BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G25660.1
Length=1991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484328 jgi|Araly1|484328|fgenesh2_kg.5__320__AT3G25660.1 2850 0.0
> Ahg484328 jgi|Araly1|484328|fgenesh2_kg.5__320__AT3G25660.1
Length=1811
Score = 2850 bits (1543), Expect = 0.0
Identities = 1703/1779 (96%), Gaps = 15/1779 (1%)
Strand=Plus/Plus
Query 7 TCTCCTTCCTCGAACA---GTCGCCGAAACATTTTCGCCGGCGTTACACCGGAGAATTCA 63
||||||||||| |||| | ||||||||||| ||| |||||||||||||||||||||||
Sbjct 1 TCTCCTTCCTCAAACAGCCGCCGCCGAAACATCTTCTCCGGCGTTACACCGGAGAATTCA 60
Query 64 TCCTTCTTTGTCTTATTACTCTACTACCCAATTTC-AGTTTAAACTCACTATCTTCCCAA 122
||||||||| ||||| || ||| ||||||||||| | ||||| |||| ||||| |||||
Sbjct 61 TCCTTCTTTAACTTATAACCCTAGTACCCAATTTCAATTTTAACCTCAGTATCTCCCCAA 120
Query 123 TTTGATGATTCAGTGATTCAAATTCGAAACTTCAAGCAATGTTATCGACATTGCAACCGC 182
|||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||
Sbjct 121 TTTGATGATTCAGTGATTCAAAATCAAAACTTGAAGCAATGTTATCGACATTGCAACCGC 180
Query 183 CGCGTTCTCTATCACTCCTCCCTCTACGCCG-GTTCCAAATATCTAAAACCATCGTCTCC 241
||||||||||||| ||||||||||| ||||| ||| ||| || |||||||| || ||
Sbjct 181 CGCGTTCTCTATCTCTCCTCCCTCTCCGCCGATTTCGAAA-CTCCAAAACCATTGTATCT 239
Query 242 GCAGCTTCTTCGAAGACCATCGACACTTCCGTTATCTCTCCACCACAATCTCAAATTCTC 301
||||||||||| | | |||| | |||||||||||||| ||||||||||| ||||||
Sbjct 240 GCAGCTTCTTC---G---A-CGAC-C-TCCGTTATCTCTCCTCCACAATCTCAGATTCTC 290
Query 302 ACCACTCGTCGTTCACTCCTCTCCGGCGAAACCACAGCTGTCGAAATCGCAAAATCTTAC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ACCACTCGTCGTTCACTCCTCTCCGGCGAAACCACAGCTGTCGAAATCGCAAAATCTTAC 350
Query 362 CTTTCTCGTATCCGTCTCACTGAACCTCAGCTCAAATGCTTCCTTCACGTATCGGAGAAT 421
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 351 CTTTCTCGTATTCGTCTCACTGAACCTCAGCTCAAATGTTTCCTTCACGTATCGGAGAAT 410
Query 422 GTTCTCAAAGATGCTCAAGAGATTGATCAACGAATCGCTAAAGGTGAGGAATTGGGTCCT 481
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 411 GTTCTCAAAGATGCTCAAGAGATTGATCAACGAATCGCTAAAGGTGAAGAATTGGGTCCT 470
Query 482 CTCGCCGGAGTTTTGATCGGCGTTAAGGATAATATATGTACTCAAGGTATGCCTTCTACT 541
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 471 CTCGCCGGAGTTTTGATCGGCGTTAAGGATAATATTTGTACTCAAGGTATGCCTTCTACC 530
Query 542 GCTGCTTCGAGAATCTTAGAGCATTATCGTCCACCGTTCGATGCGACGGCGGTTAAGAAG 601
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 531 GCCGCTTCGAGAATCTTGGAGCATTATCGTCCTCCGTTCGATGCTACGGCGGTTAAGAAG 590
Query 602 ATTAAAGAGTTGGGTGGGATTGTTGTTGGTAAGACTAATATGGATGAGTTTGGAATGGGA 661
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 591 ATTAAAGAGTTGGGTGGGATTGTTGTTGGTAAGACTAATATGGATGAATTTGGAATGGGA 650
Query 662 AGTACCACTGAAGCTTCTGCTTTTCAGGTAACTGCGAATCCGTGGGATTTGAGTCGTGTA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGTACCACTGAAGCTTCTGCTTTTCAGGTAACTGCGAATCCGTGGGATTTGAGTCGTGTA 710
Query 722 CCGGGAGGTTCATCGGGAGGATCAGCAGCAGCTGTTGCAGCAAGGCAGTGTATGGTGTCA 781
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 711 CCGGGAGGTTCATCGGGAGGATCAGCAGCAGCTGTTGCAGCAAGACAGTGTGTGGTGTCA 770
Query 782 CTTGGTAGTGATACTGGTGGAAGTGTGAGACAGCCAGCTTCGTTTTGTGGTGTTGTAGGT 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 771 CTTGGTAGTGATACTGGTGGAAGTGTGAGACAGCCAGCTTCGTTTTGTGGTGTTGTTGGT 830
Query 842 CTTAAGCCGACTTATGGGCGTGTTTCTAGGTTTGGGCTTATGGCTTATGCGTCTTCGTTG 901
