BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26030.1 Length=2161 Score E Sequences producing significant alignments: (Bits) Value Ahg484365 jgi|Araly1|484365|fgenesh2_kg.5__357__AT3G26030.1 3323 0.0 > Ahg484365 jgi|Araly1|484365|fgenesh2_kg.5__357__AT3G26030.1 Length=2131 Score = 3323 bits (1799), Expect = 0.0 Identities = 2053/2168 (95%), Gaps = 48/2168 (2%) Strand=Plus/Plus Query 2 TGCCAACGAAGCAATAGCTATGAAAAGCTAAACCCTTTCcttcttcttcttcttcttctt 61 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 TGCCAACGAAGCAATAGCTATGAAAAGCTAAACCCTTT-CTTCTTCTTCTTCTTCTTCTT 59 Query 62 cttcttcGATTGTTTAGATTACTTGGGTTTGACCCAAGTTTGCTTCTTTCTATGATTCAT 121 ||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| Sbjct 60 CTTCTTCAATTGTTTAGATCACTTGGGTCAAACCCAAGTCTGCTTCTTTCTATGATTCAT 119 Query 122 CAATCTAGATCTTGCTATCTGGGTCCAGAAACGATTCACGCGCTTCATTCATGATATAAA 181 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 120 CAATCTAGATCTTCCTATCTGGGTCCAGAAACGATTCACGCGCTTCGTTCATGATATAAA 179 Query 182 GTTACTACCttttttttattttaccttctgggtcatggttttgtctgcttttcgtctttt 241 ||||||||| |||| | || |||||||||||||||| ||||||||||||||||||| Sbjct 180 GTTACTACC----TTTT-TCTT-GCTTCTGGGTCATGGTTCTGTCTGCTTTTCGTCTTTT 233 Query 242 gcttttgtctGGATGATTCA-TAATCTCTCGAGATCTATTATGTTCACAAGAGTTGTTCT 300 |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct 234 GCTTTTGTCTGGATGATTCATTAATCTCT-GAGATCTAGTATGTTCACAAGAGTTGTTCT 292 Query 301 TATGCGTGGTGAGATGATCTTAGGAGT-GTTTCACTATCTTTCTTCAATTCGGGTTTTTA 359 ||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||| | Sbjct 293 TATGCGTGGTGAGATGATCTTAGGAGTAG-TTCAGTATCTTTCTTCAATTCGGATTTTGA 351 Query 360 GTTTCTGAGATCTG---TTTTTG----AAGAATCTGATCTGAGTTTGAGGAAGTTTGACT 412 |||||||||||||| |||||| ||||||| |||||||||||||||||| ||||| Sbjct 352 GTTTCTGAGATCTGTTTTTTTTGCTTAAAGAATCCGATCTGAGTTTGAGGAAG-TTGACC 410 Query 413 AA-ATAGATCGAAGAAGATGTTTAAGCAGATACTTGGGAAGCTTCCTAAGAAAACTTCTG 471 || ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 411 AATATAGATC---GAAGATGTTTAAGCAGATACTTGGGAAGCTTCCTAAGAAAACCTCTG 467 Query 472 CTAAGTTTTGGGATAATGGTGAATCCCAAACTCTAGATAACAACAACAATCAAGGAGGAG 531 |||||||||||||||||||||| |||||||||| |||| |||||||||| | ||||| Sbjct 468 CTAAGTTTTGGGATAATGGTGACTCCCAAACTCCAGAT---AACAACAATC-A--AGGAG 521 Query 532 GTGATGAAGTTTTAAGCCAGAGAACGTCATCAAATGGAGATACTAGTTTGGATTGTGTTT 591 ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| | Sbjct 522 GTGATGAAGTTTTAAGCCAGAGATCATCATCAAATGGAGATAC---TTTGGATTGTG--T 576 Query 592 CTTCTTTTGATGTATTGCCAAGGTTGAGAGATGTTTCCATCTCTGAGAAGCAAGAACTGT 651 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 577 -TTCTTTTGATGTATTGCCAAGGTTGAGAGATGTTTCCATCTCTGAGAAGCAAGAACTGT 635 