BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26070.1 Length=1303 Score E Sequences producing significant alignments: (Bits) Value Ahg484369 jgi|Araly1|484369|fgenesh2_kg.5__361__AT3G26070.1 1539 0.0 Ahg484370 jgi|Araly1|484370|fgenesh2_kg.5__362__AT3G26080.1 883 0.0 > Ahg484369 jgi|Araly1|484369|fgenesh2_kg.5__361__AT3G26070.1 Length=1190 Score = 1539 bits (833), Expect = 0.0 Identities = 1050/1148 (91%), Gaps = 41/1148 (4%) Strand=Plus/Plus Query 1 CACCGAGGGCCTCTCGTTTCATGAGAGA-A-ACAAAAAATCTTATCTTTCTGACAACGGT 58 |||||||||||||||||||||||||||| | | |||||||||||||||| ||||| |||| Sbjct 1 CACCGAGGGCCTCTCGTTTCATGAGAGAGAGAAAAAAAATCTTATCTTTGTGACAGCGGT 60 Query 59 GGTGGTGTGTGATGTTGTCAGCCATGGCAAAGACAGAGCTACAACGAtctctctctcttt 118 ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 61 GGTGGTGTGTGATGTTGTCAGCCATGGCAAAGACAGAGCAACAACGA--TCTCTCTCTTT 118 Query 119 tcttcttcttctgtgtctgtctttaaatagagtctctttGAAACGAAGCAGCTTTGTCCT 178 || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 119 TC-CCTTCTTCTGTGTCTGTCTTTAAACAGAGTCTCTTTGAAACGAAGCAGCTTTGTCCT 177 Query 179 GTTCTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGCTTTAATGTCTCCGGCC 238 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 178 GTTTTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGGTTTAATGTCTCCGGCC 237 Query 239 ACTGGATTTAATTTTTCCGGCAGTCTTATGAAGTCAGACAGCGGCTTCGCCGTTCCGACA 298 ||||| |||||| ||||||||||||| ||||||| ||||| || || |||||||||| | Sbjct 238 ACTGGTTTTAATCTTTCCGGCAGTCTGATGAAGTTGGACAGTGGTTTTGCCGTTCCGATA 297 Query 299 AAGTTACAGAGTACTCGAAAAGGTGATCGAGAGAGATTGAGAGTCCAAGCTATTTTCAGT 358 ||||||||||||| |||||||||||||||||| ||||||||| |||||||| | |||||| Sbjct 298 AAGTTACAGAGTAATCGAAAAGGTGATCGAGAAAGATTGAGAATCCAAGCTGTCTTCAGT 357 Query 359 TTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAACAGAAACAGCTCAAACAA 418 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 358 TTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAGCAGAAACAGCTCAAACAA 417 Query 419 GAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCCTCGCCTGATGACCAG 478 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 418 GAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCTTCACCTGATGACCAG 477 Query 479 CTTCGGATTGATCAGTTAGCGCGTAAAGTGGAAGCAGTTAATCCCACCAAGGAGCCTTTG 538 || || ||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 478 CTACGTATTGATCAGTTAGCGCGTAAAGTGGAAGCTGTTAATCCCACCAAGGAGCCTCTG 537 Query 539 AAGTCTGATTTGGTCAATGGAAAATGGGAGCTCATTTATACAACCTCTGCTTCGATTTTG 598 || ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 538 AAATCTGATTTGATCAATGGAAAATGGGAACTCATTTATACAACTTCTGCTTCGATTTTG 597 Query 599 CAGGCAAAGAAACCAAGGTTCTTAAGATCAATAACCAACTACCAATCTATCAATGTGGAT 658 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 CAGGCAAAGAAACCGAGGTTCTTAAGATCAATAACCAACTACCAATCTATCAATGTGGAT 657 Query 659 ACACTTAAGGTGCAAAACATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACATA 718 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 658 ACACTGAAGGTGCAAAACATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACCTG 717 Query 719 AAACCCCTCAATTCGAAGAAGGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGATTT 778 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 718 AAACCCCTCAATTCGAAGAAAGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGCTTT 777 Query 779 ATTCCTATAAAAGCACCTGATAGCGCCCGCGGTGAACTTGAGATTACCTATGTGGACGAG 838 |||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||| Sbjct 778 ATTCCTGTAAAAGCACCTGATAGCGCACGCGGTGAACTAGAGATTACTTATGTGGACGAA 837 Query 839 GAACTACGGTTATCAAGAGGTGACAAAGGGAACTTGTTTATATTGAAGATGTTTGATCCC 898 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 838 GAACTACGGTTATCAAGGGGTGACAAAGGGAACTTGTTTATATTGAAGATGTTCGATCCC 897 Query 899 ACTTATCGAATCCCTCTTTGATCTACCAAACAAATGGTACCGAGCCATCCATCATACATA 958 ||||||||||||||||| |||||| || | | | ||||||||||||||| Sbjct 