BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26210.1
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936320 jgi|Araly1|936320|scaffold_500511.1 2523 0.0
Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227 106 6e-22
> Ahg936320 jgi|Araly1|936320|scaffold_500511.1
Length=1547
Score = 2523 bits (1366), Expect = 0.0
Identities = 1489/1549 (96%), Gaps = 6/1549 (0%)
Strand=Plus/Plus
Query 24 cagagcaag-a-aaaaaaaaaTGTCAATTTTCCTCTGTTTCCTCTTGCTTTTGCTACTTC 81
||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 CAGAGCAAGAACAAAAAAAAATGTCAATTTTCCTCTGTTTCCTCTGGCTTTTGCTACTTC 60
Query 82 TTTTAGTAACAATAATCTTCACAAGAAAATCTCAATCCTCAAAACTGAAACTTCCTCCGG 141
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 61 TTTTAGTAACAATAATCTTCACAAAAAAATCTCAATCCTCAAAACTGAAACTTCCTCCAG 120
Query 142 GTCCACCAAAACTTCCGATTATCGGAAACTTACACTACCTTAACGGATTACCTCACAAAT 201
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCCATCGAAACTTCCGATCATCGGAAACTTACACTACCTTAACGGATTACCTCACAAAT 180
Query 202 GTCTCCTAAACCTCTGGAAAATCCACGGACCAGTGATGCAGCTCCAGTTAGGATACGTCC 261
|||||| |||||| | ||||| |||||||||||||||||||||| ||||||||| |||||
Sbjct 181 GTCTCCAAAACCTTTCGAAAACCCACGGACCAGTGATGCAGCTCAAGTTAGGATTCGTCC 240
Query 262 CTCTAGTCGTAATCTCCTCAAACCAAGCAGCAGAAGAAGTTCTCAAAACTC-ATGACCTA 320
|| | ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 241 CTTTGGTCGTAATCTCTTCAAACCAAGCAGCAGAAGAAGTTCTCAAAAC-CAATGACCTA 299
Query 321 GATTGTTGCAGCCGACCAGAAACCATAGCGTCAAAAACAATATCTTACAACTTCAAAGAC 380
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 300 GATTGTTGCAGCCGACCAGAAACCATAGCGTCAAAGACAATCTCTTACAACTTCAAAGAC 359
Query 381 ATAGGATTCGCTCCTTACGGCGAAGAATGGAGAGCGTTGAGGAAGCTCGCTGTGATCGAG 440
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATCGGATTCGCTCCATACGGCGAAGAATGGAGAGCGTTGAGGAAGCTCGCTGTGATCGAG 419
Query 441 CTATTCAGCTTGAAAAAATTCAACTCTTTTAGGTATATAAGAGAAGAAGAGAATGACTTG 500
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 CTATTCAGCTTGAAAAAATTCAACTCTTTTAGGTATATTAGAGAAGAAGAGAATGACTTG 479
Query 501 TTGGTCAAGAAACTCTCTGAAGCTTCAGAGAAACAATCTCCCGTGAATTTGAAGAAAGCC 560
||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||
Sbjct 480 TTGGTCAAGAAACTCTCTGAAGCTTCACAGAAACAATCTCCTGTGGATTTAAAGAAAGCC 539
Query 561 CTTTTCACTCTAAG-CGCTAGTATCGTGTGTAGACTCGCTTTCGGTCAAAATCTTCACGA 619
||||||||| | || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 CTTTTCACT-TTAGTCGCTAGTATCGTGTGTAGACTCGCGTTCGGTCAAAATCTTCACGA 598
Query 620 ATCCGAGTTTATAGATGAAGATAGCATGGAGGATTTAGCTTCTAGGTCGGAGAAGATTCA 679
|||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 599 ATCCGAGTTTATCGATGAAGATAGTATGGAGGATTTAGCGTCTAGGTCAGAGAAGATTCA 658
Query 680 GGCGAAATTCGCTTTCTCTAACTTCTTCCCCGGAGGTTGGATTCTTGATAAAATCACCGG 739
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGCGAAATTCGCTTTCTCTAATTTCTTCCCCGGAGGTTGGATTCTTGATAAAATCACCGG 718
Query 740 TCAAAGCAAGAGCCTTAACGAAATTTTTGCTGATCTCGACGGATTCTTTAACCAAGTGCT 799
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 719 TCAAAGCAAGAGTCTTAACGAAATTTTCGCAGATCTCGACGGATTCTTTAACCAAGTGCT 778
Query 800 CGATGATCATCTAAAGCCAGGAAGAAAAGTATTAGAGACTCCAGATGTTGTGGATGTGAT 859
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 CGATGATCATCTAAAGCCAGGAAGAAGAGTATTAGAGACTCCAGATGTTGTGGATGTGAT 838
Query 860 GATTGATATGATGAATAAACAAAGCCAAGATGGTTCTTTTAAGCTCACTACTGATCATAT 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GATTGATATGATGAATAAACAAAGCCAAGATGGTTCTTTTAAGCTCACTACTGATCATAT 898
Query 920 CAAAGGAATCATCTCTGATATATTTCTAGCCGGAGTAAACACAAGTGCAACGACCATTCT 979
