BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26460.1
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484409 jgi|Araly1|484409|fgenesh2_kg.5__401__AT3G26460.1 798 0.0
Ahg945743 jgi|Araly1|945743|scaffold_701972.1 333 1e-90
Ahg322644 jgi|Araly1|322644|fgenesh1_pm.C_scaffold_5000188 322 2e-87
> Ahg484409 jgi|Araly1|484409|fgenesh2_kg.5__401__AT3G26460.1
Length=549
Score = 798 bits (432), Expect = 0.0
Identities = 498/530 (94%), Gaps = 3/530 (1%)
Strand=Plus/Plus
Query 40 GAGAGAGCGAAATGGCGACGTCGGGAACATACGTGACGGAGGTACCGTTAAAAGGAACAG 99
|||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 1 GAGAGAAAGAAATGGCTACGTCGGGGACATACGTGACGGAGGTACCGTTGAAAGGAACGG 60
Query 100 CAGAGAAACACTTCCAGAGGTGGAGGAACGAGAACCATCTCTTCCCTGACGCTGTTGGCC 159
| |||||||||||| ||||||||||||||||||||||||||||||||||||| || || |
Sbjct 61 CGGAGAAACACTTCAAGAGGTGGAGGAACGAGAACCATCTCTTCCCTGACGCCGTCGGTC 120
Query 160 ACCACATCCAAGGTGTTTCTGTTCACGACGGCGAATGGGACACTCACGGAAGCATCAAGA 219
||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||
Sbjct 121 ACCACATCCAAGGTGTTACTGTTCACGATGGCGAATGGGACACTCACGGAGGCATCAAGA 180
Query 220 TTTGGAACTACACATTGGGAGATGGAAAGCAAGAGGAATTCAAGGAGAGGAGAGAGATGG 279
||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct 181 TTTGGAACTACACATTGGGAGATGGAACGCAGGAGGTATTCAAGGAGAGGAGAGAGATGG 240
Query 280 ACGATGAGAATAACACAATGAAGGTTGTAGGACTGGAAGGTCACGTGATGGAGCAGCTCA 339
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACGACGAGAGTAACACAATGAAGGTTGTAGGACTGGAAGGTCACGTGATGGAGCAGCTCA 300
Query 340 AGGTGTATGAGATCGATTTCCAATTTATTCCCAAGTCTGAAGAAGATTGCATCTGCAAAA 399
||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 301 AGGTGTATGAGGTCGATTTCCAATTTATTCCCAAGTCTGAAGATGATTGCGTCTGCAAAA 360
Query 400 TCACTATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAAC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCACTATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAAC 420
Query 460 TCCTCAAGAGCATGGTTATTGATATGGAGGACCACGTCCTTAAAGCTTAATC---AACAT 516
||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||
Sbjct 421 TCCTCAAGAGCATGGTTGTTGACATGGAGGACCACGTCCTTAAAGCTTAATATTGAACAT 480
Query 517 CACCATCATCCCTATATGTTTATTAAGTTGTTTTCAATTATATCTAATAA 566
|| |||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct 481 CATCATCATCCCTATATGTCTATTAAGTTGTTTTCAATTATACCTATTAA 530
> Ahg945743 jgi|Araly1|945743|scaffold_701972.1
Length=499
Score = 333 bits (180), Expect = 1e-90
Identities = 399/500 (80%), Gaps = 33/500 (7%)
Strand=Plus/Plus
Query 33 AGAGAGGGAGAGAGCGAAATGGCGACGTCGGGAACATACGTGACGGAGGTACCGTTAAAA 92
|||||| |||||| |||||||||||||||||||||||||||||||||| || || |||
Sbjct 6 AGAGAGAGAGAGAAATAAATGGCGACGTCGGGAACATACGTGACGGAGGTTCCATTGAAA 65
Query 93 GGAACAGCAGAGAAACACTTCCAGAGGTGGAGGAA-CGAGAACCATCTCTTCCCTGACGC 151
||| | || |||||||||| | |||| |||| || |||||||||| ||||||||||| |
Sbjct 66 GGATCGGCGGAGAAACACTACAAGAGCTGGAA-AAGCGAGAACCATGTCTTCCCTGACAC 124
Query 152 TGTTGGCCACCACATCCA-AG-GT-GTTTCTGTTCACGACGGCGAATGGGACACTCACGG 208
| ||||| |||||||| | || ||| |||||||| |||||| ||| |||||||
Sbjct 125 CATCGGCCAACACATCCATAACGTCGTT---GTTCACGAAGGCGAACATGACGCTCACGG 181