898 ACTTATCGAATCCCTCTCTGATCT-CC--------G--A--G--CCATCCATCATACAT- 941 Query 959 CTTGCTACAACTTGCTATGTCTCTCTTCATCATGTATGTAATCTAACATAAGAAA-AATT 1017 | | | | | || || || ||||||||||||||||||||||| ||| |||| Sbjct 942 -T-G-T-C---T--CT----CT-TC---ATCATGTATGTAATCTAACATAA-AAATAATT 983 Query 1018 AATAAGAGGGAA-AAAATGAGACGAGCTTCTGTCATTGTTTCAACTTGTTCAAATCAAAG 1076 |||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||| Sbjct 984 AATAAGAGGGAATAAAAAGAGACGAGCTTTTGTCATTTTTTCAACTTGTTCAAATCAAAG 1043 Query 1077 ATTCTGAATCTTGATTTGGTTGAGCAGTTAGTTCCAATCCTAAACTATGTGATGCTCAAG 1136 ||||||||||||||||||||||| ||||| | |||||||||||||||| |||| || || Sbjct 1044 ATTCTGAATCTTGATTTGGTTGAACAGTTGGCTCCAATCCTAAACTATATGATACTGAAT 1103 Query 1137 CAGTACAA 1144 |||||||| Sbjct 1104 CAGTACAA 1111 > Ahg484370 jgi|Araly1|484370|fgenesh2_kg.5__362__AT3G26080.1 Length=936 Score = 883 bits (478), Expect = 0.0 Identities = 670/759 (88%), Gaps = 27/759 (4%) Strand=Plus/Plus Query 171 TTTGTCCTGTTCTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGCTTTAATG- 229 ||||||||||| |||||| |||||||||||||| || |||||||||||||| ||||||| Sbjct 196 TTTGTCCTGTTTTGATATTCATGGCTTTACCTTGGTACTTAAAGACTGGAGTTTTAATGT 255 Query 230 -T-CTCCGGCCACTGGATTTAATTTTTCC-GGCAGTCTTATGAAGTCAGACAGCGGCTTC 286 | |||||||| | |||||| | | |||| |||||||||||||||| ||||| ||||| Sbjct 256 CTCCTCCGGCCGCCGGATTT-AGTCTTCCAGGCAGTCTTATGAAGTTGGACAGTGGCTTT 314 Query 287 GCCGTTCCGACAAAGTTACAGAGTACTCGAAAAGGTGATCGAGAGAGATTGAGAGTCCAA 346 |||||||||| ||||||||||| || ||| ||||||||||| || ||||||||| ||||| Sbjct 315 GCCGTTCCGAAAAAGTTACAGAATATTCGTAAAGGTGATCGGGAAAGATTGAGAATCCAA 374 Query 347 GCTATTTTCAGTTTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAACAGAAA 406 ||| ||||||| || | | | || |||||||||||| | | ||||| | |||| Sbjct 375 GCTGTTTTCAGCTT---T-C--C---TC---CAAGAAACGGTCAAACCGAGAAGCGGAAA 422 Query 407 CAGCTCAAACAAGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCCTCG 466 ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| || Sbjct 423 CAGCTCAAACAGGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCACG 482 Query 467 CCTGATGACCAGCTTCGGATTGATCAGTTAGCGCGTAAAGTGGAAGCAGTTAATCCC-AC 525 |||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| ||| || Sbjct 483 CCTGATGATCAGCTTCGGATTGATCAGTTAGCACGTAAGGTGGAAGCAG-TAAACCCAAC 541 Query 526 CAAGGAGCCTTTGAAGTCTGATTTGGTCAATGGAAAATGGGAGCTCATTTATACAACCTC 585 ||| |||||| |||| |||||||| ||||||| ||||||||||||||||||||||| || Sbjct 542 CAATGAGCCTCTGAAATCTGATTTAATCAATGGGAAATGGGAGCTCATTTATACAACATC 601 Query 586 TGCTTCGATTTTGCAGGCAAAGAAACCAAGGTTCTTAAGATCAATAACCAACTACCAATC 645 |||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 602 TGCTGCGATTTTGCAAGCAAAGAAACCAAGGTTCTTAAGATCAATAACAAACTACCAATG 661 Query 646 TATCAATGTGGATACACTTAAGGTGCAAA-ACATGGAGACTTGGCCTTTCTATAACTCGG 704 ||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||||| Sbjct 662 TATCAATATGGATACACTAAAGGTGCAAAGA-ATGGAGACTTGGCCTTTCTATAACTCGG 720 Query 705 TAACTGGAGACATAAAACCCCTCAATTCGAAGAAGGTTGCTGTGAAACTCCAAGTGTTTA 764 |||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 721 TAACTGGAGATTTGACGCCCCTCAATTCCAAGAAGGTTGCTGTGAAACTCCAAGTGTTTA 780 Query 765 AAATTCTCGGATTTATTCCTATAAAAGCACCTGATAGCGCCCGCGGTGAACTTGAGATTA 824 |||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 781 AAATTCTCGGCTTTATTCCTGTAAAAGCACCTGATAGCGCCCGCGGTGAACTAGAGATTA 840 Query 825 CCTATGTGGACGAGGAACTACGGTTATCAAGAGGTGACAAAGGGAACTTGTT-T--ATAT 881 | ||||||||||||||||||||| ||||||| || | |||||| |||||||| | |||| Sbjct 841 CTTATGTGGACGAGGAACTACGGATATCAAG-GG-G-CAAAGGCAACTTGTTGTTTATAT 897 Query 882 TGAAGATGTTTGATCCCACTTATCGAATCCCTCTTTGAT 920 |||||||||| ||||||||||||||||||||||| |||| Sbjct 898 TGAAGATGTTCGATCCCACTTATCGAATCCCTCTCTGAT 936 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48721087926 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5