Query 652 TTCTTAAGAAGCTTAGACTATGTTGTCTAGTGTTTGATTTTGTAGCTGAGCCTCAACAGA 711 |||||||||||||||||||||||||| | |||||||||||||| || ||||||||||||| Sbjct 636 TTCTTAAGAAGCTTAGACTATGTTGTGTTGTGTTTGATTTTGTCGCCGAGCCTCAACAGA 695 Query 712 ACTTCAAGGAGAAAGAGATCAAAAGGCAAACACTTCTTGAAGTTGTGGATTATGTTATCT 771 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 696 ACTTCAAGGAGAAAGAGATTAAAAGGCAAACACTTCTTGAAGTTGTGGATTATGTTATCT 755 Query 772 CTTCAGGGAATGGCAAGTTCCCTGAATCAGTTATTCAAGAAGCTACCAAGATGATTTCGG 831 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 756 CTTCAGGGAATGGCAAGTTTCCTGAATCAGTTATTCAAGAAGCTACGAAGATGATTTCGG 815 Query 832 CGAATCTCTTTAGTAATCCTCATCGACAATGGAAGAACAAAACTCCTGAGGCATTGGATT 891 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 816 CGAATCTCTTTAGTAATCCTCATCGACAATGGAAGAACAAAACTCCTGAAGCATTGGATT 875 Query 892 TGGAAGAAGAAGAAGGATCTTTGAATCCTTCTTGGCCTCACTTGCAGATTGTTTATGAGT 951 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 876 TGGAAGAAGAAGAAGGATCTTTGAATCCTTCTTGGCCTCACTTGCAGATTGTTTATGAGT 935 Query 952 TCCTTTTGAGAATCGTTGCATCTCCCAACACAGACCCCAAGATATCCAAGAAATACATCG 1011 ||||| | |||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 936 TCCTTCTAAGAATCGTCGCGTCTCCCAACACTGACCCCAAGATATCCAAGAAATACATCG 995 Query 1012 ATCATACATTCGTTCTCAAGCTATTGGATTTGTTTGATTCTGAAGATCCGAGGGAAAGAG 1071 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 996 ATCATACATTCGTTCTCAAGCTATTGGATTTGTTTGACTCTGAAGATCCGAGGGAAAGAG 1055 Query 1072 AGTATCTGAAAACGATACTTCACCGCATCTACGGGAGGTTTATGGTTCATCGCCCGTTCA 1131 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1056 AGTATCTGAAAACGATACTTCACCGGATCTACGGGAGGTTTATGGTTCATCGCCCGTTCA 1115 Query 1132 TCAGGAAAACTATGAACAACATCTTGTATGATTTTATATTCGAGACAGGGAAACACTCGG 1191 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1116 TCAGGAAAACTATGAACAACATCTTGTATGATTTTATATTCGAGACCGGGAAACACTCAG 1175 Query 1192 GAATCGCCGAGTTTCTTGAAGTTTTAGGATCCATCATCAATGGATTCGCTTTACCACTCA 1251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1176 GAATCGCCGAGTTTCTTGAAGTTTTAGGATCCATCATCAATGGATTCGCTTTACCACTCA 1235 Query 1252 AGGAAGAACACAAGCTCTTTCTTACTCGTGTCTTGATTCCTCTGCACAAGCTGAAATGCT 1311 ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| Sbjct 1236 AGGAAGAACACAAGCTCTTCCTTACTCGTGTCTTGATTCCTCTACACAAACTGAAATGCT 1295 Query 1312 TACCAAATTACCATCAACAGCTTTCTTACTGCGTTATACAGTTTGTTGAGAAAGATTGTA 1371 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1296 TACCAAATTACCATCAGCAGCTTTCTTATTGCGTTATACAGTTTGTTGAGAAAGATTGTA 1355 Query 1372 AGCTCGCGGATACCGTTATTAGAGGGATGTTGAAGTACTGGCCTGTTACTAATAGCGCTA 1431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1356 AGCTCGCGGATACCGTTATTAGAGGGATGTTGAAGTACTGGCCTGTTACTAATAGCTCTA 1415 