BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26170.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484384 jgi|Araly1|484384|fgenesh2_kg.5__376__AT3G26170.1 2431 0.0
Ahg896477 jgi|Araly1|896477|Al_scaffold_0005_443 1574 0.0
Ahg322757 jgi|Araly1|322757|fgenesh1_pm.C_scaffold_5000301 1496 0.0
Ahg896478 jgi|Araly1|896478|Al_scaffold_0005_444 904 0.0
> Ahg484384 jgi|Araly1|484384|fgenesh2_kg.5__376__AT3G26170.1
Length=1644
Score = 2431 bits (1316), Expect = 0.0
Identities = 1539/1646 (93%), Gaps = 18/1646 (1%)
Strand=Plus/Plus
Query 11 AAATAAAAAATGGCGATCTCTTTCCTCTGTGTTTT-TCTCATCACCTTCGTTTCGTTAAT 69
||| ||||||||||||| |||||||||||| |||| ||| | ||| |||||||||| ||
Sbjct 1 AAAAAAAAAATGGCGATATCTTTCCTCTGT-TTTTGCCTCGTTACCCTCGTTTCGTTCAT 59
Query 70 CTTTTTTGCCAAGAAAATCAAACGATCAAAATGGAATCTTCCTCCAAGCCCTCCCAAGTT 129
|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 CTTTTTCGCCAAGAAGATCAAACGATCTAAATGGAATCTTCCTCCAAGCCCTCCCAAGTT 119
Query 130 TCCGGTCATCGGGAACTTACATCAGATTGGAGAATTGCCTCACAGGTCACTTCAACATCT 189
|||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| |||
Sbjct 120 TCCGGTCATCGGAAACTTACACCAGATTGGAGAATTGCCTCACTGGTCACTTCAACGTCT 179
Query 190 CGCCGAAAGATACGGACCTGTGATGCTTCTTCACTTTGGGTTTGTCCCTATAACTGTGGT 249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGCCGAAAGATACGGACCTGTGATGCTTCTTCACTTTGGGTTTGTCCCTATAACTGTGGT 239
Query 250 CTCATCGAGAGAAGCCGCTGAAGAAGTGCTTAGAACTCATGACCTAGACTGTTGCAGCAG 309
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CTCATCGAGAGAAGCAGCTGAAGAAGTGCTCAGAACTCATGACCTAGACTGTTGCAGCAG 299
Query 310 GCCTAAGCTTGTCGGGACAAGGTTACTCTCGCGGGATTTTAAAGATATCGGTTTTACGCC 369
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 300 GCCTAAGCTTGTCGGGACGAGGTTACTTTCGCGGGATTTTAAAGATATTGGTTTTACGCC 359
Query 370 ATACGGTAACGAGTGGAAGGCGCGGCGTAAGTTTGCCCTGCGTGAGCTTTTCTGTTTGAA 429
||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct 360 ATACGGTAAAGAGTGGAAGGAGCGGCGTAAGTTTGCGCTGCGTGAGCTTTTCTGCTTGAA 419
Query 430 AAAGGTTCAGTCCTTTAGGCATATCCGAGAGGAAGAATGTAACTTTCTGGTCAAGCAACT 489
||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 420 TAAGGTTCGGTCTTTTAGGCATATTAGAGAGGAAGAATGTAACTTTCTGGTCAAGAAACT 479
Query 490 GTCGGAATCTGCGGTTGATCGCTCTCCGGTCGATTTGAGCAAATCCCTTTTCTGGCTAAC 549
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 GTCGGAATCCGCGGTGGATCGCTCTCCGGTCGATTTGAGCAAATCACTTTTCTGGCTAAC 539
Query 550 CGCTAGTATCCTTTTTAGAGTTGCCTTAGGACAGAATTTTCACGAGAGCGATTTTATCGA 609
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 540 CGCAAGTATCCTTTTTAGAGTTGCCTTAGGACAGAATTTCCACGAGAGCAATTTTATCGA 599
Query 610 TAAAGAAAAG-ATCGAAGAGCTCGTGTTCGAAGCTGAGACTGCCCTAGCAAGTTTCACTT 668
||||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 TAAAG-ACAGTATCGAAGAGCTCGTGTTCGAAGCTGAGACTGCCCTAGCTAGTTTCACTT 658
