BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26060.2 Length=1020 Score E Sequences producing significant alignments: (Bits) Value Ahg484368 jgi|Araly1|484368|fgenesh2_kg.5__360__AT3G26060.1 1282 0.0 > Ahg484368 jgi|Araly1|484368|fgenesh2_kg.5__360__AT3G26060.1 Length=875 Score = 1282 bits (694), Expect = 0.0 Identities = 836/900 (93%), Gaps = 27/900 (3%) Strand=Plus/Plus Query 33 TTCTTCTACTAC-ATGCTCTAATCACGTCCTTGTAGAGGAAAAGaaaaaaaaTGGCTGCT 91 |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 TTCTTCTACT-CTATGCTCTAACCACGTCCTTGTAGAGGAAAAGAAAAAAAATGGCTGCT 59 Query 92 TCATCTTCCTCTTTCACTCTCTGTAATCACACCACACTTCGTACTCTCCCTCTGAGAAAG 151 |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 60 TCATCTTCCTCTTTCACTCTCTGTAATCACACCACACTTCACACTCTCCCTCAGAGAAAG 119 Query 152 ACCCTTGTCACCAAAACCCAATTTTCAGTTCCCACAAAATCATCAGAATCTAACTTCTTT 211 |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct 120 ACCCTTGTCACCAAAACCCATTTTTCCGTTCCCACAAAATCATCAGAATCTAATTTCTTT 179 Query 212 GGCTCCACACTCACTCACTCATCGTATATCTCCCCAGTCTCTTCCTCTTCTCTCAAAGGC 271 ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| || Sbjct 180 GGCTCCAGACTCACTCACTCGTCGTATCTCTCCCCAGTCTCTTCCTCTTCTCTCAAAAGC 239 Query 272 TTAATCTTTGCCAAGCAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGAT 331 |||||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| Sbjct 240 TTAATCTTTGCC-A--AGGTTAACAAGGGTCAGGCTGCACCAGACTTCACATTGAAGGAT 296 Query 332 CAAAACGGAAAGCCGGTGAGCCTCAAAAAGTATAAAGGGAAGCCTGTTGTTCTCTACTTC 391 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 CAGAACGGAAAGCCGGTGAGCCTCAAAAAGTATAAAGGGAAGCCTGTTGTTCTCTACTTC 356 Query 392 TACCCTGCAGATGAAACCCCTGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTAT 451 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 357 TACCCTGCAGATGAAACCCCTGGCTGCACCAAACAGGCTTGTGCTTTCAGAGACTCTTAT 416 Query 452 GAGAAATTCAAGAAAGCTGGTGCAGAGGTCATTGGCATTAGTGGAGATGACTCTGCTTCT 511 ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 417 GAGAAATTCAAGAAAGCCGGTGCAGAGGTCATTGGGATTAGTGGTGATGACTCTGCTTCT 476 Query 512 CACAAGGCGTTTGCAAGCAAATACAAACTACCGTATACATTGTTAAGCGACGAAGGGAAT 571 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 477 CACAAGGCGTTTGCAAGCAAATACAAACTCCCGTATACATTGTTAAGCGACGAAGGGAAT 536 Query 572 AAGGTGAGAAAAGATTGGGGAGTGCCTGGAGACCTGTTTGGAGCATTGCCAGGGAGACAG 631 ||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||| Sbjct 537 AAGGTGAGAAAAGATTGGGGAGTACCAGGAGACTTGTTTGGGGCATTGCCAGGGAGACAA 596 Query 632 ACTTACGTTCTTGACAAAAACGGTGTTGTTCAGCTCATCTACAACAACCAGTTCCAGCCT 691 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 ACTTACGTCCTTGACAAAAACGGTGTTGTTCAGCTCATCTACAACAACCAGTTCCAGCCT 656 Query 692 GAGAAACACATCGACGAGACCTTGAAGTTTCTCAAAGCTGCTTGATCAttctctctttct 751 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 657 GAGAAACACATCGACGAGACCTTGAAGTTTCTTAAAGCTGCTTGATCATTCTCTCTTTCT 716 Query 752 cttctttctcttctttcATGCATGTCTCATGTCTGTCTCCATGAGACCATGACCTTCTTA 811 ||| |||||||||||||||||| |||||||| || | || | | Sbjct 717 CTT--------------ATGCATGTCTCATGTCTGGCTCCATGA--CCTT--CC--C--A 754 Query 812 TATTGTTTCTGTTGAGTATGAATTTTCAATAATACCATGTTATACCAATGAGAAGGGAGT 871 || ||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 755 TACTGTTTCTTTTGATTATGAATTTTCAATAATACCATGTTATACCAATGAGAAGAGAGT 814 Query 872 TGGCTTTGGTCTAGTACAAAGATCACAACAGGATAAGTACTGAAGTGTGGTTAAAATGTT 931 |||||||||||| ||| |||||||||||| ||||||||| ||||| |||||||||||||| Sbjct 815 TGGCTTTGGTCTGGTAAAAAGATCACAACGGGATAAGTATTGAAGAGTGGTTAAAATGTT 874 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37932302415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5