGCAAAGCTAGAAGCCT 2067
Query 1142 TGAGAGCCAAAACGACCAAACATAATTGGTTGGATCAGTATCCTGAAG-AGAATGTA-CA 1199
|||||| |||||| ||||||||||| |||| ||||| ||||| ||| || || | ||
Sbjct 2068 TGAGAGTCAAAACAACCAAACATAAGTGGTCAGATCAATATCCC-AAGGAGGTTG-AGCA 2125
Query 1200 CTTGCTTGGTAGT--AACATCGTGTCAGCACAAGGCCATACCAGTAGCCGTGGTTATGAC 1257
||| ||||| || || ||| | || || ||||| ||||||||||| ||| ||||||
Sbjct 2126 TTTGGTTGGT-GTTCAA-ATCTTATCGGCGCAAGGTGATACCAGTAGCATTGGCTATGAC 2183
Query 1258 AACAACAAGAATGTAGCAAGGTTTGACATTGAAGCTGGCCGCTGATA 1304
| || |||||||||||||| || ||||||||| |||||||||||||
Sbjct 2184 AGCATCAAGAATGTAGCAATATTGGACATTGAAACTGGCCGCTGATA 2230
> Ahg472363 jgi|Araly1|472363|fgenesh2_kg.1__2317__AT1G21270.1
Length=2396
Score = 1203 bits (651), Expect = 0.0
Identities = 987/1147 (86%), Gaps = 31/1147 (3%)
Strand=Plus/Plus
Query 175 CACCAGAAGGACACCAAGATCCAACGACAATTATTCTTTGAGAAAAATGGCGGTGGCATG 234
||||||||||||||| || | | |||||| |||||| ||| |||| || |||||||||
Sbjct 1064 CACCAGAAGGACACCGAGCT-C--CGACAAAAATTCTTCGAGCAAAACGGTGGTGGCATG 1120
Query 235 TTGATAGAGCGACTCTCGGGGGCAGGGTCATCAAACATTGATTTCAAAATCTTTACGGAG 294
|||||||||||| |||| || |||||| ||||||| ||||| |||||||||| || |||
Sbjct 1121 TTGATAGAGCGAGTCTCAGGAGCAGGGCCATCAAATGTTGATGTCAAAATCTTCACTGAG 1180
Query 295 GAA-GACATGAAGGAAGCAACTAATGGTTATGATGTGAGCAGAATCTTGGGTCAAGGAGG 353
||| || |||||||||||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 1181 GAAGGA-ATGAAGGAAGCAACTAATGGTTATGATGAGAGCAGAATCCTGGGTCAGGGAGG 1239
Query 354 CCAATGG-ACAGTCTACAAAGGGATATTGCCTGACAACTCCATCGTTGCTATAAAGAAAA 412
|||| || ||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1240 CCAA-GGAACAGTCTACAAAGGGATATTGCCAGACAATTCCATAGTTGCTATAAAGAAAG 1298
Query 413 CTCGGCTAGGAGACAACAACCAAGTAGAGCAGTTCATCAACGAAGTGCTCGTGCTTTCAC 472
||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 CTCGGCTTGGAGACTGTAGCCAAGTAGAGCAGTTCATCAACGAAGTGCTCGTGCTTTCAC 1358
Query 473 AAATTAACCACAGGAACGTTGTCAAGCTCTTGGGTTGCTGTCTAGAGACTGAAGTTCCCT 532
|||| ||||| |||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 1359 AAATCAACCATAGGAACGTGGTCAAGCTCTTGGGCTGTTGTCTAGAGACTGAAGTTCCCT 1418
Query 533 TGTTGGTCTATGAATTCATTACCGGTGGCTCCCTTTTCGATCACTTGCACGGTTCCATGT 592
||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 1419 TGTTGGTCTATGAGTTCATCACCAATGGCACCCTTTTCGATCACTTGCACGGTTCCATGT 1478
Query 593 TTGTTTCTTCTCTTACATGGGAACACCGCCTGGAG-ATAGCAATAGAAGTTGCTGGAGCT 651
||| |||||| ||||||||||||||||| ||| || |||||||||||| | |||||| ||
Sbjct 1479 TTGATTCTTCGCTTACATGGGAACACCGTCTG-AGGATAGCAATAGAAATCGCTGGAACT 1537
