BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25910.1 Length=1515 Score E Sequences producing significant alignments: (Bits) Value Ahg936283 jgi|Araly1|936283|scaffold_500474.1 1493 0.0 > Ahg936283 jgi|Araly1|936283|scaffold_500474.1 Length=1174 Score = 1493 bits (808), Expect = 0.0 Identities = 1041/1150 (91%), Gaps = 30/1150 (3%) Strand=Plus/Plus Query 202 TTGTTACTAGTTCCAAAACATGCCGAAAGAGAGGAAAGAACGGTCCGTATCTCTTGATAA 261 ||||| |||||| | ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2 TTGTTGTTAGTTCTAGAACATGCCGAAAGAGAGGAAAGAACGGTCGGTATCTCTTGATAA 61 Query 262 GTATAAACGATCGCCACTGTGTTGTGAGGCAAGCCT-TGCTTTGAAGCCGAGTGAGAAAC 320 ||||| |||||||||||||||| ||||| |||| || ||||||||||||||||||||||| Sbjct 62 GTATAGACGATCGCCACTGTGTAGTGAGTCAAG-CTGTGCTTTGAAGCCGAGTGAGAAAC 120 Query 321 AAGTTAAGGAATGGGAAGAGGCTCGTTGTCCTGTTTGTATGGAACATCCTCACAATGGGA 380 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 121 AAGTTAAGGAATGGGAAGAGGCTCGTTGTCCCGTTTGTATGGAACATCCTCACAATGGGA 180 Query 381 TTCTTCTCATTTGTTCTTCTTATGAAAATGGTTGTCGACCTTACATGTGCGACACTAGCC 440 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 TTCTTCTCATTTGTTCTTCTTATGAAAACGGTTGTCGACCTTACATGTGCGACACTAGCC 240 Query 441 ATCGGCATTCTAACTGTTTCGATCAGTTCCGCAAAGCTTCTAAAGAGAAACCTTCTTTGT 500 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 ATCGGCATTCTAACTGTTTCGATCAGTTCCGCAAAGCTTCTAAAGAGAAACCGTCTTTGT 300 Query 501 CTTTACTTCGTGAGGAAGAGGAAAGTAATGAACCAACTGAGATGGAAGATGTGGATTCAG 560 ||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| | Sbjct 301 CTTTACTTCATGAGGAAGAGGAAAGTAATGAACCAACTGAGATGGAAGATGTAGCTTCTG 360 Query 561 ACTCAACTGCTGTAAATCTATTAGGAGAAGCTGCATCTGAGATAACAGTTGTG-GATTTA 619 |||||||||||||||||||| ||||||||||||||||||| |||||| |||| | |||| Sbjct 361 ACTCAACTGCTGTAAATCTAAGAGGAGAAGCTGCATCTGAGTTAACAGATGTGAG-TTTA 419 Query 620 AGTGATGGTgagagaggagaagaagaagtagaagaaga-agaagaagaagtagtagtaga 678 || || |||||||||||||||||||||| ||||| || ||| || |||| || ||||| Sbjct 420 AGAGAAGGTGAGAGAGGAGAAGAAGAAGAAGAAGGTGAGAGAGGA-GAAGAAGAAGTAGT 478 Query 679 agaagaagaagaaggaattgtaacaacagaagaagatcaagaaaaaaacaaaccacaaaa 738 ||||||||||| | ||||||| ||||||| ||||| ||||||||||||||||| | || Sbjct 479 AGAAGAAGAAG--G-AATTGTAGCAACAGAGGAAGACCAAGAAAAAAACAAACCGCCGAA 535 Query 739 gCTTACTTGTCCGTTATGTCGTGGACATATAAAAGAATGGGTAGTTGTTAAAGCAGCTCG 798 ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 536 