BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26280.1 Length=1712 Score E Sequences producing significant alignments: (Bits) Value Ahg936324 jgi|Araly1|936324|scaffold_500515.1 2231 0.0 Ahg484390 jgi|Araly1|484390|fgenesh2_kg.5__382__AT3G26220.1 1038 0.0 Ahg346986 jgi|Araly1|346986|fgenesh1_pg.C_scaffold_5000378 316 3e-85 > Ahg936324 jgi|Araly1|936324|scaffold_500515.1 Length=1552 Score = 2231 bits (1208), Expect = 0.0 Identities = 1414/1515 (93%), Gaps = 8/1515 (1%) Strand=Plus/Plus Query 19 CAAACCAGAGGAACGACAATAATGGTGAGTCTTCTATCTTTTTTCTTGCTTCTACTCGTC 78 |||||||||||| ||| ||||||||||| | |||||||||| |||||||||||| ||||| Sbjct 1 CAAACCAGAGGATCGAAAATAATGGTGATTTTTCTATCTTTCTTCTTGCTTCTATTCGTC 60 Query 79 CCCATTTTCTTCTTGTTAATCTTCACCAAGAAGATCAAGGAGTC-AAAACAAAATCTTCC 137 ||||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 61 CCCATTTTCTTCTCGTTAATCTTCACCAAGAAGATCAAAGAGTCGAAAAC-AAATCTTCC 119 Query 138 TCCTGGCCCAGCAAAGCTTCCGATCATCGGAAACCTACACCAGCTCCAAGGGTTGCTTCA 197 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TCCTGGCCCAGCAAAACTTCCGATCATCGGAAACCTACACCAGCTCCAAGGGTTGCTTCA 179 Query 198 TAAATGTCTTCACGATCTCTCCAAGAAACACGGACCTGTGATGCATCTCCGTCTAGGGTT 257 || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 180 TAGATGTCTTCACGATCTCTCCAAGAAACACGGACCAGTGATGCATCTCCGTCTAGGGTT 239 Query 258 TGCCCCAATGGTCGTAATTTCATCAAGTGAAGCAGCTGAAGAAGCTCTTAAAACACATGA 317 ||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 240 TGCATCAATGGTCATAATTTCATCGGGTGAAGCAGCTGAAGAAGCTCTTAAAACACATGA 299 Query 318 CCTTGAGTGTTGTTCAAGACCTATCACTATGGCCTCAAGGGTTTTTTCGCGTAACGGTAA 377 ||||||||||||||||||||||| |||||| ||| |||||||||| ||||| |||||||| Sbjct 300 CCTTGAGTGTTGTTCAAGACCTAACACTATCGCCGCAAGGGTTTTCTCGCGGAACGGTAA 359 Query 378 AGACATCGGATTTGGGGTTTACGGTGATGAATGGAGAGAGCTGCGTAAGCTTTCGGTTCG 437 |||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 360 AGACATCGGATTCGGGGTATATGGTGATGAATGGAGAGAGCTGCGTAAGCTTTCTGTTCG 419 Query 438 CGAATTCTTTAGCGTGAAAAAAGTTCAATCCTTCAAGTATATTAGAGAGGAAGAGAATGA 497 |||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||| Sbjct 420 TGAATTCTTTAGCGTGAAAAAGGTTCAATCTTTCAGGTACATTAGAGAGGAAGAGAATGA 479 Query 498 CTTGATGATCAAGAAACTGAAAGAATTGGCTTCGAAGCAATCTCCGGTGGATTTGAGCAA 557 ||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 480 CTTGATGGTCAAGAAACTGAGAGAATTGGCTTCGAAGCAATCTCCGGTGGACTTGAGCAA 539 Query 558 AATCCTCTTTGGTCTCACTGCGAGTATCATATTCAGAACCGCCTTTGGACAAAGTTTCTT 617 | ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 540 