Query 652 ATAGCGTATCTTCACTCCGGTGCTTCTATTCCAATCATCCATC-GCGATATCAAAACTGA 710
| || |||||||||||| |||||| |||||||||||||| | | |||||||| ||||
Sbjct 1538 CTTGCATATCTTCACTCCTCTGCTTCCATTCCAATCATCCA-CAGAGATATCAAGACTGC 1596
Query 711 AAATATTCTCTTGGATGAAAACTTAACTGCAAAAGTAGCTGACTTTGGCGCTTCAAAGTT 770
||||||||| | |||||||||||||||||||||||||| |||||||| ||||||| | |
Sbjct 1597 TAATATTCTCCTAGATGAAAACTTAACTGCAAAAGTAGCCGACTTTGGTGCTTCAAGGCT 1656
Query 771 GA-AGCCAATGGATAAAGAACAGCTCACCACTATGGTGCAAGGCACTCTCGGATATTTAG 829
|| | || ||||||||||| |||||||| || ||||||||||||||||| || || ||||
Sbjct 1657 GATA-CCGATGGATAAAGAGCAGCTCACAACAATGGTGCAAGGCACTCTAGGTTACTTAG 1715
Query 830 ACCCAGAATACTATACCACATGGCTTCTGAACGAAAAGAGCGATGTTTATAGCTTTGGGG 889
||||||| ||||| | |||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 1716 ACCCAGAGTACTACAACACAGGGCTTCTGAACGAAAAGAGCGATGTTTACAGCTTCGGGG 1775
Query 890 TAGTCCTCATGGAACTGATATCAGGTCAAAAGGCATTGTGCTTTGAAAGGCCAGA--GAC 947
||||||| ||||||||| | ||||||||||||||||||||||| ||||| ||| | | |
Sbjct 1776 TAGTCCTAATGGAACTGCTCTCAGGTCAAAAGGCATTGTGCTTCGAAAGACCACAATG-C 1834
Query 948 TTCAAAACATTTGGTGAGTTACTTTGTTT-TGGCCACGAAAGAGAATAGGTTGCATGAGA 1006
| |||||||| ||||||| | ||||| || || |||| ||||| |||||||| |||||||
Sbjct 1835 T-CAAAACATCTGGTGAGCTGCTTTGCTTCTG-CCACAAAAGATAATAGGTTCCATGAGA 1892
Query 1007 TTATTGACGACCAAGTGTTGAACGAGGAAAACCAGAGGGAAATCCATGAAGCTGCAAGAG 1066
||||||| | |||||| |||||||||| || |||||||| ||||| ||||||||||||
Sbjct 1893 TTATTGATGGGCAAGTGATGAACGAGGATAATCAGAGGGAGATCCAGGAAGCTGCAAGAA 1952
Query 1067 TTGCTGTTGAA-TGTACAAGACTAAAGGGAGAGGAAAGGCCAAGGATGATAGAAGTAGCT 1125
|||| | || ||||||||| | | |||||| |||||||||||||||| ||||||||||
Sbjct 1953 TTGCAAAT-AAGTGTACAAGATTGACGGGAGAAGAAAGGCCAAGGATGAAAGAAGTAGCT 2011
Query 1126 GCAGAGCTAGAAACGTTGAGAGCCAAAACGACCAAACATAATTGGTTGGATCAGTATCCT 1185
|||||| | || | |||| || |||||| || |||||||| |||| |||||||||||||
Sbjct 2012 GCAGAGTTGGAGGCCTTGAAAGTCAAAACAACTAAACATAAGTGGTCGGATCAGTATCCT 2071
Query 1186 GA-AGAG---A-AT-GTACACTTGCTTGGTAGT--AACATCGTGTCAGCACAAGGCCATA 1237
|| | || | || | | ||||||| ||| || || ||| | ||| |||||||| |||
Sbjct 2072 GAGACAGGGGAGATTGAAAACTTGCTCGGT-GTTCAA-ATCTTATCAACACAAGGCAATA 2129
Query 1238 CCAGTAGCCGTGGTTATGACAACAACAAGAATGTAGCAAGGTTTGACATTGAAGCTGGCC 1297
||||||||||||||||||||| || |||||||||||||| | ||||||||||||||||
Sbjct 2130 CCAGTAGCCGTGGTTATGACAGCATCAAGAATGTAGCAATATCGGACATTGAAGCTGGCC 2189
Query 1298 GCTGATA 1304
|||||||
Sbjct 2190 GCTGATA 2196
> Ahg472361 jgi|Araly1|472361|fgenesh2_kg.1__2315__AT1G21245.1
Length=500
