BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26400.1 Length=1680 Score E Sequences producing significant alignments: (Bits) Value Ahg484402 jgi|Araly1|484402|fgenesh2_kg.5__394__AT3G26400.1 2540 0.0 Ahg920166 jgi|Araly1|920166|scaffold_101447.1 588 5e-167 > Ahg484402 jgi|Araly1|484402|fgenesh2_kg.5__394__AT3G26400.1 Length=1666 Score = 2540 bits (1375), Expect = 0.0 Identities = 1593/1692 (94%), Gaps = 39/1692 (2%) Strand=Plus/Plus Query 1 ATGTCGAAAGCTTGGGGTGGAATTGGAATTGGAGCTTGGGCTGATGAAGCAGAGCGTGCC 60 ||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGCGAAACCTTGGGGTGGAATTGGAATTGGGGCTTGGGCTGATGAAGCAGAGCGTGCC 60 Query 61 GATGAAGAACAAGCGGCGGAAGCTACTGCTGCGACGGCGGATACACAGAGTTTTCCTAGC 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATGAAGAGCAAGCGGCGGAAGCTACTGCTGCGACGGCGGATACACAGAGTTTTCCTAGC 120 Query 121 CTGAGAGAGGCTGCTGCTGCGACTGCGACTAGTGGTAAGTCTAGGAAGATGAAGAAGATG 180 |||||||| | |||||||||||||| |||| || ||||||||||||||||||||||||| Sbjct 121 CTGAGAGA-G--GCTGCTGCGACTGCTACTAATGCTAAGTCTAGGAAGATGAAGAAGATG 177 Query 181 AGTTTATCTGAGTTTACTACAGGTGCTTATACAGCACCTGGAGGTAGAAACTCTGTTGGA 240 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 178 AGTTTATCTGAGTTTACTACAGGTTCTTATACAGCACCTGGCGGTAGAAACTCTGTTGGA 237 Query 241 TTGACTCAGCAAGAGATTCTTCAATTACCTACTGGTCCTAGACAACGTTCCGAGGAGGAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 238 TTGACTCAGCAAGAGATTCTTCAATTACCTACTGGTCCTAGACAACGTTCTGAGGAGGAA 297 Query 301 ATGCAACCTGGTCGTTTAGGCGGTGGGTTTTCATCTTATGGTGGTCGTTCTGGTGGAAGA 360 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ATGCAACCTGGTCGATTAGGCGGTGGGTTTTCATCTTATGGTGGTCGTTCTGGTGGAAGA 357 Query 361 ATTGGGAGAGATCGAGATGATTCTGATGGCTCTTGGAgtggtggtggtggtggtggtggA 420 || |||||||||||||||||||||||||| || | ||| |||||||||||||| ||| Sbjct 358 ATGGGGAGAGATCGAGATGATTCTGATGGGTC-T----TGG-GGTGGTGGTGGTGGAGGA 411 Query 421 AGGAGACCTTATGGTGGTGGATTTGATGATGATAGGAGGGGGAATCAGTCTAGGGTTTCG 480 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 412 CGGAGACCTTATGGTGGTGGATTTGATGATGATAGGAGGGGAAATCAGTCTAGGGTTTCA 471 Query 481 GATTTTCCTCAACCTTCTAGAGCTGATGAGGTTGATGATTGGGGGAAAGAGAAGAAACCA 540 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 472 GATTTTGCTCAACCTTCTAGAGCTGATGAGGTTGATGATTGGGGGAAAGCGAAGAAACCA 531 Query 541 CTTCCTTCTTTTGATCAAGGACGACAAGGTCGTTACAgtggcgatggtggtggttttgga 600 |||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| Sbjct 532 CTTCCTTCTTTTGATCAAGGACGACAAGGTCGTTACGGTGGCGGTGGAGGTGGTTTTGGA 591 Query 601 ---ggtggtggaagtggttttggaggcggtggt-g--gtgg---tgga---ggtggaggg 648 |||||||||||||||||||||||||||||| | |||| |||| ||||| || Sbjct 592 GGCGGTGGTGGAAGTGGTTTTGGAGGCGGTGGTGGAAGTGGTTTTGGAGGCGGTGGTGGA 651 Query 649 tTATCTAGAGCTGATGATGTTGATAATTGGGGTGCAGGGAAAAGGCAAGCACCGGTTAGA 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 TTATCTAGAGCTGATGATGTTGATAATTGGGGTGCAGGGAAAAGGCAAGCACCGGTTAGA 711 Query 709 TCATCTACGTTTGGGTCGAGTTTTGGTGATTCAGGTCAGGAAGAACGTCGTCGTTTGGTT 768 |||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||| Sbjct 712 TCATCTACATTTGGGTCAAGTTTTGGTGATTCAGTTCAGGAGGAACGTCGTCGTTTGGTT 771 Query 769 TTGGAACCAAGAAAGGTTGAGTCAGGAG-GAAGTGAGACTCCACCTGTTGTTGAGAAGAC 827 ||||||||| | |||||||| ||||||| | ||||| |||||| ||||| |||||||||| Sbjct 772 