BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26115.2
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484377 jgi|Araly1|484377|fgenesh2_kg.5__369__AT3G26115.2 926 0.0
> Ahg484377 jgi|Araly1|484377|fgenesh2_kg.5__369__AT3G26115.2
Length=1343
Score = 926 bits (501), Expect = 0.0
Identities = 619/673 (92%), Gaps = 20/673 (3%)
Strand=Plus/Plus
Query 697 TGGATGATTTTTCGAGTAT-GAAAACTTCTCGTAGAAAGGTTTTGATCGTTAATGAAGGC 755
||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 628 TGGATCATTTTTCGAGT-TCCAAAACTTCTCGTAGAAAGGTTTTGATTGTTAATGAAGGC 686
Query 756 GCAGGAGATGCTCTTGCATTACTTGGTATGTTTCGGTTAGTGCAGCATTTGTCACAGGAT 815
|| |||||||||||||||||||| |||||||||||||| |||||| |||| |||||||||
Sbjct 687 GCTGGAGATGCTCTTGCATTACTCGGTATGTTTCGGTTGGTGCAGTATTTATCACAGGAT 746
Query 816 CATTTACTCGGGAAGAAGAGGCCGGTTAAATTTGTAGTGGATGCTGGTACTGGAACAACT 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 CATTTACTCGGGAAGAAGAGGCCGGTTAAATTTGTAGTGGATGCTGGTACTGGAACAACT 806
Query 876 GCTGTGGGTTTAGGAGTTGCAGCTATGTCTTTAGGGCTTCCATGGGAAATCAATGCTGTG 935
|||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 807 GCTGTGGGCTTAGGAATTGCAGCTATGTCTTTAGGGCTTCCATGGGAGATCAATGCAGTG 866
Query 936 ATGCTAGCTGATACACTCAAAAATTACAAGAGACATGAAGATCACTTGATAGCAGAATTT 995
||||||||||||||| | |||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 867 ATGCTAGCTGATACATTTGAAAACTACAAAAGACATGAAGATCGCTTGATAGCAGAATTT 926
Query 996 TCGAGGCAGTTTCCTGGCTCAGTCTTCTGCAGCGGCTTGGATATGAATCAAATGATCAAA 1055
|||||||||||| || ||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 927 GCGAGGCAGTTTCTTGACTCGGTCTTCTGCAGCAGCTTGGATATGAATCAAATGATCAAA 986
Query 1056 TGGATAGATCGTCAACACCCGAGAAATTCCTTTTGTTCTTGCAGATTTGGGAAGGTCTTG 1115
|||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 987 TGGATAGATCGTCAACACCCGAGAAA----------------A--TTTGGGAAGATCTTG 1028
Query 1116 GAAGGAGAAGTGGAGATGTGTCGGAAAATTGCACAGGAGACAGGAGTTTTAGTGGATCCA 1175
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1029 GAAGGAGAAGTGGAAATGTGTCGGAAAATTGCACAAGAGACAGGAGTTTTAGTGGATCCA 1088
Query 1176 ATGTATACTTTAGCCGCTTGGGAGACAGCAACAGAGCTTGTGCAGGACGAGAAATCAAGC 1235
|||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1089 ATGTATACTTTAGCTGCTTGGGAGACAGCAACAGAGCTTGTGCACGAGGAGAAATCGAGC 1148
Query 1236 ATTGTAGTGATGCTTCACACTGGAGGCACTCTAGGGATGTTTGGTCTTGCTCAAAGATAC 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 ATTGTAGTGATGCTTCACACTGGAGGCACTCTAGGGATGTTTGGTCTTGCTCAAAGATAC 1208
Query 1296 AAAACTTGCTTCACTAACTTGAAAGATTAGGATACAATAACCAAGACTTAGAGCCAGAAA 1355
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1209 AAATCTTGCTTCACTAACTTGAAAGATTAGGATACAATTTCCAAGACTTAGAGCCAGAAA 1268
Query 1356 TCTAAAGATGGTT 1368
| |||||||||||
Sbjct 1269 TATAAAGATGGTT 1281
Score = 905 bits (490), Expect = 0.0
Identities = 568/605 (94%), Gaps = 7/605 (1%)
Strand=Plus/Plus
Query 13 GAGAAGCGTCAATGAAGGTCCAACGGTCAACTTTTTTGGCGGTGACCGGAAAATCAAATC 72
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1 GAGAAGCGTCAATGAAAGTCCAACGGTCAACTTTTTTCGCGGTGACCGGAAAATCGAATC 60
Query 73 TTCATCACTTTCACTCGTCTTCTCAGAGAATTC-CCATTACTTCCGAGATCGATTCACGA 131
|||||||||||||||| ||||||||| ||| || ||| | ||||||| | |||||||||
Sbjct 61 TTCATCACTTTCACTCTTCTTCTCAGGGAA-TCACCA-T--TTCCGAGCTTGATTCACGA 116
Query 132 GAGTTTGTGTCTAAATTACTCGATAGAAAATGGGGATTACAGTGTCCTGCATCTCCAATT 191
||||| ||||||||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct 117 CAGTTTTTGTCTAAATTACTTGAGAGAAAATGGGGATTACAAAGTCCTGCAACTCCAATT 176
Query 192 CAGCAGATTAGTGTTTCTTCTGTCAAAGGAATCGATAAATTCTCCTTCTTGAACAACACT 251
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 177 CAGCAGATTAGTGTTTCTTCTGTCAAAGGAATCGATAAATTCTCTTTCTTGAACAACACT 236
Query 252 CGTCCACATCTCGGAGATGAAATGTCGAAGTCGAAGCAAGGA-TCTTCTTTTTACATTCT 310
|||||||||||||||||||||||||||||||| |||||| || || |||||||| |||||
Sbjct 237 CGTCCACATCTCGGAGATGAAATGTCGAAGTCAAAGCAA-GATTCGTCTTTTTATATTCT 295
Query 311 TAGAGATGATCTTTTACATCCTCTTGTGAATGGTAACAAAGCTAGAAAGCTTGATGCTTT 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TAGAGATGATCTTTTACATCCTCTTGTGAATGGTAACAAAGCTAGAAAGCTTGATGCTTT 355
Query 371 GTTACCACTTGTTGAAGATCATAAAGTGACTGATTTGGTTACATGTGGAGGTTGTCAAAG 430
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 356 GTTACCACTTCTTGAAGATCATAAAGTAACTGATTTGGTTACATGTGGAGGTTGTCAAAG 415
Query 431 TGCACATACAGCTGCTGTTGCTGTTTCTTGTGCTGAGAGAGGTCTAAGATCACATTTGCT 490
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 416 TGCACATACAGCTGCAGTTGCTGTTTCGTGTGCCGAGAGAGGTCTAAGATCACATTTGCT 475
Query 491 ACTGCGTGGAGAACAGCCTGATGTTTTGACTGGTTATAACCTTGTTTCAACTATGTATGG 550
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ACTGCGTGGAGAACAGCCCGATGTTTTGACTGGTTATAACCTTGTTTCAACTATGTATGG 535
Query 551 AAATGTTCAGTATGTTCCAAGATCGAGGTATGCGAATAGAGAGGAAATGCTAAGAACTTA 610
||||||||||||| |||||||||| |||||||||||||||||||||||| | ||| || |
Sbjct 536 AAATGTTCAGTATATTCCAAGATCAAGGTATGCGAATAGAGAGGAAATGTTGAGATCTCA 595
Query 611 TGCGG 615
|||||
Sbjct 596 TGCGG 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5