Query 1432 AAGAAATCATGTTCTTGAATGAATTGGAGGAGATACTAGAAGCAACTCAATTAACAGAGT 1491 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1416 AAGAAATCATGTTCTTGAATGAATTGGAGGAGATATTAGAAGCAACTCAATTAACAGAGT 1475 Query 1492 TTGAACGGTGTATGGTTCCGCTCTCTCGCCAAATTGCTCAGTGCTTGAGCAGTTCTCACT 1551 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1476 TTGAACGGTGTATGATTCCGCTCTCTCGCCAAATTGCTCAGTGCTTAAGCAGTTCTCACT 1535 Query 1552 TTCAGGTAGCGGAACGGGCTTTATACTTATGGAACAACGATCATGTCACTAATTTAGTGA 1611 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1536 TTCAGGTAGCAGAACGGGCTTTATACTTATGGAACAACGATCATGTCACTAATTTGGTGA 1595 Query 1612 GACAGAACAGTAGAATCATTTTACCTATAGTGTTTCCCGCTTTGGAGAAAAACGGTAGCA 1671 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1596 GACAGAACAGTAGAATCATTTTACCGATAGTGTTTCCCGCTTTGGAGAAAAACGGTAGCA 1655 Query 1672 GCCATTGGAATCAGGCTGTGAAGAACTTGACAGAGAATGTTCTCAAGGTTTTGTCCGATA 1731 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1656 GCCATTGGAATCAGGCTGTGAAGAACTTGACCGAGAATGTTCTCAAGGTTTTGTCGGATA 1715 Query 1732 CAAATCCTGATTTATTCGAAGAATGTTTGCACAAGTTCCAAGAAGATCAGCAAAAAGCAG 1791 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1716 CAAATCCAGATTTATTCGAAGAATGTTTGCGCAAGTTCCAAGAAGATCAGCAAAAAGCAG 1775 Query 1792 AAGATACTAAAAAGAAGAATGGAGAAACCTGGAGACAGCTAGAGGAGATTGTTGCTTCAA 1851 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1776 AAGATACTAAAAAGAAGAATGGAGAAACCTGGAAACAGCTAGAGGAGATTGTTGCTTCAA 1835 Query 1852 TGGCGAAGTAAGAGTTTTTTCTGCACTTTACGTGATTCAACAAGAAATCGGTTTATTGTT 1911 ||||||||||||||||||| |||||||||||| ||| ||||||||| ||||||||||||| Sbjct 1836 TGGCGAAGTAAGAGTTTTT-CTGCACTTTACGCGATGCAACAAGAA-TCGGTTTATTGTT 1893 Query 1912 TTGTTTTGTTTCCTTTACGCCTGAAAGGTATATACATTTACTTTGCTTTGCTTGCTTCAT 1971 ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1894 TTGTTTT----C-TTTACGCCTGAAAGGTATATACATTTACTTTGCTTTGATTGCTTCA- 1947 Query 1972 TTAAGTATCTGGTTTCGACTTTAAGACTAGTTTAATTCAGTTAAACAGTGTGAGATTTTA 2031 | || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1948 --A-GTCTCTGGTTTCGACTTCAAGACTAGTTTAATTCAGTTAAACAGTGTGAGATTTTA 2004 Query 2032 CCTTTTTCAGTTCTTGATTTGTCTGTATACTTGGTTCATGTAAACATCTTGTTATGAAAA 2091 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2005 CCTCTTTCAGTTCTTGATTTGTCTGTATACTTCGTTCATGTAAACATCTTGTTATGAAAA 2064 Query 2092 CACGAATTTTCTATTGTCTGAAGTCACTTAGTTTATCAG-TGAAAGAGATTGCTCTAATA 2150 ||||||| ||||||||| |||||||||||||||||| || |||||||||| ||||||||| Sbjct 2065 CACGAATATTCTATTGTTTGAAGTCACTTAGTTTAT-AGGTGAAAGAGATGGCTCTAATA 2123 Query 2151 TAAAAATT 2158 | |||||| Sbjct 2124 TTAAAATT 2131 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81322673075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5