AGCCCTCTTTGGCCTCACCGCGAGTATCATATTCAGAACCGCCTTTGGACAGAGTTTCTA 599 Query 618 TGATAACAAGCATGTCGATCAGGAAAGCATCAAAGAACTGATGTTTGAATCTCTGAGCAA 677 ||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||||| Sbjct 600 TGAGAACAAGCATATCGATCAAGAAAGGATCAAAGAACTGATGTTTGAATCTCAGAGCAA 659 Query 678 TATGACTTTTAGATTCTCTGATTTTTTCCCTACTGCTGGTCTTAAATGGTTTATAGGCTT 737 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TATGACTTTCAGATTCTCTGATTTTTTCCCTACTGCTGGTCTTAAATGGTTTATAGGCTT 719 Query 738 TGTGTCAGGCCAACATAAGAGGCTTTACAACGTCTTCAACAGGGTTGATACtttttttAA 797 |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || Sbjct 720 TGTGTCAGGCCAACATCAGAGGCTTTACAACGTCTTCAACAGGGTTGACACTTTTTTCAA 779 Query 798 TCATATAGTTGATGATCATCACTCGAAGAAAGCAACTCAAGATCGTCCTGATATGGTCGA 857 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 780 TCATATAGTTGATGATCATCACTCGAAGAAACCAACTCAAGATCGTCCTGATATGGTCGA 839 Query 858 CGCTATCTTAGATATGATAGATAATGAACAACAATATGCATCTTTCAAGCTCACCGTTGA 917 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 840 CGCTATCTTAGATATGATAGATAATCAACAACAATATGCATCTTTCAAGCTCACCGTTGA 899 Query 918 TCATCTCAAAGGAGTCCTCTCAAATATATATCACGCTGGAATTGACACAAGCGCCATCAC 977 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 900 TCATCTCAAGGGAGTCCTCTCAAATATATATCACGCTGGAATAGACACAAGCGCCATCAC 959 Query 978 CTTGATTTGGGCGATGGCAGAGCTCGTTAGAAACCCGCGGGTAATGAAGAAA-GCTCAAG 1036 |||||||||||||||||||||||||||||||||| | || ||||| ||| | ||||| Sbjct 960 AATGATTTGGGCGATGGCAGAGCTCGTTAGAAACCCTAGAGTGATGAA-AAAGGTTCAAG 1018 Query 1037 ACGAGATCCGAACTTGCATTGGAATCAAACAGGAAGGAAGAATCATGGAAGAAGATCTTG 1096 | || |||| |||||| |||||||||||||| ||||||||||| || ||||||||||||| Sbjct 1019 AAGAAATCCAAACTTGTATTGGAATCAAACAAGAAGGAAGAATTATTGAAGAAGATCTTG 1078 Query 1097 ATAAGCTTCAATACTTGAAGCTTGTGGTGAAAGAAACCTTAAGACTACACCCAGCAGCTC 1156 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 AGAAGCTTCAATACTTGAAGCTTGTGGTGAAAGAAACCTTAAGACTACACCCAGCAGCTC 1138 Query 1157 CTCTTTTACTTCCTCGAGAAACAATGGCTGATATCAAGATTCAAGGCTACGACATTCCTC 1216 ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1139 CTCTTTTACTTCCAAGAGAAACAATGGCTGATATCAAGATTCAAGGCTATGACATTCCTC 1198 Query 1217 AGAAAAGAGCT-CTTCTT-GTTAATGCATGGTCTATAGGACGAGATCCGGAATCCTGGAA 1274 ||||| | || ||| || ||||| || ||||| ||||||||||||||| ||| ||||| Sbjct 1199 GGAAAACA-CTTCTT-TTCGTTAACGCGTGGTCGATAGGACGAGATCCGAAATACTGGAG 1256 Query 1275 AAATCCTGAAGAGTTTAACCCGGAGAGGTTTATTGATTGTCCTGTGGATTACAAGGGACA 1334 ||| ||||| ||||||||||||||||||||| | ||||||| |||||||||||| ||||| Sbjct 