TTGGAACCACGGAAGGTTGAATCAGGAGCG-AGTGAAACTCCAACTGTTATTGAGAAGAC 830 Query 828 GAGTAAGCCGAATCCATTTGGGGCAGCTAGACCGAGGGAGGATGTTTTGGCGGAGAAAGG 887 ||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 831 GAGTAAGCCTAACCCGTTTGGAGCAGCTAGACCGAGGGAGGATGTTTTGGCGGAGAAAGG 890 Query 888 TTTGGATTGGAAGAAGATTGACTCAGAGATTGAGGCTAAGAAAGGAAGTTCTCAAACGAG 947 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 891 TTTGGATTGGAAGAAGATTGACTCAGAGATTGAGGCTAAGAAAGGAGGTTCTCAAACGAG 950 Query 948 TAGGCCAACGAGTGCACATTCTAGTAGACCTTCTAGTGCTCAATCTAACAGGTCTGAGAG 1007 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 951 TAGGCCAACGAGTGCACATTCGAGCAGACCTTCTAGTGCTCAATCTAACAGGTCTGAGAG 1010 Query 1008 TTCAGGATTGAATAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCAAA 1067 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1011 TTCAGGGTTGAATAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGCGATGCGAA 1070 Query 1068 GCCTCGAGAAGTGTTGTTAGAGGAACAAGGGAAGGATTGGCGTAAGATGGATTTGGAACT 1127 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1071 GCCTCGAGAAGTGTTGCTAGAGGAACAAGGGAAGGATTGGCGTAAGATGGATATGGAACT 1130 Query 1128 CGAGCATCGCAGGGTTGACAGGCCTgaaacagaagaagagaagatgttgaaagaagagat 1187 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1131 CGAGCATCGCAGGGTTGACAGGCCTGAAACAGAAGAAGAAAAGATGTTGAAAGAAGAGAT 1190 Query 1188 tgaagagctaaggaaaaaactcgagaaggaaTCCGTTGCTCCAGAGATCAAGGAATCTGA 1247 |||||| | |||||||||||||||| || ||| |||||||||||||| Sbjct 1191 TGAAGAACAAAGGAAAAAACTCGAG-------CC--------AGATATCAAGGAATCTGA 1235 Query 1248 TCAAGAACCTGGCAGTAATAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGA 1307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1236 TCAAGAACCTGGCAGTAATAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGA 1295 Query 1308 GAAAGATCTGGAAATACTAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGCAGAAACC 1367 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1296 GAAAGATTTGGAAATACTAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGCAGAAACC 1355 Query 1368 AGTTGAGAGGCCCGGGTCTGGTGCAGGTAGAACCGGAACATATTCAGAAAGAACACATTC 1427 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1356 AGTTGAGAGGCCCGGGTCTGGTGCAGGCAGAACCGGAACATATTCAGAAAGAACACATTC 1415 Query 1428 CCGGGCTGGCTCAATTGATGAAACCAGGAGTTTTGAATCTACAGAGAGACCCAGATCACG 1487 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1416 CCGGGCTGGATCAATTGATGAAACCAGGAGTTTTGAATCCACAGAGAGACCCAGATCACG 1475 Query 1488 TGGTGCCGTCGATGCCTGGGTTAGACCAGCCAATGAGCAGCGAAGAAACTTTCAAGGAAC 1547 ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| Sbjct 1476 TGGTGCCGTCGATGCCTGGGTTAGACCAGCCGATGATCAGCGAAGAAACTTCCAAGGAAG 1535 Query 1548 CAAAGAGCGCGGATTCTTCAGCAACAGGTCTTCCTCTAGGGAAGGATGGTAAGAAGAAAA 1607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1536 CAAAGAGCGCGGATTCTTCAGCAACAGGTCTTCCTCTAGGGAAGGATGGTAAGAAGTAAA 1595 Query 1608 CGAAGAACAACCAAATGTGGGATATCTTTAACTACTACTACACAGTTCCCAGATTTTGAA 1667 ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| Sbjct 1596 CGAAGAACAACCAAATGTGGGATATGTTTAACTACT-CTACTCAGTTCCCAGATTTTGAA 1654 Query 1668 GAAGACTTAGAG 1679 |||||||||||| Sbjct 1655 GAAGACTTAGAG 1666 > Ahg920166 jgi|Araly1|920166|scaffold_101447.1 Length=1701 Score = 588 bits (318), Expect = 5e-167 Identities = 683/853 (80%), Gaps = 50/853 (6%) Strand=Plus/Plus