||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 831 TTTAAGCCAACTTATGGGCGTGTTTCTAGGTTTGGACTTATGGCTTATGCATCTTCGTTG 890
Query 902 GATGTGATTGGGTGTTTTGGGTCTACGGTTGCTGATGCTGGGATGCTTCTTCATGCTATT 961
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 891 GATGTGATTGGGTGTTTTGGTTCAACGGTTGCTGATGCTGGGATGCTTCTTCATGCTATT 950
Query 962 TCGGGGTATGATAGGTTTGACTCCACGAGTAGCAAACAAGATGTGCCTGAGTTCCAGTCT 1021
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 951 TCTGGGTATGATAGGTTTGACTCCACGAGTAGCAAACAAGATGTGCCTGAGTTCCAATCT 1010
Query 1022 CAGTTTCTATCTGTGGATCATTTTGAGTCTAAACCATTGAATGGAGTGAAAGTTGGTATA 1081
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CAGTTTCTATCTATGGATCATTTTGAGTCTAAACCATTGAATGGAGTGAAAGTTGGTATA 1070
Query 1082 ATTCGCGAGACACTTGAAGACGGTGTTGATTCTGGAGTGAGATCTGCTACTCAGGAAGCT 1141
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 ATTCGCGAGACACTCGAAGACGGTGTTGATTCTGGAGTGAGATCTGCTACTCAGGAAGCT 1130
Query 1142 GCGTCTCACTTAGAAGCATTGGGTTGTATATTGACAGAGGTCTCCCTTCCTTCATTCTCT 1201
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1131 GCGTCTCACTTAGAAGCATTGGGTTGTGTATTGACAGAGGTCTCCCTTCCTTCATTCTCT 1190
Query 1202 CTTGGACTACCAGCTTACTACGTTATTGCCTCATCGGAGTCATCTTCGAATTTATCACGT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CTTGGACTACCAGCTTACTACGTTATTGCCTCATCGGAGTCATCTTCGAATTTATCACGT 1250
Query 1262 TATGATGGTGTCAGATATGGTAATCAAGTTATGGCTGAAGAACTCAATAAGCTGTATGAA 1321
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1251 TATGATGGTGTCAGATATGGAAATCAAGTTGTGGCTGAAGAACTCAATAAGCTGTATGAA 1310
Query 1322 TGTTCCCGTGGAGAAGGATTTGGAGGAGAGGTGAAAATGAGAATTTTAATGGGGACATAT 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TGTTCCCGTGGAGAAGGATTTGGAGGAGAGGTGAAAATGAGAATTTTAATGGGGACATAT 1370
Query 1382 GCACTTTCTGCGGGTTACTACGATGCTTACTACAAGCGAGCTCAACAGGTGAGGACACTA 1441
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1371 GCACTCTCTGCGGGTTACTACGATGCTTACTACAAGCGAGCTCAACAGGTGAGAACACTA 1430
Query 1442 ATTCGAAAAGACTTCAAAGCAGCGTTAGAACAGAACGATATCCTTATTTCTCCGGCAGCT 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 ATTCGAAAAGACTTCAAAGCAGCGTTAGAACAGAACGATATCCTTATTTCTCCGGCAGCT 1490
Query 1502 CCATCTGCTGCATACAAGATTGGTGAAAAGAAAGATGATCCACTGGCAATGTATGCTGGA 1561
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1491 CCATCTGCTGCATACAAGATTGGTGAAAAGAAAGATGACCCACTGGCAATGTATGCTGGA 1550
Query 1562 GACATTATGACGGTCAATGTGAATCTTGCCGGACTTCCTGCAATGGTATTACCTTGTGGA 1621
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1551 GACATTATGACGGTCAATGTGAATCTTGCAGGACTTCCTGCAATGGTATTACCGTGTGGA 1610
Query 1622 TTAGTCGAAGGTGGTCCCTCGGGTCTTCCTGTTGGTCTTCAAATGATCGGAGCAGCGTTT 1681
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1611 TTAGTCGAAGGTGGTCCCTCGGGTCTTCCTGTTGGTCTTCAAATGATCGGTGCAGCGTTT 1670
Query 1682 GATGAGGAGAAATTGCTGAAAGTGGGTCACATATTTGAGCAGACTCTTAAAGGATCGAGC 1741
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1671 GATGAGGAGAAATTGCTGAAAGTGGGTCACATATTTGAGCAGACTCTTAAAGGATCAAGC 1730
Query 1742 TTTGTTCCTCCATTGTTAGCCAATGTAGCCTAACCATGT 1780
||||||||||||||||||||||||||| |||||||||||
Sbjct 1731 TTTGTTCCTCCATTGTTAGCCAATGTACCCTAACCATGT 1769
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1854 TTCAATTCTTTTATAATATAAATGTAGAT 1882
|||||||||||||||||||||||||||||
Sbjct 1783 TTCAATTCTTTTATAATATAAATGTAGAT 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74847331425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5