BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26480.1 Length=2295 Score E Sequences producing significant alignments: (Bits) Value Ahg353574 jgi|Araly1|353574|fgenesh1_pg.C_scaffold_7000747 3518 0.0 > Ahg353574 jgi|Araly1|353574|fgenesh1_pg.C_scaffold_7000747 Length=2307 Score = 3518 bits (1905), Expect = 0.0 Identities = 2181/2313 (94%), Gaps = 24/2313 (1%) Strand=Plus/Plus Query 1 ATGATTCGCGGCGGAAGAAACAACATTACTTCCGCTCCGGCGTTTTCGAAAGACGCAAAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATTCGCGGCGGAAGAAACAACATTACTTCCGCTCCGGCGTTTTCGAAAGACGCAAAG 60 Query 61 AAGCTTCTTTTATGCACAGCCAACACCGTCTCTGTTTACAGCGTCGCCACTGGCTTAAAG 120 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 AAGCTTCTTCTATGCACAGCCAACACCGTCTCTGTTTACCGCGTCGCCACTGGCTTAAAG 120 Query 121 ATTACTTCACTCGAGGATCATACAGCGCCTGTGACGTCTGTGATTGTTGATCCGTCTTCC 180 |||||||||||||||||||||||||| ||||||||| |||||||||||||| | | ||| Sbjct 121 ATTACTTCACTCGAGGATCATACAGCACCTGTGACGACTGTGATTGTTGATATGGCGTCC 180 Query 181 GACGAAACCGTCAGTTACTGTTGGACTTCGTCGCTCGATGGGAAAATTCGGATTTGGGAG 240 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AACGAGACCCACAGTTACTGTTGGACTTCGTCGCTCGATGGGAAAATTCGGATTTGGGAG 240 Query 241 TTCTCTGCGCCGAAGCTTTTGAAGATATTTGATACCCACCTTCCAATTCACTCTCTGGTG 300 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 241 TTCTCTGCGCCGAAGCTTTTGAAGACATTTGATACCCACCTTCCAATTCACTCTCTGGTG 300 Query 301 ATGATTCCAGCTCAAGTGTCACATTCCGTGATTGCTTATGTTTCGGTTGAGGACTATTCA 360 ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 301 ATGATTCCATCTCACGTGTCACACTCCGTGATTGCTTATGTTTCGGTTGAGGACTATTCA 360 Query 361 AGTGTGTCCAAAGATTTGTTTGGACAAATCCGGAGATATGATCTCACTCAAGACCCTCTT 420 |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 361 AGTGTGTCCAGTGATTTGTTTGGACAAATCCGGAGATATGATCTCACTGAAGAGCCTCTT 420 Query 421 CATAGTGGAGACACTTTGAAAGAGATGGAAGAACCAAAACCTATTGTTTTAAGTCCCTCT 480 | ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 421 CCTAGTGGAGACATTTTGAAAGAGATGGAAGAACCAAAACCTATTGTTCTAAGTCCCT-T 479 Query 481 -GGAGAGTTTTTCGGCGTCTGTCATAACTGCAGTATACATATATGGAATG-------T-- 530 ||||| |||||||||||| ||| || |||| ||||||||||||||||| | Sbjct 480 AGGAGATTTTTTCGGCGTCAGTCGTAGTTGCAATATACATATATGGAATGCCTCTCTTGG 539 Query 531 GGCATCAGAGCACCTCATGCCAAAGGAGACGACATTACATCATACAGAGTTGATTACTGT 590 |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 540 GGCATCAGAGCATCTCAAGCCAAAGGAGACGACATTACATCACACAGAGTTGATTACTGT 599 Query 591 TTTTGCTTTCCATCCCAATCAGAGAATATTAGCAGCCGGTGATGTAACAGGAAGAGTGTT 650 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 600 TTTTGCTTTCCATCCCAATCAGAGAATATTAGCAGCCGGTGATGTAAAAGGAAGAGTGTT 659 Query 651 AATTTGGAAGGATAATGGTATTGGAGAATTTACTTCAGTGAAAACTGAAGATGATACTGA 710 |||||||||||||| ||||| ||||||| ||||||||||||||| ||||| |||| |||| Sbjct 660 AATTTGGAAGGATATTGGTAATGGAGAACTTACTTCAGTGAAAAGTGAAGGTGATCCTGA 719 Query 711 ATCTTGCACTACTTTCAACTGGCACAGCGCTGAAGTAACCGTCCTTAATTTCTCTTCAGA 770 |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 720 ATCTTGCACTGCATTCAACTGGCACTCCGCTGAAGTAACCGTCCTTAATTTCTCTTCAGA 779 Query 771 TGGAGCACTTTTGTATTCTGGGGTAAAGGCAGGTGATTTTGTTGTTTGGGAGCTAGGTAC 830 ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct 780 TGGAGCACTGTTGTATTCTGGGGTAAAGGAAGGTGTTTTTGTTGTTTGGGAGCTAGATAC 839 Query 831 AGGGAAGAAGCAACTTTTGCCAAAGATTGGATCTCCC-TTGTTGTATTTCATCTTCTCTT 889 | |||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||||| Sbjct 840 AAGGAAAAAGCAACTTTTGCCAAAGATTGGATC-CCCGTTGTTGTATTTCATCTCCTCTT 898 Query 890 