Score = 702 bits (380), Expect = 0.0
Identities = 461/501 (92%), Gaps = 2/501 (0%)
Strand=Plus/Plus
Query 802 ATGGTGCAAGGCACTCTCGGATATTTAGACCCAGAATACTATACCACATGGCTTCTGAAC 861
|||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGTGCAAGGCACCCTCGGCTATTTAGACCCAGAATACTATACCACAGGGCTTCTGAAC 60
Query 862 GAAAAGAGCGATGTTTATAGCTTTGGGGTAGTCCTCATGGAACTGATATCAGGTCAAAAG 921
||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GAAAAAAGTGATGTTTATAGCTTTGGGGTAGTCCTCATGGAACTGCTATCAGGTCAAAAG 120
Query 922 GCATTGTGCTTTGAAAGGCCAGAGACTTCAAAACATTTGGTGAGTTACTTTGTTTTGGCC 981
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 121 GCATTGTGCTTTGAACGGCCAGAGAATTCAAAACATTTGGTGAGTTACTTTGTTTTTGCC 180
Query 982 ACGAAAGAGAATAGGTTGCATGAGATTATTGACGACCAAGTGTTGAACGAGGAA-AACCA 1040
||||||||||||||||| |||||||||||||| | |||||||||||||||| || || ||
Sbjct 181 ACGAAAGAGAATAGGTTACATGAGATTATTGATGGCCAAGTGTTGAACGAG-AACAATCA 239
Query 1041 GAGGGAAATCCATGAAGCTGCAAGAGTTGCTGTTGAATGTACAAGACTAAAGGGAGAGGA 1100
||||| |||||| |||||||||||||||||| |||||||||||||||| | |||||| ||
Sbjct 240 GAGGGGAATCCAGGAAGCTGCAAGAGTTGCTATTGAATGTACAAGACTGATGGGAGAAGA 299
Query 1101 AAGGCCAAGGATGATAGAAGTAGCTGCAGAGCTAGAAACGTTGAGAGCCAAAACGACCAA 1160
|||||||||||||| ||||||||||| |||||||||||| ||||| | |||||| |||||
Sbjct 300 AAGGCCAAGGATGAAAGAAGTAGCTGTAGAGCTAGAAACTTTGAGCGTCAAAACAACCAA 359
Query 1161 ACATAATTGGTTGGATCAGTATCCTGAAGAGAATGTACACTTGCTTGGTAGTAACATCGT 1220
|||||| |||| |||||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct 360 ACATAAGTGGTCGGATCAGTATCCAGAGGAGAATGAACACTTGCTTGGTAGTAACATCGT 419
Query 1221 GTCAGCACAAGGCCATACCAGTAGCCGTGGTTATGACAACAACAAGAATGTAGCAAGGTT 1280
||| ||||||||| |||||| |||||||||||||||||||| ||||||| ||||| | |
Sbjct 420 GTCTGCACAAGGCGATACCATTAGCCGTGGTTATGACAACATCAAGAATTTAGCATTGCT 479
Query 1281 TGACATTGAAGCTGGCCGCTG 1301
|||||||||||||||||||||
Sbjct 480 TGACATTGAAGCTGGCCGCTG 500
> Ahg911962 jgi|Araly1|911962|Al_scaffold_0001_2216
Length=1722
Score = 667 bits (361), Expect = 0.0
Identities = 500/567 (88%), Gaps = 10/567 (2%)
Strand=Plus/Plus
Query 243 GCGACTCTCGGGGGCAGGGTCATCAAACATTGATTTCAAAATCTTTACGGAGGAA-GACA 301
||||||||| || |||||| ||||||| ||||| |||||||||| || |||||| || |
Sbjct 1005 GCGACTCTCAGGAGCAGGGCCATCAAATGTTGATGTCAAAATCTTCACTGAGGAAGGA-A 1063
Query 302 TGAAGGAAGCAACTAATGGTTATGATGTGAGCAGAATCTTGGGTCAAGGAGGCCAATGG- 360
||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| ||
Sbjct 1064 TGAAGGAAGCAACTAATGGTTATGACGAGAGCAGAATCCTGGGTCAAGGAGGCCAA-GGA 1122
