BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25640.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936241 jgi|Araly1|936241|scaffold_500432.1 1347 0.0
Ahg896412 jgi|Araly1|896412|Al_scaffold_0005_378 309 3e-83
Ahg902141 jgi|Araly1|902141|Al_scaffold_0004_2791 54.7 1e-06
> Ahg936241 jgi|Araly1|936241|scaffold_500432.1
Length=844
Score = 1347 bits (729), Expect = 0.0
Identities = 811/850 (95%), Gaps = 7/850 (1%)
Strand=Plus/Plus
Query 35 TTTTGTATTTTCATTTAAAGAGATGAAATCAATCTTAGCCAACACTTCTCTCGACTCTTC 94
|||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1 TTTTGTATATTCATTTAAAGAGATGAAGTCAATCTTAGCCAACACTTCTCTCGATTCTTC 60
Query 95 ATTCTCTCTTTCTAAACGTTACTTCAATTGgaagaagaagaaagttcaagaagacgacga 154
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTCTCTCTCTCAAAACGTTACTTCAATTGGAAGAAGAAGAAAGTTCAAGAAGACGACGA 120
Query 155 cgaagaagaggaagaagaagaagacgaTTACAACCACAACG-AGAAAAAAGTCTTGACCC 213
||| |||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||
Sbjct 121 CGAGGAAGAGGAAGAAGAAGAAGACGATTACAACAACAACGAAGAGAAAA-TCTTGACCC 179
Query 214 GTTTCAATTTCTCCTCTGACCCGACCCGACCGGATCAGTTCAATGCCCAACAGATAATGA 273
||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 180 GTTTCAATTTCTCCTCTGACCCGACCCGACCGGATCAATTCAATATTCAACACATAATGA 239
Query 274 AGaaaaaaaagaaaaaGACTCTCGAAAAGATCCGTTACGCTCTCGGGTTCTCTAACTCGG 333
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAAAAAAAAGAAAAAGACTATCGAAAAGATCCGTTACGCTCTCGGGTTCTCTAACTCGG 299
Query 334 GTCTGGGTTTCCGGGTCGTGGGTACGTTATTCGGTAACCGTCGTGGACACGTGTACTTCG 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTCTGGGTTTCCGGGTCGTGGGTACGTTATTCGGTAACCGTCGTGGACACGTGTACTTCG 359
Query 394 CCGTACAAGATGACCCGACTCGTTTACCTGCGGTGTTGATCCAGTTACCGACTCCAACGA 453
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 360 CCGTACAAGATGACCCGACCCGTTTACCCGCGGTGTTGATCCAGTTACCAACTCCAACGA 419
Query 454 GCGTTCTTGTCCGTGAAATGGCTTCAGGGCTAGTGAGAATCGCGCTCGAAACGGCTGCGT 513
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCGTTCTTGTCCGTGAGATGGCTTCAGGGCTAGTGAGAATCGCGCTCGAAACGGCTGCGT 479
Query 514 ATAAGACAGATTCAAAGAAGAAGCTTTTAGAAGAGTCCACGTGGAGAACGTATTGTAACG 573
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTAAGACGGATTCGAAGAAGAAGCTTTTAGAAGAGTCCACGTGGAGAACGTATTGTAACG 539
Query 574 GTAAAAAATGTGGTTACGCGGCGAGGAAAGAGTGTGGAGAAGCGGAGTGGAAGGTGTTGA 633
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTAAAAAATGTGGATACGCGGCGAGGAAAGAGTGTGGAGAAGCGGAGTGGAAGGTGTTGA 599
Query 634 AGGCGGTTGGGCCTATAACAATGGGTGCTGGAGTTTTACCGGCGACTACGACGACGGTGG 693
||||||||||||| |||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 600 AGGCGGTTGGGCCCATAACAATGGGTGCTGGAGTTTTACCGGCGGC-A--ACGACGGTGG 656
Query 694 ATGAAGAAGGGAATGGAGCGGTTGGGTCCGAAAAAGGTGAACTCATGTATATGAGAGCCC 753
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 657 ATGAAGAAGGGAATGGAGCGGTTGGGTCCGAAAAAGGTGAGCTCATGTATATGAGAGCCC 716
Query 754 GGTTCGAGCGGGTTGTCGGGTCGAGAGACTCGGAGGCGTTTTACATGATGAACCCTGATG 813
|||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||
Sbjct 717 GGTTCGAGCGGGTTATCGGGTCGAAAGACTCGGAGGCGTTTTATATGATGAATCCTGATG 776
Query 814 TGTCAAGTGGTGGACCTGAGCTTAGTGTGTATTTTCTAAGGGTTTAATGCGaaaaaaaGA 873
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 777 TGTCAAGTGGTGGACCTGAGCTTAGTGTGTATTTTCTAAGGGTTTAAGGGGAAAAT--GA 834
Query 874 TAAGATTAGT 883
||||||||||
Sbjct 835 TAAGATTAGT 844
> Ahg896412 jgi|Araly1|896412|Al_scaffold_0005_378
Length=267
Score = 309 bits (167), Expect = 3e-83
Identities = 195/208 (94%), Gaps = 3/208 (1%)
Strand=Plus/Plus
Query 653 AATGGGTGCTGGAGTTTTACCGGCGACTACGACGACGGTGGATGAAGAAGGGAATGGAGC 712
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 63 AATGGGTGCTGGAGTTTTACCGGCGGC-A--ACGACGGTGGATGAAGAAGGGAATGGAGC 119
Query 713 GGTTGGGTCCGAAAAAGGTGAACTCATGTATATGAGAGCCCGGTTCGAGCGGGTTGTCGG 772
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 120 GGTTGGGTCCGGAAAAGGTGAGCTCATGTATATGAGAGCCCGGTTCGAGCGGGTTATCGG 179
Query 773 GTCGAGAGACTCGGAGGCGTTTTACATGATGAACCCTGATGTGTCAAGTGGTGGACCTGA 832
||||||||||| |||||||||||| || ||||| |||||||||||||||||||||||| |
Sbjct 180 GTCGAGAGACTTGGAGGCGTTTTATATCATGAATCCTGATGTGTCAAGTGGTGGACCTAA 239
Query 833 GCTTAGTGTGTATTTTCTAAGGGTTTAA 860
|| |||||||||||||||||||||||||
Sbjct 240 GCATAGTGTGTATTTTCTAAGGGTTTAA 267
> Ahg902141 jgi|Araly1|902141|Al_scaffold_0004_2791
Length=765
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 780 GACTCGGAGGCGTTTTACATGATGAACCC 808
|||||||||||||||||||||||||||||
Sbjct 688 GACTCGGAGGCGTTTTACATGATGAACCC 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5