Query 209 AAGC-ATCAAGATTTGGAACTACACAT-TGGGAGATGGAAAGCAAG-AGGAA-TTCAAGG 264
| |||| || |||| ||||||||| || | ||||||| ||| || | ||||| |
Sbjct 182 GT-CTATCAGGAGTTGGGACTACACATATG--A--TGGAAAG-AAGGAG-ACGTTCAAAG 234
Query 265 AGAGGAGAGAGATGGACGATGAGAATAACACAATGAAGGTT-GTAGGACTGGAAGGTCAC 323
||| ||||||||| || || |||||||| ||| ||| | | ||||||||| ||||||
Sbjct 235 AGAAGAGAGAGATAGATGACGAGAATAAAACATTGACGAAAAG-AGGACTGGAGGGTCAC 293
Query 324 GTGATGGAGCAGCTCAAGGTGTATGA-GATCGATTT-CCAATTTATTCCCAAGTCTGAAG 381
||||||||| ||||| |||| ||| | || |||| ||||||||||||||| ||||| |
Sbjct 294 CCGATGGAGCACCTCAAAGTGTTTGATG-TC-ATTTACCAATTTATTCCCAAATCTGAGG 351
Query 382 A-AGATTGCATCTGCAAAATCACTATGATATGGGAGAAGCGCAACGATGA-TTTCCCCGA 439
| || | || |||||||| |||||||| |||||||||||||||||||||| |||||| ||
Sbjct 352 ATAGCT-GCGTCTGCAAACTCACTATGCTATGGGAGAAGCGCAACGATGACTTTCCC-GA 409
Query 440 ACCAAGCAGCTACATGCAACTCCTCAAG-AGCATGGTTATTGATATGGA-GGACCACGTC 497
||||||| |||||||| || || ||||| | |||||| |||| || || || |||||||
Sbjct 410 ACCAAGCGGCTACATGAAATTCGTCAAGCAA-ATGGTTGTTGACATTGAAGG-CCACGTC 467
Query 498 CTTAAAGCTTAATCAACATC 517
||||||||| || ||||
Sbjct 468 AGCAAAGCTTAACCATCATC 487
> Ahg322644 jgi|Araly1|322644|fgenesh1_pm.C_scaffold_5000188
Length=456
Score = 322 bits (174), Expect = 2e-87
Identities = 370/463 (80%), Gaps = 19/463 (4%)
Strand=Plus/Plus
Query 51 ATGGCGACGTCGGGAACATACGTGACGGAGGTACCGTTAAAAGGAACAGCAGAGAAACAC 110
||||||||||| |||||||| ||||||||||| || || |||||| | || |||||||||
Sbjct 1 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCCGCGGAGAAACAC 60
Query 111 TTCCAGAGGTGGAGGAACGAGAACCATCTCTTCCCTGACGCTGTTGGCCACCACATCCAA 170
| | || | ||||||| |||||||| |||||||| ||||| | ||||||||||||||
Sbjct 61 TACAAGCGTTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAG 120
Query 171 GGTGTTTCTGTTCACGACGGCGAATGGGACACTCACGGAAG-CATCAAGATTTGGAACTA 229
|||||| | | |||||||||||||||||| |||| || || ||||||||||||||||||
Sbjct 121 GGTGTTACCATCCACGACGGCGAATGGGACTCTCATGG-AGCCATCAAGATTTGGAACTA 179
Query 230 CACATTGGGAGAT-GGAAAGCAAGAGGAATTCAAGGAGAGGAGAGAGATGGACGATGAGA 288
|||| | | ||| ||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 180 CACA-T--GCGATGGGAAAGC-GGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGA 235
Query 289 ATAACACAATGAAGGTT--GTAGGACTGGAAGGTCACGTGATGGAGCAGCTCAAGGTGTA 346
||| | | || ||| | |||||||||||||||||||||||||||||| || |||||
Sbjct 236 ATATGGCGGT-AACGTTCAG-AGGACTGGAAGGTCACGTGATGGAGCAGCTTAAAGTGTA 293
Query 347 TGA-GATCGAT-TTCCAATTTATTCCCAAGTCTGAAGAAGAT-TGCATCTGCAAAATCAC 403
||| | || || || || || |||| ||||| || ||| | |||||| || |||||
Sbjct 294 TGACG-TC-ATCTTTCAGTTCATTCAAAAGTCCCCTGATGATAT-CATCTGTAAGATCAC 350
Query 404 TATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAACTCC- 462
|||||| |||||||||| |||||||| | || || || |||| ||||||| || | |
Sbjct 351 TATGATTTGGGAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATG-AAGTTCG 409
Query 463 TCAAGAGCATGGTTATTGATATGGAGGACCACGTCCTTAAAGC 505
|||||||| | | ||| ||||| || ||||| || |||||
Sbjct 410 TCAAGAGCCTCGCCGCTGACATGGACGATCACGTTCTCAAAGC 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25313616888
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5