Query 361 ACAGTCTACAAAGGGATATTGCCTGACAACTCCATCGTTGCTAT-AAAGAAAACTCGGCT 419
|||||||||||||||||||| || ||||||||||| |||||||| ||| ||| |||||||
Sbjct 1123 ACAGTCTACAAAGGGATATTACCGGACAACTCCATAGTTGCTATCAAA-AAAGCTCGGCT 1181
Query 420 AGGAGACAACAACCAAGTAGAGCAGTTCATCAACGAAGTGCTCGTGCTTTCACAAATTAA 479
|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1182 CGGAGACAATAGCCAAGTAGAGCAGTTCATCAACGAAGTGCTTGTGCTTTCACAAATTAA 1241
Query 480 CCACAGGAACGTTGTCAAGCTCTTGGGTTGCTGTCTAGAGACTGAAGTTCCCTTGTTGGT 539
||| |||||||| |||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1242 CCATAGGAACGTGGTCAAGCTCTTGGGCTGCTGTTTAGAGACTGAAGTTCCCTTGTTGGT 1301
Query 540 CTATGAATTCATTACCGGTGGCTCCCTTTTCGATCACTTGCACGGTTCCATGTTTGTTTC 599
|||||| |||||| | ||||| | |||| |||||||||||||||||| ||||||| |||
Sbjct 1302 CTATGAGTTCATTGCTAGTGGCACTCTTTACGATCACTTGCACGGTTCTATGTTTGATTC 1361
Query 600 TTCTCTTACATGGGAACACCGCCTGGAG-ATAGCAATAGAAGTTGCTGGAGCTATAGCGT 658
||| ||||||||||||||||| ||| || ||||| |||||| |||||||| || | ||||
Sbjct 1362 TTCGCTTACATGGGAACACCGTCTG-AGGATAGCCATAGAAATTGCTGGAACTCTTGCGT 1420
Query 659 ATCTTCACTCCGGTGCTTCTATTCCAATCATCCATCGCGATATCAAAACTGAAAATATTC 718
|||||||||| ||||||||||||||||||||| |||||| |||| |||| |||||||
Sbjct 1421 ATCTTCACTCATCTGCTTCTATTCCAATCATCCACCGCGATGTCAAGACTGCTAATATTC 1480
Query 719 TCTTGGATGAAAACTTAACTGCAAAAGTAGCTGACTTTGGCGCTTCAAAGTTGA-AGCCA 777
|| |||||||||||||||| || ||||||||||||||||| ||||||| | ||| | |||
Sbjct 1481 TCCTGGATGAAAACTTAACGGCCAAAGTAGCTGACTTTGGTGCTTCAAGGCTGATACCCA 1540
Query 778 ATGGATAAAGAACAGCTCACCACTATG 804
||||||||||| ||||| | ||||||
Sbjct 1541 -TGGATAAAGAAGAGCTCGCAACTATG 1566
> Ahg905735 jgi|Araly1|905735|Al_scaffold_0003_2863
Length=3165
Score = 595 bits (322), Expect = 3e-169
Identities = 353/368 (96%), Gaps = 2/368 (1%)
Strand=Plus/Minus
Query 1307 GACGAAGAAGAAGATTGTTTTCGTCCAACGAGTCCAGGAAGAGGTTGTGGCATCATTGGA 1366
|||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||
Sbjct 3113 GACGAAGAAGAAGATTGTCTTCGTCCTACGAGTCCAGGAAGAGGTTGTGGCAGCATTGGA 3054
Query 1367 TTCACTGGAACAGGAAACTTATGAGCAGAACTAACCATTGTTCTTTCGTTTATCATCCCT 1426
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3053 TTCACTGGAACAGGGAACTTATGAGCAGAACTAACCATTGTTCTTTCGTTTATCATCCCT 2994
Query 1427 ACTTCTTTGCAGACTCTGTCTACTACTCCAAGGAAGTCTCTAACCACCAAGAATATTCTA 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2993 ACTTCTTTGCAGACTCTGTCTACTACTCCAAGGAAGTCTCTAACCACCAAGAATATTCTA 2934
Query 1487 AACGGATGCGCTTCTTCTTTAGCCGAGTTTCCATGGAAATACTCTGTGATTTCTTTTACA 1546
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2933 AACGGGTGCGCTTCTTCTTTAGCCGAGTTTCCGTGGAAATACTCTGTGATTTCTTTCACA 2874