Query 669 GTTCTGATTTCTTCCCTGTTGCCGGACTTGGATGGCTCGTTGATTGGTTTTCCGGACAAC 728
| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 659 GCTCTGATTTCTTCCCTGTTGCCGGACTTGGATGGCTCGTTGACTGGCTCTCCGGACAAC 718
Query 729 ACAAGAGACTCAACGATGTTT-TTTACAAGCTCGATGCTCTGTTTCAACATGTCATAGAT 787
|||| || ||||||||||||| ||| |||||| |||||||||||||||||||| || |||
Sbjct 719 ACAAAAGGCTCAACGATGTTTATTT-CAAGCTTGATGCTCTGTTTCAACATGTGATCGAT 777
Query 788 GATCATTT-AAATCCTGGAAGATCAAAAGAGCACGAAGACATCATCGATTCAATGTTGGA 846
|||||||| ||| ||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 778 GATCATTTGAAA-CCTGGAAGATCCAAAGATCACGAAGACATCATTGATTCAATGTTGGA 836
Query 847 TGTGATTCATAAACAAGGAGAGGACAGTTCCTTAGAGCTCACAATAGATCATATCAAGGG 906
||||||||||||| ||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 837 TGTGATTCATAAAGAAGGAAAAGATAGTTCCTTAGAGCTCACAATAGATCATATCAAGGG 896
Query 907 GTTTCTCGCGAATATATTTCTTGCAGGGATAGACACAGGGGCCATCACCATGATATGGGC 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTTTCTCGCGAATATATTTCTTGCAGGGATAGACACAGGGGCCATCACCATGATATGGGC 956
Query 967 AGTGACGGAGCTCGTTAAAAACCCGAAACTGATAAAGAAAGTTCAAGGCGATATCCGAGA 1026
| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 957 AATGACGGAGCTCGTTAAAAACCCGAAACTGATAAAGAAAGTTCAAGGTGAGATCCGAGA 1016
Query 1027 ACAACTTGGCAGCAATAAGGAGAGAATCACCGAGGAAGATATCGAGAAAGTTCCTTACTT 1086
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1017 ACAACTTGGCAGCAATAAGGAGAGAATCACCGAGGAAGATGTCGATAAAGTTCCTTACTT 1076
Query 1087 GAAGATGGTAATCAAAGAAACATTCAGGTTACACCCAGCAGCTCCTCTTATACTTCCAAG 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1077 GAAGATGGTAATCAAAGAAACATTCAGGTTACACCCAGCAGCTCCTCTTATACTCCCAAG 1136
Query 1147 GGAAACAATGGCTCACATCAAAGTTCAAGGGTATGATATTCCTCCCAAGAGGAGGATCTT 1206
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1137 GGAAACAATGGCTCACATCAAAGTTCAAGGCTATGATATTCCTCCCAAGAGGCGGATCTT 1196
Query 1207 GGTCAATGTTTCGGCAATAGGAAGAGATCCCAAACTCTGGACAAACCCGAAAGAGTTTGA 1266
|||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1197 GGTCAACGTTTTGGCAATAGGAAGAGATCCCAAACTCTGGACAAACCCGGAAGAGTTTAA 1256
Query 1267 CCCTGAGAGGTTTATGGATAGCTTTGTTGATTATAGGGGACAACATTACGAGCTCTTACC 1326
|||||| |||||||| ||||||| ||| ||||| || |||||||||||||||||||||||
Sbjct 1257 CCCTGACAGGTTTATAGATAGCTCTGTGGATTACAGAGGACAACATTACGAGCTCTTACC 1316
Query 1327 ATTTGGGTCCGGTCGAAGGATATGTCCCGGGATGCCAATGGGGATTGCTGCCGTCGAATT 1386
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1317 ATTTGGGTCCGGTCGAAGGATGTGTCCCGGGATGCCAATGGGGATTGCTACCGTCGAATT 1376
Query 1387 GGGACTCTTGAACTTACTTTACTTCTTCGATTGGAAGTTGCCTGATGGGATGACACATAA 1446
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1377 AGGACTCTTGAACTTACTTTACTTCTTCGATTGGAAGTTACCTGATGGGATGACACATAA 1436
Query 1447 AGATATCGATACTGAAGAAGCTGGTACTCTTACAATAGTCAAGAAAGTACCTCTCAAGCT 1506
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |
Sbjct 1437 AGATATCGATACTGAAGAAGCTGGTACTCTTACAATCGTCAAGAAAGTTCCTCTAAAGAT 1496
Query 1507 CGTTCCAGTTCGAGTTCAGTGATCAGACCAAACTCCAAACCTTT--T--G-----AATAA 1557
|||||||||||||||||||||| ||||| ||||||||||||| | | |||||
Sbjct 1497 TGTTCCAGTTCGAGTTCAGTGATG-GACCATACTCCAAACCTTTAATATGTTTTGAATAA 1555
Query 1558 ATATATCATGCAAATCATGTAAGCTTCTCTGATGATGTATGAAGTATATTTTTCAGTAAA 1617
|||||||||||||||||||||||||||| ||||||| |||| || |||||||||| ||||
Sbjct 1556 ATATATCATGCAAATCATGTAAGCTTCTGTGATGATATATGGAGAATATTTTTCAATAAA 1615
Query 1618 ATACTAAGTTGAAATTTCATATGCGA 1643
|||||||||||||||||| |||||||
Sbjct 1616 ATACTAAGTTGAAATTTCGTATGCGA 1641
> Ahg896477 jgi|Araly1|896477|Al_scaffold_0005_443
Length=1509
Score = 1574 bits (852), Expect = 0.0
Identities = 1308/1525 (86%), Gaps = 44/1525 (3%)
Strand=Plus/Plus
Query 26 ATCTCTTTCCTCTGTGTTTTTCTCATCACCTTCGTTTCGTTAATCTTTTTT-GCCAAGAA 84
|||||||| |||||||||||||||||||| || ||||||||||| |||||| | ||||||
Sbjct 7 ATCTCTTTGCTCTGTGTTTTTCTCATCACTTTAGTTTCGTTAAT-TTTTTTCGGCAAGAA 65
Query 85 AATCAAACGAT-CAAAATGGAATCTTCCTCCAAGCCCTCCCAAGTTTCCGGTCATCGGGA 143
| |||||| | | |||||||||||||| ||||||||||| |||||||||||||| || |
Sbjct 66 GACCAAACGCTGC-AAATGGAATCTTCCACCAAGCCCTCCTAAGTTTCCGGTCATAGGAA 124
Query 144 ACTTACATCAGA-TTGGAGAATTGCCTCACAGGTCACTTCAACATCTCGCCGAAAGATA- 201
|||||||||| | ||||||||||||||||||| |||||||||| |||||||| |||| |
Sbjct 125 ACTTACATCA-ACTTGGAGAATTGCCTCACAGATCACTTCAACGTCTCGCCGCAAGA-AC 182
Query 202 CGGACCTGTGATGCTTCTTCACTTTGGGTTTGTCCCTATAACTGTGGTCTCATCGAGAGA 261
||||| |||||||||||||||||| |||||||||||| |||||||| ||||||||| |||
Sbjct 183 CGGACATGTGATGCTTCTTCACTTAGGGTTTGTCCCTGTAACTGTGATCTCATCGAAAGA 242
Query 262 AGCCGCTGAAGAAGTGCTTAGAACTCATGACCTAGACTGTTGCAGCAGGCCTAAGCTTGT 321
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 243 AGCAGCTGAAGAAGTGCTTAGAACTCATGACCTAGACTGTTGCAGCAGGCCTAACCTTCT 302
Query 322 CGGGACAAGGTTACTCTCGCGGGATTTTAAAGATATCGGTTTTACGCCATACGGTAACGA 381
|||| | ||| || |||| |||| ||||||||||||| |||||| ||||||||||| ||
Sbjct 303 CGGGTCGAGGCTAATCTCTCGGGGTTTTAAAGATATCAATTTTACTCCATACGGTAAAGA 362
Query 382 GTGGAAGGCGCGGCGTAAG-T-TTGCCCTGCGTGAGCTTTTCTGTT-TGAAAAAGGTTCA 438
|||||||| ||| |||||| | ||| |||| ||||||||||||| | ||||||||| |
Sbjct 363 GTGGAAGGAGCGACGTAAGTTCTTG--GTGCGCGAGCTTTTCTGTTCT-AAAAAGGTTGA 419
Query 439 GTCCTTTAGG-CATATCCGAGAGGAAGAATGTAACTTTCTGGTCAAGCAACTGTCGGAAT 497
|| |||| || ||||| ||| |||||||||||||||||||||||| || |||| ||||
Sbjct 420 GT-CTTTTGGATATATCAAAGAAGAAGAATGTAACTTTCTGGTCAAGAAATTGTCAGAAT 478
Query 498 CTGCGGTTGATC-GCTCTCCGGTCGATTTGAGCAAATCCCTTTTCTG-GCTAACCGCTAG 555
| || || |||| | ||||||||||||||||||||| |||||||| | |||| | || ||
Sbjct 479 CGGCAGTGGATCAG-TCTCCGGTCGATTTGAGCAAAACCCTTTTC-GAGCTAGCTGCGAG 536
Query 556 TATCCTTTTTAGAGTTGCCTTAGGACAGAATTTTCACGAGAGCGATTTTATCGATAAAGA 615
