BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26440.1 Length=1532 Score E Sequences producing significant alignments: (Bits) Value Ahg322779 jgi|Araly1|322779|fgenesh1_pm.C_scaffold_5000323 1807 0.0 Ahg920165 jgi|Araly1|920165|scaffold_101446.1 734 0.0 Ahg481676 jgi|Araly1|481676|fgenesh2_kg.4__736__AT2G28310.1 281 8e-75 > Ahg322779 jgi|Araly1|322779|fgenesh1_pm.C_scaffold_5000323 Length=1215 Score = 1807 bits (978), Expect = 0.0 Identities = 1140/1215 (94%), Gaps = 24/1215 (2%) Strand=Plus/Plus Query 123 ATGGCAAACAGAGCAGACAACTCAATGCGTTGTTCAAATAGTAAGAAACCGAATGACGGT 182 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGCAAACAGAGCAGACAACTCAATACGTTGTTCAAATAGTAAAAAACCGAATGACGGT 60 Query 183 ATGATGCTCGTAATATCGATTTTCGCGGGAATAGTTATCGGATTTTTATTAGGCATATCT 242 ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 61 ATGATGCTCGTAATATCAATTTTTGCGGGAATAGTTATCGGATTTTTGTTAGGAATATCT 120 Query 243 TTCCCTACATTGTCACTAACTAAGATGAATTTTCCATCAAGCATTCTTCCTTCTGTTGCT 302 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 TTTCCTACATTGTCACTAACTAAGATGAATTTTCCATCAAGCATACTTCCTTCTGTTGCT 180 Query 303 ACTGTCTACATAGAAAATGAGAAACCGGAGAAATCATCTAAGACGAGTTCACAAAACGA- 361 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 181 ACTGTTTACATAGAAAACGAGAAACCGGAGAAATCATCTAAGACGAGTTCACAAAATGAG 240 Query 362 --AAGTGATGCATCACATCATCAT-A---A-------G----------ATTTGGGTTCCA 398 ||||||||| ||||||||||| | | | |||||||||||| Sbjct 241 TTTAGTGATGCAGCACATCATCATAAGGCATGTTTTTGTTTCTCCCTTATTTGGGTTCCA 300 Query 399 TCGAATCCTCGAGGTGCAGAGATGTTACCTCCAAGTTTTGTTGCAGCCGAATCGGATTTT 458 ||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||| Sbjct 301 TCGAATCCTCGCGGTGCAGAGATGTTGCCTCCAAGTTTTGTTGCAACCGAATCAGATTTT 360 Query 459 TACTTACGAAGATTGTGGGGATTGCCTAAAGATGATTTACCAGTGGTGAAGCCTAAGTAT 518 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 361 TACTTACGAAGATTGTGGGGATTGCCTAAAGATGATTTACCAGTGGTGAAACCTAAGTAT 420 Query 519 CTTGTTGCTTTTACTGTTTCTTATGAACAAAGAAAAAACATCGATGCTTGTGTCAAAAAA 578 || |||||||||||||||||||||||||| |||||||||| |||||||| |||| ||| Sbjct 421 CTAGTTGCTTTTACTGTTTCTTATGAACAGCGAAAAAACATTGATGCTTGCATCAAGAAA 480 Query 579 TTCTCAGATAACTTCACCATTGTTCTGTTTCATTACGATGGAAAAACCTCGGAGTATGAT 638 ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| Sbjct 481 TTCTCAGATAACTTCACTATCGTTCTGTTTCATTACGATGGAAAAACCTCGGAATATGAT 540 Query 639 GAATTTGAATGGTCTAAACGGGCGATACACGTCAGTGTACCTAAGCAAACCAAGTGGTGG 698 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 541 GAATTTGAATGGTCTAAACGGGCGATACACGTGAGTGTACCTAAGCAAACCAAGTGGTGG 600 Query 699 TATGCTAAAAGGTTTCTGCATCCTGATATCATAGCACCATATGAATATATATTCATTTGG 758 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 