GCTTACTTGCCCGTTATGCCGTGGACATATAAAAGAATGGGTAGTTGTTGAAGCAGCTCG 595 Query 799 ATGTTTCATGAACTCAAAACATAGAAGCTGTTCTTGTGAGACTTGTGATTTCAGTGGAAG 858 || |||||||||||||||||||||||||||||| | ||||||||||||||||| |||| Sbjct 596 ATATTTCATGAACTCAAAACATAGAAGCTGTTCGTCCGAGACTTGTGATTTCAGCGGAAC 655 Query 859 CTATTCCGATCTGAGAAAGCACGCAAGGCTTCTACATCCAGGAGTTAGGCCATCAGAAGC 918 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 656 CTATTCCGATTTGAGAAAGCACGCAAGGCTTCTGCATCCAGGAGTTAGGCCATCAGAAGC 715 Query 919 AGATCCAGAGAGACAGAGAAGCTGGAGGAGGCTAGAAAGGCAGAGCGATTTAGGGGATTT 978 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 716 AGATCCAGAGAGACAGAGAAGCTGGAGGAGGCTAGAAAGGCAGAGAGATTTAGGGGATTT 775 Query 979 ACTTAGCACACTCCAAT-CTTCTTTTGGAGGAGATGAAATAAGTAACGATGATGGGTTTC 1037 | ||||||||||| ||| |||||||||||||||| |||| ||||||||| ||||| ||| Sbjct 776 AATTAGCACACTC-AATTCTTCTTTTGGAGGAGAAGAAAGAAGTAACGACAATGGGATTC 834 Query 1038 TATTTGCTGATACTCGCTTGCTTACAGTG-TACTTTCTCATCCGCGTGTTTAGACCAGAA 1096 |||||| || || |||||||||||||| | |||||||||||||||||||||||| || Sbjct 835 TATTTGATGGTA---GCTTGCTTACAGTGAT-CTTTCTCATCCGCGTGTTTAGACCTGAG 890 Query 1097 TCGAGTGGCTCAAGGAGTAGTAG------CTGGTCTGGTACATCTAGAGCTAGGACACAT 1150 ||||||||||||||||||||||| |||||||||| |||||||||||||| |||| Sbjct 891 TCGAGTGGCTCAAGGAGTAGTAGTAGTAGCTGGTCTGGTGCATCTAGAGCTAGGTCACAG 950 Query 1151 ACAAGTGGGAGAAGAAGATCTTCA-AGACCTGCAAGTCTTTGGGGAGAGAGCTATGAAGG 1209 | | ||||||||||||| | || ||| || || | ||||||||||||||||||||||| Sbjct 951 ATAGGTGGGAGAAGAAGGCCA-CATAGATCTCCAGGGCTTTGGGGAGAGAGCTATGAAGG 1009 Query 1210 TAATACAGGAACATCACCTAGAGATGAGGAGAATAAT---CAATCTTCTGATGAACAAGT 1266 |||||||||||||||| |||||||||||||||||||| || |||||||||||||||| Sbjct 1010 TAATACAGGAACATCATCTAGAGATGAGGAGAATAATATTCAGTCTTCTGATGAACAAGA 1069 Query 1267 GTCTGGAACTCGGAGACG---TCGTTCTAGAAGAAGAACTGTCATTGATGATGATGATGA 1323 ||||| |||||||||||| ||||||||| |||||| || ||||||||||||| ||||| Sbjct 1070 GTCTGTAACTCGGAGACGACGTCGTTCTAGGAGAAGAGCTATCATTGATGATGACGATGA 1129 Query 1324 AGAAGAAGAA 1333 || || ||| Sbjct 1130 TGATGATGAA 1139 Score = 63.9 bits (34), Expect = 3e-09 Identities = 34/34 (100%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 1310 GATGATGATGATGAAGAAGAAGAACCGTGATGCT 1343 |||||||||||||||||||||||||||||||||| Sbjct 1125 GATGATGATGATGAAGAAGAAGAACCGTGATGCT 1158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56716374805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5