||||| ||||||||| | || ||||||| ||| ||||||| || |||||| |||||||
Sbjct 537 GATCCTGTTTAGAGTTTCTTTTGGACAGAGTTTCCACGAGATTGAGTTTATCAATAAAGA 596
Query 616 AAAGATCGAAGAGCTCGTGTTCGAAGCT-GAGACTGCCCTA-GCAAGTTTCACTTGTTCT 673
|||||||| || || || || ||| | ||||| || | | || |||||||||| |||
Sbjct 597 CAAGATCGATGAACTTGTATTTGAA-ATAGAGACAGCTC-AGGCTAGTTTCACTTACTCT 654
Query 674 GATTTCTTCCCTGTTGCCGGACTTGGATGGCTCGTTGATTGGTTTTCCGGACAACACAAG 733
|||||||||||| | ||||||||||||||||| ||||| ||| ||||||| |||||||||
Sbjct 655 GATTTCTTCCCTATCGCCGGACTTGGATGGCTTGTTGACTGGATTTCCGGGCAACACAAG 714
Query 734 AGACTCAACGATG-TTTTTTACAAGCTCGATGCTCTGTTTCAACATGTCATAGATGATCA 792
|| ||||| |||| ||| || ||||||||||||||| |||| ||||| || ||||||||
Sbjct 715 AGGCTCAATGATGCTTTCCTA-AAGCTCGATGCTCTGCTTCAGCATGTGATCGATGATCA 773
Query 793 TTTAAATCCTGGAAGATCAAAAGAGCACGAAGACATCATCGAT-TCAATGTTGGATGTGA 851
|| | ||||||||||||| ||||| ||| |||| ||| ||||| | |||||||||| |||
Sbjct 774 TTCAGATCCTGGAAGATCGAAAGATCACAAAGATATCGTCGATGT-AATGTTGGATATGA 832
Query 852 TTCATAAACAAGG-AGAGGACAG-TTCCTTAGA-GCTCACAATAGATCATATCAAGGGGT 908
| ||||||||||| | | || | || ||| || |||||||||||||||||| |||| |
Sbjct 833 TGCATAAACAAGGCA-AAGA-TGATT-CTTTGAGGCTCACAATAGATCATATTAAGGCGC 889
Query 909 TTCTCGCGAATATATTTCTTGCAGGGATAGACACAGGGGC-CATCACCATGATATGGGCA 967
||||| |||||||| | | ||||||||||||||||| || | | |||||||||||| ||
Sbjct 890 TTCTCACGAATATAATAATCGCAGGGATAGACACAGGAGCTC-TTACCATGATATGGACA 948
Query 968 GTGACGGAGCTCGTTAAAAACCCGAAACTGATAAAGAAAGTTCAAGGCGATATCCGAGAA 1027
|||||||||||| || ||| ||| || | || |||||||||||| |||| ||||||| |
Sbjct 949 ATGACGGAGCTCGCTAGAAATCCGGAAGTAATGAAGAAAGTTCAATGCGAAATCCGAG-A 1007
Query 1028 CAAC-TTGGCAGCAATAAGGAGAGAATCACCGAGGAAGATATCGAGAAAGTTCCTTACTT 1086
| || |||||| ||||||||||||||||||| | |||||| | || |||||||||| |||
Sbjct 1008 CCACTTTGGCAACAATAAGGAGAGAATCACCAAAGAAGATCTTGATAAAGTTCCTTTCTT 1067
Query 1087 GAAGATGGTAATCAAAGAAACATTCAGGTTACACCCAGCAGCTCCTCTTATACTTCCAAG 1146
||| |||| ||||| ||| ||||||| ||| |||||| |||||||||| | || |||||
Sbjct 1068 GAACTTGGTGATCAAGGAATCATTCAGATTATACCCAGTAGCTCCTCTTCTGCTACCAAG 1127
Query 1147 GGAAACAATGGCTCACATCAAAGTTCAAGGGTATGATATTCCTCCCAAGAGGAGGATCTT 1206
|||||||||||||||| |||| |||||||| ||||||||||||||||||||| |||||||
Sbjct 1128 GGAAACAATGGCTCACGTCAAGGTTCAAGGCTATGATATTCCTCCCAAGAGGCGGATCTT 1187
Query 1207 GGTCAATGTTTCGGCAATAGGAAGAGATCCCAAACTCTGGACAAACCCGAAAGAGTTTGA 1266
||||||||||| ||| |||||||||||||| |||||||||| ||||||| |||||||| |
Sbjct 1188 GGTCAATGTTTGGGCGATAGGAAGAGATCCGAAACTCTGGAAAAACCCGGAAGAGTTTAA 1247
Query 1267 CCCTGAGAGGTTTATGGATAGCTTTGTTGATTATAG-GGGACAACATTACGAGCTCTTAC 1325
||| ||||||||||| |||||| || |||| ||| ||| ||||||| |||||| ||||
Sbjct 1248 CCCCGAGAGGTTTATCGATAGCCCCGTGGATTTTAGAGGG-CAACATTTCGAGCTTTTAC 1306
Query 1326 CATTTGGGTCCGGTCGAAGGATATGTCCCGGGATGCCA-ATGGGGATTGCTGC-CGTCGA 1383