Query 1547 AGTGATAACGCTACGCTCTCTTGAGCTTGTACTCTGATGATCTCTTCCTCAGCTCTTTTC 1606
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2873 AGTGATAATGCGACGCTCTCTTGAGCTTGTACTCTGATGATCTCTTCCTCAGCTCTTTTC 2814
Query 1607 AGAAACGT-TTCCATCGATTCCGAAAACCTCTGACTGTTGCTTTCTTCTGTGATTGTTGA 1665
|||||||| ||| |||||||||||||| ||||||||||||||||||||| | || |||||
Sbjct 2813 AGAAACGTGTTC-ATCGATTCCGAAAATCTCTGACTGTTGCTTTCTTCTATCATCGTTGA 2755
Query 1666 TTGGACTT 1673
||||||||
Sbjct 2754 TTGGACTT 2747
> Ahg921094 jgi|Araly1|921094|scaffold_102375.1
Length=1770
Score = 588 bits (318), Expect = 5e-167
Identities = 443/502 (88%), Gaps = 13/502 (3%)
Strand=Plus/Plus
Query 172 AAGCACCAGAAGGACACCAAGATCCAACGACAATTATTCTTTGAGAAAAATGGCGGTGGC 231
||||||| |||||| ||||| ||| ||||| | |||||||||| |||||||||| |||
Sbjct 1125 AAGCACCGGAAGGATGCCAAGCTCCGACGAC-A--ATTCTTTGAGCAAAATGGCGGCGGC 1181
Query 232 ATGTTGATAGAGCGACTCTCGGGGGCAGGGTCATCAAACATTGATTTCAAAATCTTTACG 291
||||||||| ||| | |||| | | |||||||||||||||||||||||||||||||||
Sbjct 1182 ATGTTGATACAGCAAATCTCAAGAGTAGGGTCATCAAACATTGATTTCAAAATCTTTACC 1241
Query 292 GAGGAA-GACATGAAGGAAGCAACTAATGGTTATGATGTGAGCAGAATCTTGGGTCAAGG 350
|||||| | ||||||||| ||||||||||||||||||| ||||||||| |||||||| ||
Sbjct 1242 GAGGAAAG-CATGAAGGAGGCAACTAATGGTTATGATGAGAGCAGAATATTGGGTCAGGG 1300
Query 351 AGGCCAATGGA-CAGTCTACAAAGGGATATTGCCTGACAACTCCATC-GTTGCTATAAAG 408
||||||| ||| |||||||||||||||||||||| || || |||| | ||||||||||||
Sbjct 1301 AGGCCAA-GGAACAGTCTACAAAGGGATATTGCCAGATAATTCCA-CAGTTGCTATAAAG 1358
Query 409 AAAACTCGGCTAGGAGACAACAACCAAGTAGAGCAGTTCATCAACGAAGTGCTCGTGCTT 468
||| ||||||| |||||| | ||||||||| || ||| || | ||| || ||||||||
Sbjct 1359 AAAGCTCGGCTTGGAGACCGTAGCCAAGTAGACCAATTCGTCCATGAAATGATCGTGCTT 1418
Query 469 TCACAAATTAACCACAGGAACGTTGTCAAGCTCTTGGGTTGCTGTCTAGAGACTGAAGTT 528
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 1419 TCACAAATTAACCACAGGAATGTGGTCAAGCTCTTGGGTTGCTGTCTAGAGACTGAA-TT 1477
Query 529 CCC-TTGTTGGTCTATGAATTCATTACCGGTGGCTCCCTTTTCGATCACTTGCACGGTTC 587
||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1478 CCCCTTGTTGGTCTATGAATTCATTACCAGTGGCACCCTTTTCGATCACTTGCACGGTTC 1537
Query 588 CATGTTTGTTTCTTCTCTTACATGGGAACACCGCCTGGAG-ATAGCAATAGAAGTTGCTG 646
|||||||| ||||||||||||||||||||||||||| || ||||| |||||||| ||||
Sbjct 1538 CATGTTTGCTTCTTCTCTTACATGGGAACACCGCCTA-AGGATAGCGATAGAAGTCGCTG 1596
Query 647 GAGCTATAGCGTATCTTCACTC 668
|| || |||| |||||||||||
Sbjct 1597 GAACTCTAGCATATCTTCACTC 1618