601 TATGCTAAAAGGTTTCTGCATCCTGATATCATAGCACCGTATGAATATATATTCATTTGG 660 Query 759 GATGAAGATCTTGGCGTTGAAAACTTCGACGCAGAAGAGTACATCAAGATTGTGAATAAG 818 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 661 GATGAAGATCTTGGTGTTGAAAACTTCGACGCAGAAGAGTACATCGAGATTGTGAAGAAG 720 Query 819 CATGGTCTAGAAATATCGCAACCCGCTGTGGAATCAAGAAAATCAATCACATGGAAGATA 878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CATGGTCTAGAAATATCGCAACCCGCTGTGGAATCAAGAAAATCAATCACATGGAAGATA 780 Query 879 ACAAAGAGAATACCCGGAATCGAAGTTCACAAAGAAGTCGAAGAGAAACCAGGCCGCTGC 938 ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 781 ACAAAGAGAATACCCAGAAGCGAAGTTCACAAAGAAGTCGAAGAGAAACCAGGCCGCTGT 840 Query 939 AATGACCCTCACCTACCTCCTTGTGCAGGGTTTATAGAGATTATGGCTCCAGTTTTCTCT 998 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AATGACCCTCACCTACCTCCTTGTGCAGGGTTTATAGAGATTATGGCTCCAGTTTTCTCA 900 Query 999 AGAGAGGCATGGCGTTGTGTGTGGCATATGATTCAGAATGACTTGGTTCACGGTTGGGGT 1058 ||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 901 AGAGATTCATGGCGCTGCGTGTGGCATATGATACAGAATGACTTGGTTCACGGTTGGGGT 960 Query 1059 CTTGACTTTGCGCTAAGAAAATGCGTCGAGCCTGCACATGAGAAGATTGGTGTTGTGGAT 1118 ||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||| Sbjct 961 CTTGACTTTGCGCTAAGAAAATGTGTTGAGCCTGCACATGAGAAGATTGGTATTGTGGAT 1020 Query 1119 TCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGGGAACCGCGCAGGAA 1178 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1021 TCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGAAGCCAGGGAACTGCGCAGGAA 1080 Query 1179 GGGAAAACCGCGTTCCAAGGGGTAAGAGAGAGATGTAAACGGGAATGGACAATGTTTCAG 1238 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GGGAAATCCGCGTTCCAAGGGGTAAGAGAGAGATGTAAACGGGAATGGACAATGTTTCAG 1140 Query 1239 AAAAGAATGACCCGATCAGAGCAGAAGTATCTGAAAGAAATTGCATCTGCCTCTTCAAAC 1298 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 AAAAGAATGACGCGATCAGAGCAGAAGTATCTGAAAGAAATTGCATCTGCCTCTTCAAAC 1200 Query 1299 TCTACACGTACTTAA 1313 |||||| ||||||| Sbjct 1201 GCTACACTTACTTAA 1215 > Ahg920165 jgi|Araly1|920165|scaffold_101446.1 Length=1246 Score = 734 bits (397), Expect = 0.0 Identities = 747/914 (82%), Gaps = 31/914 (3%) Strand=Plus/Plus Query 384 AAGATTTGGGTTCCATCGAATCCTCGAGGTGCAGAGATG-TTACCTCCAAGTTTTGTTGC 442 ||||||||||||||||||||||| ||||||||||| ||| | | |||| || | |||| Sbjct 312 AAGATTTGGGTTCCATCGAATCCCCGAGGTGCAGAAATGCTGA-CTCCTGGTATCATTGC 370 Query 443 AGCCGAATCGGATTTTTACTTACGAAGA-TTGTGGGGATTGCCTAAAGATGAT-TTACCA 500 | | ||||| |||| ||| |||| ||| || |||||||| ||| |||| ||| || || Sbjct 371 ATCTGAATCAGATTACTACATACGCAGACTT-TGGGGATTACCTGAAGAGGATGTT-CC- 427 Query 501 