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 899 CAAAGGAATCATCTCTGATATATTTCTTGCCGGAGTAAACACAAGTGCAACGACCATTCT 958
Query 980 TTGGGCAATGACAGAGTTAATAAGAAACCCAAGAGTGATGAAGAAAGTGCAAGATGAGGT 1039
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 959 TTGGGCAATGACAGAGTTAATAAGAAACCCAAGAGTGATGAAGAAAGTACAAGATGAGGT 1018
Query 1040 TAGGACAGTACTTGGTGAAAAAAGAGACAGAATCACAGAACAAGATCTTAACCAACTTAA 1099
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 TAGGACAGTACTTGGTGAAAAAAGAGAGAGAATCACAGAACAAGATCTTAACCAACTTAA 1078
Query 1100 CTACTTCAAGCTAGTGATCAAAGAGACATTTAGATTACACCCAGCAGCTCCACTTTTATT 1159
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 CTACTTCAAGCTAGTGATCAAAGAGACATTCAGATTACACCCAGCAGCTCCACTTTTATT 1138
Query 1160 ACCAAGAGAGGCAATGGCTAAAATCAAGATCCAAGGCTATGACATTCCAGAGAAAACTCA 1219
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1139 ACCAAGAGAGGCAATGGCTAAAATCAAGATCCAAGGCTATGACATTCCAGAAAAAACTCA 1198
Query 1220 GATCATGGTCAATGTTTACGCGATAGGACGTGATCCTGACCTCTGGGAGAATCCAGAAGA 1279
|||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 1199 GATCATGGTCAATGTTTACGCGATAGGACGCGATCCTAACCTTTGGGAGAATCCAGAAGA 1258
Query 1280 GTTTAAACCGGAAAGATTCGTTGATAGTTCTGTTGATTATAGAGGACTTAACTTCGAGCT 1339
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1259 GTTTAAACCGGAAAGATTTGTTGATAGTTCTGTTGATTACAGAGGACTTAACTTCGAGCT 1318
Query 1340 TCTACCGTTTGGTTCTGGTAGAAGGATTTGTCCCGGTATGACGATGGGGATCGCGACAGT 1399
| | ||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct 1319 TTTGCCGTTTGGTTCTGGTCGAAGGATTTGTCCCGGTATGACTATGGGAATCGCGACAGT 1378
Query 1400 CGAATTAGGATTGTTGAATTTACTTTACTTCTTTGATTGGGGATTGCCTGAAGGAAGGAC 1459
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CGAATTAGGATTGTTGAATTTGCTTTACTTCTTTGATTGGGGATTGCCTGAAGGAAGGAC 1438
Query 1460 AGTGAAAGATATCGATTTGGAAGAAGAAGGTGCGATTATTATTGGCAAGAAAGTTTCGCT 1519
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1439 GGTGAAAGATATCGATTTGGAAGAAGAAGGTGCGATTATTATTGGCAAGAAAGTTTCTCT 1498
Query 1520 TGAACTTGTGCCTACTCGTCGTCAATGAATCAAAAATATAATCATCTTA 1568
||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1499 TGAACTTGTGCCTACTCGTCGTCAATGAACCAAAAATATAATCATCTTA 1547
> Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227
Length=1413
Score = 106 bits (57), Expect = 6e-22
Identities = 219/295 (74%), Gaps = 20/295 (7%)
Strand=Plus/Plus
Query 228 GGACCAGTGATGCAGCTCCAGTTAGGA-TACGTCCCTCTAGTCGTAATCTCCT-CAAACC 285
||||||||||||| ||||| || ||| | |||||| | ||||| |||| | ||||
Sbjct 178 GGACCAGTGATGCTTCTCCATTTCGGAGT-TGTCCCTGTGGTCGTCTTCTCTTCCAAA-G 235
Query 286 AAGCAGC-AGAAGAAGTTCTCAAAACTCATGACCTAGATTGTTGCAGCCGACCAGAAACC 344
|| |||| | |||||||||||||||||||||||||||| ||||| |||||| || |
Sbjct 236 AAACAGCTA-AAGAAGTTCTCAAAACTCATGACCTAGAGACTTGCACCCGACCT-AAGC- 292
Query 345 ATAGCGTCAAAAACAATATCTTA-C--AACTTCAAAGACATAGGATTCGCTCCTTACGGC 401
| | | | || | | || | |||||||||||||| || ||| ||| |||||
Sbjct 293 -TGGTGGCGAATGGGTTGTTTTCTCGCAACTTCAAAGACATTGGTTTCACTCAGTACGGT 351
Query 402 GAAGAATGG-AGAGCGTTGAGGAAGCTCGCTGTGA-TCGAGCTATTCAG-CTTGAAAAAA 458
||||| ||| | || | ||| ||||| | || | ||||||| || || | ||||||
Sbjct 352 GAAGACTGGCA-AGAGATGAAAAAGCTGG-TGGGGCTCGAGCTCTTTAGTCC-GAAAAAG 408
Query 459 TTCAACTCTTTTAGGTATATAAGAGAAGAAGA-GAATGACTTGTTGGTCAAGAAA 512
|| ||||| |||||||| ||||||||||| | | |||||| |||||||||||
Sbjct 409 CAAAAGTCTTTCAGGTATATCAGAGAAGAAGAAGGA-GACTTGCTGGTCAAGAAA 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65439040910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5