Score = 183 bits (99), Expect = 3e-45
Identities = 117/126 (93%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1181 ATCCTGAAGAGAATGTACACTTGCTTGGTAGTAACATCGTGTCAGCACAAGGCCATACCA 1240
||||||| ||||||| ||||||||| ||| || |||||||||| ||||||||||||||||
Sbjct 1624 ATCCTGAGGAGAATGAACACTTGCTAGGTGGTCACATCGTGTCTGCACAAGGCCATACCA 1683
Query 1241 GTAGCCGTGGTTATGACAACAACAAGAATGTAGCAAGGTTTGACATTGAAGCTGGCCGCT 1300
|||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 1684 GTAGCCGTGGTTATGACAGCATCAAGAATGTAGCAAGCTTTGACATTGAAGCTGGCCGCT 1743
Query 1301 GATAAA 1306
||||||
Sbjct 1744 GATAAA 1749
> Ahg905733 jgi|Araly1|905733|Al_scaffold_0003_2861
Length=810
Score = 492 bits (266), Expect = 4e-138
Identities = 323/349 (93%), Gaps = 10/349 (3%)
Strand=Plus/Plus
Query 113 CAAACACCACCAACATTTTGAGCCTCGTGCGTAGCATTAGCTATATAAAAAATA-TAAGG 171
||||||||| || |||||||||| | |||||||||||||||||||||||||| | ||| |
Sbjct 74 CAAACACCATCAGCATTTTGAGCATTGTGCGTAGCATTAGCTATATAAAAAA-AGTAATG 132
Query 172 AAGCACCAGAAGGACACCAAGATCCAACGACAATTATTCTTTGAGAAAAATGGCGGTGGC 231
||||||||||||||||||||| ||||||| || |||||||||||||||||||||| | |
Sbjct 133 AAGCACCAGAAGGACACCAAGCTCCAACG--AA-TATTCTTTGAGAAAAATGGCGGCGAC 189
Query 232 ATGTTGATAGAGCGACTCTCGGGGGCAGGGTCATCAAACATTGATTTCAAAATCTTTACG 291
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 190 ATGTTGATAGAGCGACTCTCGGAAGCAGGGTCATCAAACATTGATGTCAAAATCTTTACG 249
Query 292 GAGGAAGACATGAAGGAAGCAACTAATGGTTATGATGTGAGCAGAATCTTGGGTCA--A- 348
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 250 GAGGATGACATGAAGGAAGCAACTAATGGTTATGATGAGAGCAGAATCTTGGGTCATCAA 309
Query 349 GGAGGCCAATGGACAGTCTACAAAGGGATATTGCCTGACAACTCCATCGTTGCTA-TAAA 407
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 310 GGAGGCCAAGGGACAGTCTACAAAGGGATATTGCCAGACAACTCCATCGTTGC-AGTAAA 368
Query 408 GAAAACTCGGCTAGGAGACAACAACCAAGTAGAGCAGTTCATCAACGAA 456
|||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 369 GAAAACTCGGCTAGGAGACAACAATCAAGTAGAGCAGTTCATCAACGAA 417
Score = 398 bits (215), Expect = 9e-110
Identities = 263/285 (92%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 529 CCCTTGTTGGTCTATGAATTCATTACCGGTGGCTCCCTTTTCGATCACTTGCACGGTT-C 587
||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |
Sbjct 420 CCCTTGTTGGTCTATGAATTCATTACCAGTAGCACCCTTTTCGATCACTTGCACGGTTCC 479
Query 588 ---CATGTTTGTTTCTTCTCTTACATGGGAACACCGCCTGGAGATAGCAATAGAAGTTGC 644
|||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 480 ATGCATGTTTGCTTCTTCTCTTACATGGGAACACCGCCTGAAGATAGCAATAGAAGTCGC 539