| |||||||| || ||||||||||||||||||||| | |||||||| ||| | | | ||
Sbjct 1307 CGTTTGGGTCTGGACGAAGGATATGTCCCGGGATG-GAGATGGGGATGGCTACTC-TGGA 1364
Query 1384 ATTGGGACTCTTGAACTTACTTTACTTCTTCGATTGGAAGTTGCCTGATGGGATGACACA 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ATTGGGACTCTTGAACTTACTTTACTTCTTCGATTGGAAGTTGCCTGATGGGATGACACA 1424
Query 1444 TAAAGATATCGATACTGAAGAAGCTGGTACTCTTACAATAGTCAAGAAAGTACCTCTCAA 1503
||||||||||||||||||||||||||||||||||||| | || |||||| ||||||| ||
Sbjct 1425 TAAAGATATCGATACTGAAGAAGCTGGTACTCTTACAGTCGTTAAGAAAATACCTCTAAA 1484
Query 1504 GCTCGTTCCAGTTCGAGTTCAGTGA 1528
||| |||||||||||||||||||||
Sbjct 1485 GCTTGTTCCAGTTCGAGTTCAGTGA 1509
> Ahg322757 jgi|Araly1|322757|fgenesh1_pm.C_scaffold_5000301
Length=1509
Score = 1496 bits (810), Expect = 0.0
Identities = 1296/1529 (85%), Gaps = 40/1529 (3%)
Strand=Plus/Plus
Query 20 ATGGCGATCTCTTTCCTCTGTGTTTTTCTCATCACCTTCGTTTCGTTAATCTTT-T-TTG 77
||||| |||||||| |||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGGCAATCTCTTTACTCTGTCTTTTTCTCATCACCTTCGTTTCGTTAATCTTTGTCTT- 59
Query 78 CCAAGAAAATCAAACGATCAAAATGGAATCTTCCTCCAAGCCCTCCCAAGTTTCCGGTCA 137
|||||| |||||||| | |||||||||||||||||||| ||||| | |||||||||||
Sbjct 60 -CAAGAAGATCAAACGCTTTAAATGGAATCTTCCTCCAAGTCCTCCTACGTTTCCGGTCA 118
Query 138 TCGGGAACTTACATC-AGATTGGAGAATTGCCTCACAGGTCACTTCAACATCTCGCCGAA 196
|||| |||||||| | || |||||||||||||||| |||||| |||||| ||| ||||||
Sbjct 119 TCGGAAACTTACACCAAG-TTGGAGAATTGCCTCATAGGTCATTTCAACGTCTAGCCGAA 177
Query 197 AGATA-CGGACCTGTGATGCTTCTTCACTTTGGGTTTGTCCCTATAACTGTGGTCTCATC 255
||| | ||||| ||| ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 178 AGA-ACCGGACATGTTATGCTTCTTCACTTTGGGTTTGTCCCTGTAACTGTTATCTCATC 236
Query 256 GAGAGAAGCCGCTGAAGAAGTGCTTAGAACTCATGACCTAGACTGTTGCAGCAGGCCTAA 315
||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 237 GAGGGAAGCAGCTGAAGAAGTGCTTAGAACTCATGACCTAAAGTGTTGCAGCAGGCCTAA 296
Query 316 GCTTGTCGGGACAAGGTTACTCTCGCGGGATTTTAAAGATATCGGTTTTACGCCATACGG 375
|||||||||||| ||| || |||| |||| ||||||||||||| ||||||| ||||||||
Sbjct 297 GCTTGTCGGGACGAGGCTAATCTCTCGGGGTTTTAAAGATATCAGTTTTACTCCATACGG 356
Query 376 T-AACGAGTGGAAGGCGCGGCGTAAG-T-TTGCCCTGCGTGAGCTTTTCTGTTTGAAAAA 432
| || ||||||| || |||||||||| | ||| |||| |||||||||||||| |||||
Sbjct 357 TGAA-GAGTGGAGGGAGCGGCGTAAGTTCTTG--GTGCGAGAGCTTTTCTGTTTTAAAAA 413
Query 433 GGTTCAGTCCTTTAG-GCA-TATCCGAGAGGAAGAATGTAACTTTCTGGTCAAGCAACTG 490
||||||||| ||| | | | | || ||| |||||||||||||||||||||||| |||||
Sbjct 414 GGTTCAGTCTTTTCGAG-AGT-TCATAGAAGAAGAATGTAACTTTCTGGTCAAGAAACTG 471
Query 491 TCGGAATCTGCGGTTGATCGCTCTCCGGTCGATTTGAGCAAATCCCTTTTCTGGCTAACC 550
|||||||| || || | ||| ||||||| |||||||||||| |||||||||||||| |
Sbjct 472 TCGGAATCAGCAGTAGGTCGGGCTCCGGTTGATTTGAGCAAAACCCTTTTCTGGCTAGCT 531