GTGGTGAAGCCTAAGTATCTTGTTGCTTTTACTGTTTCTTATGAACAAAGAAA--AAACA 558 | |||||||| |||||||| ||||||||||||| || || | ||||| |||| Sbjct 428 -T-GTGAAGCCAAAGTATCTCATTGCTTTTACTGTCGGTTTTGGTC--AGAAAGTAAACG 483 Query 559 TCGATGCTTGTGTCAAAAAATTCTCAGATA-ACTTCACCATTGTTCTGTTTCATTACGAT 617 | |||||||||||||| || || ||||| | | ||||| ||||| ||||| || |||||| Sbjct 484 TTGATGCTTGTGTCAAGAAGTTTTCAGA-AGATTTCACAATTGTCCTGTTCCACTACGAT 542 Query 618 GGAAAAACCTCGGAGTATGATGAATTTGAATGGTCTAAACGGGCGATACACGTCAGTGTA 677 ||| |||| | || | | ||||| |||||||| ||||| || |||||||| || || Sbjct 543 GGACGAACCACAGAATGGGGCGAATTCGAATGGTCCAAACGCGCAATACACGTGAGCGTG 602 Query 678 CCTAAGCAAACCAAGTGGTGGTATGCTAAAAGGTTTCTGCATCCTGATATCATAGCACCA 737 || ||||||||||| ||||||||||||||| |||||||||||||||| ||| | ||||| Sbjct 603 CCAAAGCAAACCAAATGGTGGTATGCTAAACGGTTTCTGCATCCTGACATCGTGGCACCT 662 Query 738 TATGAATATATATTCATTTGGGATGAAGATCTTGGCGTTGAAAACTTCGACGCAGAAGAG 797 ||||| ||| ||||||| ||||||||||| || ||| ||||||||||||| | ||||||| Sbjct 663 TATGACTATGTATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGTAGAAGAG 722 Query 798 TACATCAAGATTG-TGAATAAGCATGGTCTAGAAATATCGCAACCCGCTGTGGAATC-AA 855 |||||| || || | || || || |||||||| |||||||| || |||||||| || || Sbjct 723 TACATC-AGGCTGATTAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTGGAGTCTAA 781 Query 856 GAAAATCA-ATCACATGGAAGATAACAAAGAGAATACCCGGAA-TCGAAGTTCACAAAGA 913 |||| | ||||| ||| ||||||||||||||| | || || |||||||||||||| Sbjct 782 -AAAA-AAGATCACGTGGGAGATAACAAAGAGAAAAACC-AAAGGAGAAGTTCACAAAGA 838 Query 914 AGTCGAA-GAGAAACCAGGCCGCTGCAATGACCCTCACCTACCTCCTTGTGCAGG-GTTT 971 | | || ||||||||||| || ||||| ||||||||| | ||||| ||||| || |||| Sbjct 839 TG-CCAAGGAGAAACCAGGTCGATGCAACGACCCTCACTTGCCTCCATGTGC-GGCGTTT 896 Query 972 ATAGAGATTATGGCTCCAGTTTTCTCTAGAGAGGCATGGCGTTGTGTGTGGCATATGATT 1031 |||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||| Sbjct 897 ATAGAGATTATGGCTCCAGTATTCTCAAGAGATGCGTGGCGTTGTGTGTGGCATATGATT 956 Query 1032 CAGAATGACTTGGTTCACGGTTGGGGTCTTGACTTTGCGCTAAGAAAATGCGTCGAGCCT 1091 ||||| |||||||||||||||||||||||||| ||||| || | ||||||||||||||| Sbjct 957 CAGAACGACTTGGTTCACGGTTGGGGTCTTGATTTTGCACTCCGTAAATGCGTCGAGCCT 1016 Query 1092 GCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCT 1151 |||||||||||||| || |||||||||||||||||||||||||||||| |||||||| Sbjct 1017 GCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATTCATCAATCTCTTCCTTCT 1076 Query 1152 TTAGGCAGCCAGGGA-ACCGCGCAGGAAGGGAAAACCGCGTTCCAAGGGGTAAGAGAGAG 1210 ||||||||||||||| | || || || || ||| | | || |||||||| ||||| || Sbjct 1077 TTAGGCAGCCAGGGAGAG-GCACAAGATGGTAAAGCAGGGTGGCAAGGGGTGAGAGACAG 1135 Query 1211 ATGTAAACGGGAATGGACAATGTTTCAGAAAA-GAATGACCCGATCAGAGCAGAAGTATC 1269 ||||||||| ||||||||||||||||| || || || | | || ||| || |||||| Sbjct 1136 ATGTAAACGAGAATGGACAATGTTTCA-AAGCCGATTGGCGAGTTCCGAGAAGCAGTATC 1194 Query 1270 TGAAAGAAATTGCA 1283 | || ||||| ||| Sbjct 1195 TCAAGGAAATCGCA 1208 > Ahg481676 jgi|Araly1|481676|fgenesh2_kg.4__736__AT2G28310.1 Length=1402 Score = 281 bits (152), Expect = 8e-75 Identities = 441/577 (76%), Gaps = 34/577 (6%) Strand=Plus/Plus Query 681 AAGCAAACCAAGTGGTGGTATGCTAAAAGGTTTCTGCATCCTGATATCATAG-CACCATA 739 |||||||| || |||||||| || || |||||| | ||||||||| | | | || | || Sbjct 715 AAGCAAACAAAATGGTGGTACGCGAAGAGGTTTTTACATCCTGATGTTGT-GTCAGCTTA 773 Query 740 TGAATATATATTCATTTGGGATGAAGATCTTGGCGTTGAAAACTTCGACGCAGA-AGAGT 798 || || ||||| || ||||||||||||||||| || || | ||| | || || | ||| Sbjct 774 CGAGTACATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATA-AGT 832 Query 799 ACATCAAGATT-GTGAATAAGCATGGTCTAGAAATATCGCAACC-CGCTGTGGAATCAAG 856 |||| || || || || ||||||||| |||| || || ||||| || | || | | Sbjct 833 ACATTGAG-TTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGC-CTAGAGCCCA- 889 Query 857 AAAAT-CAATCACAT-GGAAGATAACAAAGAGAATACCCGG-AATCGA-A-GTTCACAAA 911 | ||| | |||||| |||| || ||||| || | | || | ||| | || |||||| Sbjct 890 ACAATGGACTCACATGGGAA-ATGACAAAAAGGAGA---GGTGACCGAGAGGTCCACAAA 945 Query 912 GAAGT-CG-AAGAGAAACCAGGCCGCTGCAATGACCCTCACCTACCTCCTTGTGCAGGGT 969 | | | || |||| |||||||| | || || ||||| || ||||||| ||||| | | Sbjct 946 G-A-TACGAAAGAAAAACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCAT 1003 Query 970 TTATAGAGATTATGGCTCCAGT-TTTCTCTAGAGAGGCATGGCGTTGTGTGTGGCATATG 1028 || | || || ||||| || || ||| ||| |||| |||||||| ||||||||||||||| Sbjct 1004 TTGTTGAAATAATGGCGCCCGTATTT-TCTCGAGAAGCATGGCGATGTGTGTGGCATATG 1062 Query 1029 ATTCAGAATGACT-TGGTTCACGGTTGGGGTCTTGACTTTGCGCTAAGAAAATGCGTCGA 1087 |||||||| || | ||||||| || |||||||| ||||||||||| |||| |||||| || Sbjct 1063 ATTCAGAACGA-TCTGGTTCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGA 1121 Query 1088 GCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAA-GATTC 1146 ||||| ||||||||||||||||||||||||||||||||||| || ||| ||| ||| | Sbjct 1122 ACCTGCTCATGAGAAGATTGGTGTTGTGGATTCTCAATGGATAATACAT-AAAGTGATAC 1180 Query 1147 CTTCT-TTAGGCAGCCAGGGAACCGCGCAG-GAAGGGAAAACCGCGTTC-CAAGGGGTAA 1203 | || || || || || |||| | ||| ||| |||||| | | | ||||| || | Sbjct 1181 CGTCACTT-GGAAGTCAAGGAAA-GT-CAGAGAATGGAAAAGCTCCATGGCAAGGAGTGA 1237 Query 1204 GAGAGAGATGTAAACGGGAATGGACAATGTTTCAGAA 1240 |||||||||| ||| ||||||||||||||||||||| Sbjct 1238 GAGAGAGATGCAAAATGGAATGGACAATGTTTCAGAA 1274 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57363908970 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5