BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G25920.1 Length=1124 Score E Sequences producing significant alignments: (Bits) Value Ahg484358 jgi|Araly1|484358|fgenesh2_kg.5__350__AT3G25920.1 1389 0.0 > Ahg484358 jgi|Araly1|484358|fgenesh2_kg.5__350__AT3G25920.1 Length=972 Score = 1389 bits (752), Expect = 0.0 Identities = 855/904 (95%), Gaps = 9/904 (1%) Strand=Plus/Plus Query 35 CCTTATCCTTGAAGCTTTGTTTCATCTGTTGTTCCCTGTGACCATGGCTACTCCACTCTC 94 |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || Sbjct 19 CCTTATCCTTGAAGCTTT-TTTCATCTGTTGTTCCCTGTGACCATGGCTGCTCCACTGTC 77 Query 95 AATCTCATCAAATCCTCTCACCTCCCGCCATTGTTACCGTCTCCACTTAT-CTTCTACTT 153 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 78 AATCTCATCAAATCCTCTCACCTCCCGCCATTGTTACCGTCTCCACTT-TCCTTCTACTT 136 Query 154 CATTCAAGGGAAATGTAAGTGTTTTGGGGGCAAACCCAAGTCAGATTCTATCTCTGAAAC 213 | ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| Sbjct 137 CGTTCAAGGGAAATGTAAGCGTTTTGGGAGCAAACCCAAGTCAGATTCTGTCTCTGAAAC 196 Query 214 TCAACCAAACCCTTAAAACGAGAAACCAACAGCAATTTGCGAGACCCCTTGTTGTGGTTA 273 ||||||||| |||||||||||||| ||||| |||| || |||||| ||||||||||| | Sbjct 197 TCAACCAAAAGCTTAAAACGAGAAATCAACAACAATCTGTGAGACCACTTGTTGTGGTCA 256 Query 274 GCCAAACGGCGGCTACGTCGTCGGCAGTTGTAGCTCCGGAGAGATTCCGTTTGGATAATC 333 ||||| | |||| || |||||| ||||||||||||||||||||||||||||||||||| Sbjct 257 GCCAAGCAGCGG---CGACGTCGGAAGTTGTAGCTCCGGAGAGATTCCGTTTGGATAATC 313 Query 334 TTGGACCACAGCCAGGTTCGAGGAAGAAGCAGAAGAGAAAAGGTAGAGGTATCTCTGCAG 393 |||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||| Sbjct 314 TTGGACCACAACCAGGTTCGAGAAAGAGGCAGAAGAGAAAAGGTAGAGGTATATCTGCAG 373 Query 394 GACAAGGAGCAAGTTGTGGTTTTGGTATGAGAGGTCAGAAATCAAGATCGGGTCCTGGGA 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 GACAAGGAGCAAGTTGTGGTTTTGGTATGAGAGGTCAGAAATCAAGATCGGGTCCTGGGA 433 Query 454 TTATGAGAGGCTTTGAAGGTGGTCAAACTGCTCTTTATCGTCGTCTTCCCAAACTTAGAG 513 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 434 TTATGAGAGGCTTTGAAGGAGGTCAAACTGCTCTTTATCGTCGTCTTCCCAAACTTAGAG 493 Query 514 GAATCGCTGGAGGTATGCGTTCAGGATTACCTAAATACTTACCGGTTAATATCAAAGACA 573 ||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||| Sbjct 494 GAATCGCCGGAGGTATGCGTTCAGGATTACCCAAATACTTACCGGTTAATCTTAAAGACA 553 Query 574 TAGAAACAGCTGGGTTTCAAGAGGGAGATGAAGTGTCATTGGAGACATTGAAGCAAAAGG 633 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 554 TCGAAACAGCTGGGTTTCAGGAGGGAGATGAAGTGTCATTGGAGACATTGAAGCAAAAGG 613 Query 634 GTTTGATTAATCCTTCAGGGAGAGAAAGGAAACTCCCTCTTAAGATTCTGGGTACAGGAG 693 ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 614 GTTTGATCAATCCTTCAGGGAGGGAAAGGAAACTCCCTCTAAAGATTCTGGGTACCGGAG 673 Query 694 AACTAAGCATGAAGCTCACCTTCAAAGCTCGTGCCTTCTCAACACAAGCAAAAGAGAAGC 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 674 AACTAAGCATGAAGCTCACCTTCAAAGCTCGTGCCTTCTCAACACAAGCAAAAGAGAAGC 733 Query 754 TTGAAGCTTCAGGTTGTACACTCACTGTGTTGCCGGGAAGAAAGAAATGGGTTAAGCCAT 813 ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 734 TTGAAGCTTCAGGATGTACACTCACTGTTTTGCCCGGAAGAAAGAAATGGGTTAAGCCAT 793 Query 814 CTGTTGCAAAGAACCAAGCACGAGCAGATGAATACTTTGCCAAGAAGAGAGCTGCAGCAG 873 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 794 CGGTTGCAAAGAACCAAGCACGAGCAGACGAATACTTTGCCAAGAAGAGAGCTGCAGCAG 853 Query 874 CAGAAGCAGCAACTTCAGAGCCAGCAGCCTCTGCTTAAATTACTTCAGTTTCAAGCTCTT 933 |||||||| | |||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 854 CAGAAGCA--A-CTTCAGAGCCAGCAGCTTCTGCTTAAATTACTTCATTTTCAAGCTCTT 910 Query 934 TTTA 937 |||| Sbjct 911 TTTA 914 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41897085783 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5