Query 551 GCTAGTATCCTTTTTAGAGTTGCCTTAGGACAGAATTTTCACGAGAGCGATTTTATCGAT 610
|| |||||||| |||||| |||| || ||||||| ||| ||||| | ||| |||| ||||
Sbjct 532 GCGAGTATCCTGTTTAGAATTGCTTTTGGACAGAGTTTCCACGACAACGAGTTTAACGAT 591
Query 611 AAAGAAAAGATCGAAGAGCTCGTGTTCGAAGCTGAGACTGCCCTA-GCAAGTTTCACTTG 669
||||| |||||||| || || | || ||| | ||||| || | | || ||||||||||
Sbjct 592 AAAGACAAGATCGATGAACTTATATTTGAAACCGAGACAGCTC-AGGCTAGTTTCACTTA 650
Query 670 TTCTGATTTCTTCCCTGTTGCCGGACTTGGATGGCTCGTTGATTGGTTTTCC-GGACAAC 728
||||||||||||||| | ||||||||||||||||| ||||| ||| ||||| ||| |||
Sbjct 651 CTCTGATTTCTTCCCTATGGCCGGACTTGGATGGCTTGTTGACTGGATTTCCGGGA-AAC 709
Query 729 ACAAGAGACTCAACGATGT-TTTTTACAAGCTCGATGCTCTGTTTCAACATGTCATAGAT 787
||||| | |||||| |||| || || ||||||||||||| ||||||||| ||| || |||
Sbjct 710 ACAAGTGGCTCAACAATGTCTTCTT-CAAGCTCGATGCTTTGTTTCAACTTGTGATCGAT 768
Query 788 GATCATTTAAATCCTGGAAGATCAAAAGAGCACGAAGACATCATCGAT-TCAATGTTGGA 846
||||||| ||||||| ||||||| ||||| ||| |||| ||| ||||| | |||||||||
Sbjct 769 GATCATTCAAATCCTAGAAGATCGAAAGACCACAAAGATATCGTCGATGT-AATGTTGGA 827
Query 847 TGTGATTCATAAACAAGG-AGAGGACAG-TTCCTTAGA-GCTCACAATAGATCATATCAA 903
|||| | ||||||||||| | | || | || ||| || |||||||| ||||||||| ||
Sbjct 828 TGTGGTGCATAAACAAGGCA-AAGA-TGATT-CTTTGAGGCTCACAACAGATCATATTAA 884
Query 904 GGGGTTTCTCGCGAATATATTTCTTGCAGGGATAGACACAGGGGC-CATCACCATGATAT 962
||| ||||| |||||||| || | ||||||||||||||||| || | | || |||||||
Sbjct 885 GGGACTTCTCACGAATATAATTATCGCAGGGATAGACACAGGAGCTC-TTACTATGATAT 943
Query 963 GGGCAGTGACGGAGCTCGTTAA-AAACCCGAAACTGATAAAGAAAGTTCAAGGCGATATC 1021
||||| |||||||||||| || ||||||| |||| || ||||||||||||||||| |||
Sbjct 944 GGGCAATGACGGAGCTCG-CAAGAAACCCGGAACTAATGAAGAAAGTTCAAGGCGAGATC 1002
Query 1022 CGAGAACAACTTGGCAGCAATAAGGAGAGAATCACCGAGGAAGATATCGAGAAAGTTCCT 1081
||||| | ||||||| | |||| ||||||||||| | |||||| || | |||||||||
Sbjct 1003 CGAGACCGCCTTGGCAACGATAAAGAGAGAATCACAAAAGAAGATCTCAATAAAGTTCCT 1062
Query 1082 TACTTGAAGATGGTAATCAAAGAAACATTCAGGTTACACCCAGCAGCTCCTCTTATACTT 1141
| |||||| |||| ||||| ||||||||||| ||||| |||| |||||||||| ||||
Sbjct 1063 TTCTTGAACTTGGTGATCAAGGAAACATTCAGATTACATCCAGTAGCTCCTCTTCTACTC 1122
Query 1142 CCAAGGGAAACAATGGCTCACATCAAAGTTCAAGGGTATGATATTCCTCCCAAGAGGA-G 1200
||||| |||||||||||||||||||| |||||||| |||||||||||||| |||| || |
Sbjct 1123 CCAAGAGAAACAATGGCTCACATCAAGGTTCAAGGCTATGATATTCCTCCAAAGA-GACG 1181
Query 1201 GATCTTGGTCAATGTTTCGGCAATAGGAAGAGATCCCAAACTCTGGACAAACCCGAAAGA 1260
|||||| || || || |||||||||||||||||| |||||||||| ||||||| ||||
Sbjct 1182 GATCTTAGTAAACACTTGGGCAATAGGAAGAGATCCGAAACTCTGGAAAAACCCGGAAGA 1241
Query 1261 GTTTGACCCTGAGAGGTTTATGGATAGCTTTGTTGATTATAGGGGACAACATTACGAGCT 1320
|||| |||| ||||||||||| | | | ||| |||||||| |||||||||| ||||||
Sbjct 1242 GTTTAACCCCGAGAGGTTTATCAACAACCCTGTGGATTATAGAGGACAACATTTCGAGCT 1301