1257 AAACCCTGAGGAGTTTAACCCGGAGAGGTTTCTCGATTGTCATGTGGATTACAAAGGACA 1316 Query 1335 TAGCTTTGAGTTGTTACCATTTGGTTCTGGTCGGAGAATTTGTCCAGGAATAGCTATGGC 1394 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1317 TAGCTTTGAGTTGTTACCATTTGGTTCTGGTCGGAGGATTTGTCCAGGAATAGCTATGGC 1376 Query 1395 GATCGCAACCATTGAATTGGGGCTCTTGAATTTGCTCTACTTCTTTGATTGGAATATGCC 1454 ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| Sbjct 1377 GATCGCAACCATTGAATTGGGACTCTTGAATTTGCTTTACTTCTTTGACTGGAAAATGCC 1436 Query 1455 TGAGAAGAAGAAAGATATGGACATGGAAGAAGCTGGTGATCTCACTGTTGATAAGAAAGT 1514 |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| || Sbjct 1437 TGAGGAGAAGAAAGATATGGACATGGAAGAAGCTGGTGATGTCACTGTTGTTAAGAAGGT 1496 Query 1515 TCCTCTTGAGCTTCT 1529 ||||||||||||||| Sbjct 1497 TCCTCTTGAGCTTCT 1511 > Ahg484390 jgi|Araly1|484390|fgenesh2_kg.5__382__AT3G26220.1 Length=1599 Score = 1038 bits (562), Expect = 0.0 Identities = 1181/1471 (80%), Gaps = 78/1471 (5%) Strand=Plus/Plus Query 112 ATCAAGGAGTCAAAACAAAATCTTCCTCCTG-GCCCAGC-AAAGCTTCCGATCATCGGAA 169 ||||| || || |||| |||||||||||| | ||||| | |||||||| |||||||||| Sbjct 35 ATCAAAGACTCGAAACGAAATCTTCCTCC-GAGCCCA-CTGAAGCTTCCAATCATCGGAA 92 Query 170 ACCTACACCAGCTCCAAGGGTTGCTTCATAAATGTCTTCACGATCTCTCCAAGAAACACG 229 ||||| ||||||| | ||| ||| |||| | |||||||||||||||||||||||| |||| Sbjct 93 ACCTATACCAGCTTCGAGGATTGTTTCACAGATGTCTTCACGATCTCTCCAAGAAGCACG 152 Query 230 GACCTGTGATGCATCTCCGTCTAGGGTTTGCCCCA-ATGGTCGTAATTTCATC-AAGTGA 287 |||| ||| ||| |||||||||||| |||| | | ||||| || || ||||| || || Sbjct 153 GACCCGTGCTGCTTCTCCGTCTAGGTTTTG-TCGATATGGTTGTGATCTCATCGAA-AGA 210 Query 288 AGCAGCTGAAGAAGCTCTTAAAACACATGACCTTGAGTGTTGTTCAAGACCTATCACTAT 347 ||||||||||||| ||| ||| ||||||||||||||||||| | ||||||| || | Sbjct 211 AGCAGCTGAAGAAATTCTCAAAGTACATGACCTTGAGTGTTGTACCAGACCTAAGACCAA 270 Query 348 GGCCTCAAGGGTTTTTTCGCGTAACGGTAAAGACATCGGATTTGGGGTTTACGGTGATGA 407 |||||| || |||||| ||||||||||||||| |||| | ||||| || | Sbjct 271 CGCCTCATCAAAATTCTCGCGTGACGGTAAAGACATCGCCTTTGCGCCATACGGGGAAGT 330 Query 408 ATGGAGAGAGCTGCGTAAGCTTTCGGTTCGCGAA-TTCTTT-AGCGTGAAAAAAGTTCAA 465 | || || ||||||||||||| ||| | || || ||| ||| | |||| |||| | Sbjct 331 TTTTAGGGAATTGCGTAAGCTTTCCTTTCTC-AAGTT-TTTCAGCACGCAAAAGGTTCGA 388 Query 466 TCCTTCAAGTATATTAGAGAGGAAGAGAATGACTTGATGATCAAGAAACTGAAAGAATTG 525 || || | ||| || ||||||||||||||||| |||||| ||||||||||||| |||| Sbjct 389 TCTTTTAGGTACATCAGAGAGGAAGAGAATGATTTGATGGTCAAGAAACTGAAGGAATCA 448 Query 526 GCTTC-GAAGCAA-TCTCCGGTGGATTTGAGCAAAATCCTCTTTGGTCTC-ACT-GCGAG 