Query 645 TGGAGCTATAGCGTATCTTCACTCCGGTGCTTCTATTCCAATCATCCATCGCGATATCAA 704
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 540 TGGAGCTATAGCATATCTTCACTCCGCTGCTTCTATTCCAATCATCCATCGCGATGTCAA 599
Query 705 AACTGAAAATATTCTCTTGGATGAAAACTTAACTGCAAAAGTAGCTGACTTTGGCGCTTC 764
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 600 AACTGAAAATATTCTCCTGGATGAAAACTTAACTGCAAAAATAGCTGACTTTGGCGGTTC 659
Query 765 AAAGTTGAAGCCAATGGATAAAGAACAGCTCACCA-CTATG-GTG 807
|||||||| ||||||||||||||| ||| |||| | ||||| |||
Sbjct 660 AAAGTTGATGCCAATGGATAAAGAGCAGTTCAC-AGCTATGAGTG 703
Score = 163 bits (88), Expect = 3e-39
Identities = 100/106 (94%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 1197 ACACTTGCTTGGTAGTAACATCGTGTCAGCACAAGGCCATACCAGTAGCCGTGGTTATGA 1256
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 705 ACACTTGCTTGGTAGTAACATCGTGTTTGCACAAGGCCATACCAGTAGCCGTGGTTATGA 764
Query 1257 CAACAACAAGAATGTAGCAAGGTTTGACATTGAAGCTGGCCGCTGA 1302
|| || |||||||||||||| |||||||||||||||||| ||||||
Sbjct 765 CAGCATCAAGAATGTAGCAACGTTTGACATTGAAGCTGGTCGCTGA 810
> Ahg895839 jgi|Araly1|895839|Al_scaffold_0006_3835
Length=1668
Score = 111 bits (60), Expect = 1e-23
Identities = 260/350 (74%), Gaps = 39/350 (11%)
Strand=Plus/Plus
Query 433 CAAGTAGAGCAGTTCATCAACGAAGTGCTCGTGCTTTCACAAATTAAC-CACAGGAACGT 491
||||||| | ||||||||||||||||| || | ||||||| || | || | | || ||
Sbjct 1222 CAAGTAGCGGAGTTCATCAACGAAGTGATCATCCTTTCACGAA-TCACTGATACAAAAGT 1280
Query 492 TGTCAAGCTC-TTGGGTTGCTGTCTAGAGACTGAAGTTCCCTTGT-TGGTCTATGAATTC 549
|| |||||| || ||||||||||||||||||||||||||||| | |||||||||| ||
Sbjct 1281 AGTGAAGCTCATT-GGTTGCTGTCTAGAGACTGAAGTTCCCTT-TCTGGTCTATGAGTTT 1338
Query 550 AT-TACCGGTGGCTCCCTTTTC-GATCA-CTTGCACGGTTCCATGTTTG-TTTCTTCTCT 605
| | |||||||| |||| | | || || |||||| ||||| | | || ||| || |||
Sbjct 1339 GTGT-CCGGTGGCACCCTCT-CAGA-CAACTTGCATGGTTCTAAATCTGGTTTTTT-TCT 1394
Query 606 TACA-TGGGAAC-ACCGCCTGGAG-ATAGCAA-TAGAAGTT-GCTGGAGCTATAGCGT-A 659
| || ||| || | || || || ||||||| | || | | ||| | || |||| | |
Sbjct 1395 T-CAATGG-AAGGATCGGTTG-AGGATAGCAACT-GA-GATCGCTACAACTTTAGCATCA 1449
Query 660 TCTTCACTCCGGTGCTTCTATTCC-AATCATCCATCGCGATATCAAAACTGAA-AATATT 717
|||||||| | || | | ||| ||| || || || ||| |||| | | |||||
Sbjct 1450 -CTTCACTCAG---CT-CAAGTCCCAATAATTCACCGTGATGTCAAGCCC-ACTAATAT- 1502
Query 718 CTC-TTGGATGAA-AACT-TAACTGCAAAAGTAGCTGACTTTGGCGCTTC 764
|| ||||||||| |||| | ||| |||||||||||| ||||| |||||
Sbjct 1503 CTTATTGGATGAAGAACTCT--CTGTAAAAGTAGCTGATTTTGGGGCTTC 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5