Query 744 TCAGGAAGAACGTCGTCGT-TTGGTTTTGGAACCAAGAAAGGTTGAGT-CAGGAG-GAAG 800 |||||| || ||||||||| || || ||||||||| |||||||||| | |||||| | || Sbjct 816 TCAGGAGGAGCGTCGTCGTCTT-GTATTGGAACCACGAAAGGTTGA-TGCAGGAGTG-AG 872 Query 801 TGAGACTCCACCTGTTGTTGAGAAGACGAGTAAGCCGAATCCATTTGGGGCAGCTAGACC 860 ||| |||||| ||| || | ||||||||||||||| || |||||||| || |||||||| Sbjct 873 TGAAACTCCAACTGCTG--G-GAAGACGAGTAAGCCAAACCCATTTGGAGCTGCTAGACC 929 Query 861 GAGGGAGGATGTTTTGGCGGAGAAAGGTTTGGATTGGAAGAAGA-TTGACTCAGAGATTG 919 ||| ||| | ||||||||||||||||| ||||| |||||||| | ||||||| || |||| Sbjct 930 GAGAGAGCAAGTTTTGGCGGAGAAAGGCTTGGACTGGAAGAA-ACTTGACTCGGATATTG 988 Query 920 AGGCTAAGAAAGGAAGTTCTCAAACGAGTAGGCCAACGAGTGCACATTCTAGTAGACCTT 979 |||| || ||||| | ||||| || || ||| |||| || || || || ||||| | Sbjct 989 AGGCCAA-AAAGG--G---ACAAACAAGCAGACCATCGAGCGCGCAATCCAGCAGACCAT 1042 Query 980 CTAGTGCTCAATCTAACAGGTCTGAGAGTTCAGGATTG---AA--T----AATGTGGTGA 1030 | |||||||||||||||||||| |||||||||| |||| || | |||||||||| Sbjct 1043 CAAGTGCTCAATCTAACAGGTCCGAGAGTTCAGCATTGAACAATGTGGAGAATGTGGTGA 1102 Query 1031 AACCGAGACCAAAGGTGAATCCTTTTGGCGATGCAAAGCCTCGAGAAGTGTTGTTAGAGG 1090 ||||||||||||||||||||||||| || |||||||| ||| | ||||| ||| | |||| Sbjct 1103 AACCGAGACCAAAGGTGAATCCTTTCGGTGATGCAAAACCTAGGGAAGTATTGCTGGAGG 1162 Query 1091 AACAAGGGAAGGATTGGCGTAAGATGGATT-TGGAACTCGAGCATCGCAGGGTTGACAGG 1149 |||||||||| |||||||| ||||| |||| | ||||||||||||||||||||||||||| Sbjct 1163 AACAAGGGAAAGATTGGCGCAAGATTGATTCT-GAACTCGAGCATCGCAGGGTTGACAGG 1221 Query 1150 CCTgaaacagaagaagagaagatgttgaaagaagagattgaagagctaaggaaaaaactc 1209 ||||||||||||| ||||| ||||||||| |||||||| ||||| ||| |||| |||||| Sbjct 1222 CCTGAAACAGAAGGAGAGAGGATGTTGAAGGAAGAGATCGAAGAACTACGGAAGAAACTC 1281 Query 1210 gagaaggaaTCCG-T-T-GCTCCAGAGATCAAGGAATCTGATCAAGAA-CCTGGCAGTAA 1265 ||||||||| | | | | || || |||| |||||||||| | || ||| ||| |||||| Sbjct 1282 GAGAAGGAAGCAGCTATTGCACCTGAGAGCAAGGAATCTCAACAGGAATCCTA-CAGTAA 1340 Query 1266 TAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGAGAAAG-ATCTGGAAATAC 1324 | | || || || |||| || | ||||| | |||||| |||| | ||||| ||| Sbjct 1341 TCAC---CA-AA--ATCTACCGGATCTCATACGCGAGAAAGA-AAAGGACCTGGACTTAC 1393 Query 1325 TAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGC-A-GAAACCAGTTGAGAGGCCCGG 1382 | | ||||||| |||||||||||||||||||||||| | || | |||||||||||| || Sbjct 1394 TGATCCGTGAACTGGACGACAAAGTCAGGTTCAGGCCACGAG-C-AGTTGAGAGGCCTGG 1451 Query 1383 GTCTGGTGCAGGTAGAACCGGAACATATTCAGAAAGAACACATTCCCGGGCTGGCTCAAT 1442 || ||||| | ||| |||| | |||||||||||| | ||||| |||||||| ||||| Sbjct 1452 ATCCAGTGCAAGCAGAGCCGGTTCCTATTCAGAAAGACCTCATTCACGGGCTGGATCAAT 1511 Query 1443 TGATGAAACCAGGAGTTTTGAATCTACAGAGAGACCCAGATCACGTGGTGCCGTCGATGC 1502 ||||| | |||| | ||||| | || ||||| ||||||||||| | | |||| Sbjct 1512 CGATGAGTCTAGGAACGTCGAATCCATGGAAAGACCTAGATCACGTGGCACAGGCGATAA 1571 Query 1503 CTGGGTTAGACCAGCCA-ATGAGCAGCGAAGAAACTTTCAAGGAACCAAAGAGCGCGGAT 1561 ||| ||||||| | |||| | | ||||||||| ||||||| ||| || || |||| Sbjct 1572 TTGGCCAAGACCAGT-AGATGATC-G--AAGAAACTTCCAAGGAAGCAAGGAACGTGGAT 1627 Query 1562 TCTTCAGCAACAG 1574 ||||||||||||| Sbjct 1628 TCTTCAGCAACAG 1640 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63001265230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5