581 || || || | || | | |||||||||||| ||| | |||| | || | | | ||| Sbjct 449 GC-TCAGACG-AAGAATACAGTGGATTTGAGCCAAA--CACTTTTCTATCTAGTGGGGAG 504 Query 582 TATCATATTCAGAACCGCCTTTGGACAAAGTTTCTTTGATAACAAGCATGTCGAT-CAGG 640 |||||||||||| | ||||||| ||| | || || |||||||||||| || || Sbjct 505 TATCATATTCAGGGCTACCTTTGGGCAACGGTTAGACGAGAACAAGCATGTCAATAAAGA 564 Query 641 AAAGCATCAAAGAACTGATGTTTGAATCTCTGAGCAA-TAT-GA-CTTTTAG-ATTCTCT 696 |||| || ||||||| ||||||| | || || || | | || || | || | |||| Sbjct 565 AAAG-ATTGAAGAACTCATGTTTG-AGGTC-CAGAAAGT-TGGATCTCTAAGCA-GCTCT 619 Query 697 GATTTTTTCCCTACTGCTGGTCTT-AAATGGTTTATAGG-CTTTGTGTCAGGCCAACATA 754 ||| |||| || |||||||| || ||||||||| || |||||||||||| | ||||| Sbjct 620 GATCTTTT-CC--CTGCTGGT-TTGGGATGGTTTAT-GGACTTTGTGTCAGGACGACATA 674 Query 755 AGAGGCTTTACAACGTCTTCAACAG-GGTTGATACtttttttAATCATATAGTTGATGAT 813 ||| ||| |||| || ||| | | |||||||||||| | |||||| || |||||| | Sbjct 675 AGACACTTCACAAAGTTTTCGTC-GAGGTTGATACTTTGCTAAATCATGTAATTGATGGT 733 Query 814 CA--T---CACT-C-GAAG--AAAGCAACTCAAGATCGTCCTGATATGGTCGACGCTATC 864 || | | | | |||| ||| ||| ||||||||| || ||||| ||||| | ||| Sbjct 734 CACTTGAAGAATCCTGAAGAAAAAACAAATCAAGATCGCCCCGATATCATCGACTCGATC 793 Query 865 TTAGATA-TGATAG-ATAATGAACAACAATATGC-ATCTTTCAAGCTCACCGTTGATCAT 921 ||||||| | || | |||| || ||||| || | ||||||||| |||||| |||||||| Sbjct 794 TTAGATACT-AT-GTATAAACAAGAACAAGAT-CAATCTTTCAAACTCACCATTGATCAT 850 Query 922 CTCAAAGGAGTCCTCTC-AAATATATATCACGCTGGAATTGACACAAGCGCCATCACCTT 980 ||||||||| || || | ||||||||||| |||||| | |||||||| ||||||||| | Sbjct 851 CTCAAAGGAATCATC-CAAAATATATATCTTGCTGGAGTAGACACAAGTGCCATCACCAT 909 Query 981 GATTTGGGCGATGGCAGAGCTCGTTAGAAACCCGCGGGTAATGAAGAAAGCTCAAGACGA 1040 ||||||||| ||||||||||| |||| |||||||||||| |||||||||| |||||| || Sbjct 910 GATTTGGGCAATGGCAGAGCTTGTTAAAAACCCGCGGGTGATGAAGAAAGTTCAAGATGA 969 Query 1041 GATCCGAACTTGCATTGGAATCAAACAGGAAGGA-AGAATC-ATGGAAGAAGATCTTGAT 1098 ||||||||| ||||||||||||||||| ||||| |||||| | |||||||||| | ||| Sbjct 970 GATCCGAACATGCATTGGAATCAAACA-AAAGGAGAGAATCGA-GGAAGAAGATGTCGAT 1027 Query 1099 AAGCTTCAATACTTGAAGCTTGTGGTGAAAGAAACCTTAAGACTACACCCAGCAGCTCCT 1158 |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1028 AAGCTTCAGTACTTGAAGCTTGTGATCAAAGAAACCTTAAGACTACACCCAGCAGCTCCT 1087 Query 1159 CTTTTACTTCCTCGAGAAACAATGGCTGATATCAAGATTCAAGGCTACGACATTCCTCAG 1218 ||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||| | Sbjct 1088 CTTTTACTTCCAAGAGAGACAATGGTTGATATCAAGATTCAAGGCTACGACATACCTCGG 1147 