Query 1321 CTTACCATTTGGGTCCGGTCGAAGGATATGTCCCGGGATGCCAATGGGGATTGCTGCCGT 1380
|||||| || |||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 1302 CTTACCGTTCGGGTCCGGTCGAAGGATATGTCCCGGGATGGGGTTGGGGATCACTATAGT 1361
Query 1381 CGAATTGGGACTCTTGAACTTACTTTACTTCTTCGATTGGA-AGTTGCCTGATGGGATGA 1439
|||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1362 GGAATTGGGACTCTTGAACTTACTTTACTTCTTCGATTGGAGAGCA-CCAGATGGGATGA 1420
Query 1440 CACATAAAGATATCGATACTGAAGAAGCTGGTACTCTTACAATAGTCAAGAAAGTACCTC 1499
|||||||||| |||||||| ||||| || |||||||||| | ||||||||||||||||
Sbjct 1421 CACATAAAGACATCGATACAGAAGATTTTGCTACTCTTACAGTCGTCAAGAAAGTACCTC 1480
Query 1500 TCAAGCTCGTTCCAGTTCGAGTTCAGTGA 1528
||||||| || ||||||| ||| ||||||
Sbjct 1481 TCAAGCTTGTCCCAGTTCAAGTCCAGTGA 1509
> Ahg896478 jgi|Araly1|896478|Al_scaffold_0005_444
Length=1260
Score = 904 bits (489), Expect = 0.0
Identities = 772/905 (85%), Gaps = 33/905 (4%)
Strand=Plus/Plus
Query 20 ATGGCGATCTCTTTCCTCTGTGTTTTTCTCATCACCTTCGTTTCGTTAATCTTTTTTGCC 79
||||| |||||||| ||||| || |||||||| |||| | ||||||||| || |||
Sbjct 1 ATGGCAATCTCTTTGTTCTGTCTTCTTCTCATCGCCTTTGCGTCGTTAATCCTTCTTGGT 60
Query 80 AAGAAAATCAAACGATCAAAATGGAATCTTCCTCCAAGCCCTCCCAAGTTTCCGGTCATC 139
||||| |||||||| || |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 61 AAGAAGATCAAACGCTCTAAATGGAATCTTCCTCCAAGCCCTCCAAAGTTTCCAGTCATC 120
Query 140 GGGAACTTACATCAGA-TTGGAGAATTGCCTCACAGGTCACTTCAACATCTCGCCGAAAG 198
|| ||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 121 GGAAACTTACATCA-ACTTGGAGAATTGCCTCACAGGTCACTTCAACGTCTAGCCGAAAG 179
Query 199 ATA-CGGACCTGTGATGCTTCTTCACTTTGGGTTTGTCCCTATAACTGTGGTCTCATCGA 257
| | ||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 180 A-ACCGGACATGTTATGCTTCTTCACTTAGGGTTTGTCCCTGTAACTGTTATCTCATCGA 238
Query 258 GAGAAGCCGCTGAAGAAGTGCTTAGAACTCATGACCTAGACTGTTGCAGCAGGCCTAAGC 317
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAGAAGCAGCTGAAGAAGTGCTTAGAACTCATGACCTAGACTGTTGCAGCAGGCCTAAGC 298
Query 318 TTGTCGGGACAAGGTTACTCTCGCGGGATTTTAAAGATATCGGTTTTACGCCATACGGT- 376
|||| ||||| ||| || | || |||| |||||||||| |||||||||| |||||||||
Sbjct 299 TTGTTGGGACGAGGCTAATTTCTCGGGGTTTTAAAGATGTCGGTTTTACCCCATACGGTG 358
Query 377 AACGAGTGGAAGGCGCGGCGTAAGTT-T-GCCCTGCGTGAGCTTTTCTGTTTGAAAAAGG 434
|| |||||||||| |||||| ||||| | | |||||||| ||||||||||||| ||||
Sbjct 359 AA-GAGTGGAAGGAGCGGCGCAAGTTCTTGG--TGCGTGAGTTTTTCTGTTTGAAGAAGG 415
Query 435 TTCAGTCCTTTAGGC-ATATCCGAGAGGAAGAATGTAACTTTCTGGTCAAGCAACTGTCG 493
||||||| ||| || ||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 416 TTCAGTC-TTTCGGGTATATCAGAGAGGAAGAATGTAACTTTCTTGTCAAGAAACTGTCG 474
Query 494 GAATCTGCGGTTGATCGCTCTCCGGTCGATTTGAGCAAATCCCTTTTCTGGCTAACCGCT 553
||||| || || ||||| |||| |||||| |||||||| |||||||||||||||||||
Sbjct 475 GAATCAGCAGTGGATCGAACTCCAGTCGATATGAGCAAAACCCTTTTCTGGCTAACCGCC 534