Query 1219 AAAAG-AGCTCTTCTTG-TTAATGCATGGTCTATAGGACGAGATCCG-GAA-TCCTGGAA 1274 |||| | |||| ||| ||||| ||||||| ||||||||| | || ||| || ||| | Sbjct 1148 AAAACCAT-TCTT-TTGGTTAATACATGGTCGATAGGACGA-ACCCCTGAACTC-TGGGA 1203 Query 1275 AAATCCTGAAGAGTTTAACCCGGAGAGGTTTATTGATTGTCCTGTGGATTACAAGGGACA 1334 ||| || |||||||||||||| ||||| ||||| |||||||||||||||||||| ||| | Sbjct 1204 AAACCCCGAAGAGTTTAACCCAGAGAGATTTATCGATTGTCCTGTGGATTACAAAGGAAA 1263 Query 1335 TAGCTTTGAGTTGTTACCATTTGGTTCTGGTCGGAGAATTTGTCCAGGAATAGCTAT-GG 1393 |||||||||| ||||||||||||||||||||||||| || |||||||| |||||| | || Sbjct 1264 TAGCTTTGAGATGTTACCATTTGGTTCTGGTCGGAGGATATGTCCAGGGATAGCTTTTGG 1323 Query 1394 CGATCGCAACCATTGAATTGGGGCTCTTGAAT-TTGCTCTACTTCTTTGATTGGA-ATAT 1451 || || ||| |||||||||| || ||||| || || |||||||||||||||| || | Sbjct 1324 T-ATAGCGACCGTTGAATTGGGACTATTGAACCTT-CTTTACTTCTTTGATTGGAGAT-T 1380 Query 1452 GCCTGAGAAGAAGAAAGATATGGACATGGAAGAAGCTGGTGAT-CTCACTGTTGAT-AAG 1509 ||||||| || | |||||||| ||||||||||| ||||||||| | ||| || || ||| Sbjct 1381 GCCTGAGGAGGATAAAGATATTGACATGGAAGAGGCTGGTGATGC-CACCATT-ATTAAG 1438 Query 1510 AAAGTTCCTCTTGAGCTTCTGCCAGTTATTC 1540 |||||||||||||||||| | ||| |||||| Sbjct 1439 AAAGTTCCTCTTGAGCTTGTCCCAATTATTC 1469 > Ahg346986 jgi|Araly1|346986|fgenesh1_pg.C_scaffold_5000378 Length=1272 Score = 316 bits (171), Expect = 3e-85 Identities = 233/262 (89%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 1284 AGAGTTTAACCCGGAGAGGTTTATTGATTG-TCCTGTGGATTACAAG-GGACATAGCTTT 1341 |||||||| ||||||||||||||| || || |||| |||||||| || ||||| || ||| Sbjct 891 AGAGTTTATCCCGGAGAGGTTTATCGA-TGATCCTATGGATTAC-AGAGGACAGAGTTTT 948 Query 1342 GAGTTGTTACCATTTGGTTCTGGTCGGAGAATTTGTCCAGGAAT-AGCTATGGCGATCGC 1400 ||| ||||||||||||||||||| |||||||| ||||||||||| || | ||| ||| || Sbjct 949 GAGATGTTACCATTTGGTTCTGGCCGGAGAATGTGTCCAGGAATGAGTTTTGG-GATTGC 1007 Query 1401 AACCATTGAATTGGGGCTCTTGAATTTGCTCTACTTCTTTGATT-GGAATATGCCTGAGA 1459 ||||||||||| || |||||||| ||||| ||||| ||||||| ||||| |||||||| Sbjct 1008 GACCATTGAATTAGGACTCTTGAACTTGCTTTACTTTTTTGATTGGGAAT-TGCCTGAGG 1066 Query 1460 AGAAGAAAGATATGGACATGGAAGAAGCTGGTGATCTCACTGTTGATAAGAAAGTTCCTC 1519 ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| Sbjct 1067 AGAAGAAAGATATGGACATGGAAGAAGCTGGTGATGTCATTGTTGTTAAGAAAGTTCCTC 1126 Query 1520 TTGAGCTTCTGCCAGTTATTCG 1541 |||||||||||||||||||||| Sbjct 1127 TTGAGCTTCTGCCAGTTATTCG 1148 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64220153070 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5