Query 554 AGTATCCTTTTTAGAGTTGCCT-TAGGACAGAATTTTCACGAGAGCGATTTTATCGATAA 612
|||||||| ||||||||||| | | ||||||| ||| |||||||| | |||||||||||
Sbjct 535 AGTATCCTGTTTAGAGTTGCTTCT-GGACAGAGTTTCCACGAGAGTAAGTTTATCGATAA 593
Query 613 AGAAAAGATCGAAGAGCTCGTGTTCGAAGCTGAGACTGCCCTAG-CAAGTTTCACTTGTT 671
||| ||| |||| ||||| ||||| ||||| ||||| || | || | ||||||||||| |
Sbjct 594 AGACAAGGTCGATGAGCTTGTGTTTGAAGCCGAGACAGCTC-AGGCTAGTTTCACTTGCT 652
Query 672 CTGATTTCTTCCCTGTTGCCGGACTTGGATGGCTCGTTGATTGGT-TTTCCGGACAACAC 730
||||||||||||| ||||||||||||||||| ||||||| || | ||||||| ||||||
Sbjct 653 CTGATTTCTTCCCCATTGCCGGACTTGGATGGATCGTTGACTG-TATTTCCGGGCAACAC 711
Query 731 AAGAGACTCAACGATGTTTT-TTACAAGCTCGATGCTCTGTTTCAACATGTCATAGATGA 789
||||| ||||| |||||||| || |||||| ||||||||||||||| ||| || |||||
Sbjct 712 AAGAGGCTCAAAGATGTTTTCTT-CAAGCTGGATGCTCTGTTTCAAGGTGTGATCGATGA 770
Query 790 TCATTTAAATCCTGG-A-A-GATCAAAAGAGCAC-GAAGACATCATCGAT-TCAATGTTG 844
||||||| |||| || | | |||| |||| ||| || || || ||||| | |||||||
Sbjct 771 TCATTTACATCCGGGCAGAAGATCTGAAGATCACAGA-GATATTGTCGATAT-AATGTTG 828
Query 845 GATGTGATTCATAAACAAGG-AGAGGACAGTTCCTTAGA-GCTCACAAT-AGATCATATC 901
|||||||| ||||||||||| | || | | |||||| || ||||||||| | || | |||
Sbjct 829 GATGTGATGCATAAACAAGGCAAAG-ATATTTCCTT-GAAGCTCACAATCA-ATAACATC 885
Query 902 AAGGG 906
|||||
Sbjct 886 AAGGG 890
Score = 438 bits (237), Expect = 5e-122
Identities = 322/363 (89%), Gaps = 6/363 (2%)
Strand=Plus/Plus
Query 1169 GTTCAAGGGTATGATATTCCTCCCAAGAGGA-GGATCTTGGTCAATGTTTCGGCAATAGG 1227
|||||||| ||| |||||||||| |||| | ||||||||||||||| || ||| |||||
Sbjct 901 GTTCAAGGCTATAATATTCCTCCGAAGA-CACGGATCTTGGTCAATGCTTGGGCGATAGG 959
Query 1228 AAGAGATCCCAAACTCTGGACAAACCCGAAAGAGTTTGACCCTGAGAGGTTTATGGATAG 1287
||||||||| ||| | |||||||||||| |||||||| |||| ||||||||||| ||||
Sbjct 960 AAGAGATCCTAAAGTTTGGACAAACCCGGAAGAGTTTAACCCCGAGAGGTTTATCAATAG 1019
Query 1288 --CTTTGTTGATTATAGGGGACAACATTACGAGCTCTTACCATTTGGGTCCGGTCGAAGG 1345
||||| ||||| || |||||||||| ||||| ||||| || || || |||||||||
Sbjct 1020 CCCTTTG--GATTACAGTGGACAACATTTTGAGCTATTACCGTTCGGCTCTGGTCGAAGG 1077
Query 1346 ATATGTCCCGGGATGCCAATGGGGATTGCTGCCGTCGAATTGGGACTCTTGAACTTACTT 1405
|||||||||||||| | |||||||| ||| | || ||||||||||||||||||||||||
Sbjct 1078 GTATGTCCCGGGATGGCGATGGGGATGGCTACTGTGGAATTGGGACTCTTGAACTTACTT 1137
Query 1406 TACTTCTTCGATTGGAAGTTGCCTGATGGGATGACACATAAAGATATCGATACTGAAGAA 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TACTTCTTCGATTGGAAGTTGCCTGATGGGATGACACATAAAGATATCGATACTGAAGAA 1197
Query 1466 GCTGGTACTCTTACAATAGTCAAGAAAGTACCTCTCAAGCTCGTTCCAGTTCGAGTTCAG 1525
||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1198 GCTGGTACTCTTACAATCGTCAAGAAAGTTCCTCTAAAGCTTGTTCCAGTTCGAGTTCAG 1257
Query 1526 TGA 1528
|||
Sbjct 1258 TGA 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5