CAGATTCAACTCTTTCTTCTGTGATTTGTGCAGATAATCAAATTCATCTTCTT-AAAATG 948 ||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||| Sbjct 899 CAGATCCAACTCTTTCTTCTGTGATTTGTGCAGATAATCAGATTCATCTT-TTAAAAATG 957 Query 949 CCTTCCATGGAGATATTGAGAACGATATCTGGAATCAAGCCTCCGACACCAGAGCGTCAC 1008 ||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||| Sbjct 958 CCTTCCATGGAGATACTGAGAACGATATCTGGAATCAAGCCTCGGAGATCAGAGCGTCAC 1017 Query 1009 GGGTTTATATGCTACGTCAAAACGCGGGATATATGCCTCACCAGAACTGTATCCATTGAT 1068 ||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| Sbjct 1018 GGGTTTATATGCTACGTTAAAACGAGGGATATATGCCTCACCAGAACTGTGTCCATTGAT 1077 Query 1069 CGTTCTTCCGGTATAGCTGCTTTCTGCACAGCGAATCATCGTGTTCAACTCTACAACCTT 1128 |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1078 CGTTCTTCCGGTATAGCTGCTTTCTGTGCAGAGAATCATCGTGTTCAACTCTACAACCTT 1137 Query 1129 TTAAGTGACCATGACATTTCAGAGGTTCAAATTTGC----G--ATCATCATCCAGACGAT 1182 |||||||||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct 1138 TTAAGTGACCATGAAATTTCAGAGGTTCAAATTTGCGAGAGAAATCATCATCCAGACG-- 1195 Query 1183 GATGATCAAGTCCGGGTTCTCGTGACTGCGGTTGCTCTCTCTCGGAATGGCTCAGTAATG 1242 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1196 G-TGATGAAGTCCGGGTTCTCGTGACTGCGGTTGCTCTCTCTCGGAATGGCTCAGTGATG 1254 Query 1243 ACTACAGCTGAGGCCAGATTTGCTGCAAGCAATTTCAGTGAAGGCATAGTTTCTCTCAAG 1302 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1255 ACTACAGCTGATGCCAGATTTGCTGCAAGCAATTTCAGTGAAGGCTTAGTTTCTCTCAAG 1314 Query 1303 TTTTGGGTATTTGTACCGGACAGCAAAACTTTCAGCTTATCGACAGTCATAAATCAACCT 1362 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 TTTTGGGTGTTTGTACCGGACAGCAAAACTTTCAGCTTATCGACAGTCATAAATCAACCT 1374 Query 1363 CACAGGGAAGCTGCAATTACAGCCATTGCCCTTAACCCCGCCCGTTCCATGGCTGTTAGT 1422 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1375 CACAGGGAAGCTGCTATCACAGCCATTGCCCTTAACCCCGCCCGTTCCATGGCTGTTAGT 1434 Query 1423 ATATCTTCTGCTGGGGACTTCAAGATTTGGGTTTGCAGTAGCGACAAGAATCTGACACCT 1482 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1435 ATATCTTCTGCTGGGGACTTCAAGATTTGGGTTTGCAATAGCGACAAGAATCTGACACCT 1494 Query 1483 GAGGACTCAAACTGGATTTGTCATGGAGTTGGCTCTTATAAGAGAACGCCAATAACAGCT 1542 ||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| Sbjct 1495 GAGGATTCAAACTGGATATGTCATGGAGATGGCTCTTACAAGAGAACGCCAATAACAGCT 1554 Query 1543 GCTGTTTTTTCCGGGGATGGTTCTTGTCTGGCTCTTGCGGCTAAAACAGTTATTACGATC 1602 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1555 GCTGTTTTTTCCGGGGATGGTTCTTGTCTGGCTATTGCGGCTAAAACAGTTATTACGATC 1614 Query 1603 TGGCACCCGTTAAAGAACGAACTCCTGTATGTAGTTGGAAAGGCAAATGCGCCAATTATG 1662 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1615 TGGCACCCGTTAAAGAACGAACTCTTGTATGTAGTTGGAAAGGCAAATGCGACAATTATG 1674 Query 1663 GAACTCTCATTCACTGGAGGAGGCTTCCTTATTGCTGCATCCCATGGTTCCACACCGCAC 1722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1675 GAACTCTCATTCACTGGAGGAGGCTTCCTTATTGCTGCATCCCATGGTTCCACACCGCAC 1734 Query 1723 TTATCTGTCTGGGATCTGATGACGTTCTGCTTATCATGGTCATATAGATTATACATAGAA 1782 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1735 TTATCTGTCTGGGATTTGATGACGTTCTGCTTATCATGGTCTTATAGATTATACATAGAA 1794 Query 1783 GCCATTGCTACTGAAGTGGACTCACCATACTTTGCAGTTTTAACATGGCTTCCAGAATCT 1842 |||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct 1795 GCCATTGCCACTGAAGTGGGCTCGCCATACTTTGCAGTATTAACATGGCTTCCAGAATCT 1854 Query 1843 GATAGGTTGGTAAAATCTAACGAACAGATATTCCGCGGGAAAGATGGTGCTATCCTCTTG 1902 |||||||||||||||||||||| ||| || ||| ||||||||||||||||||| |||||| Sbjct 1855 GATAGGTTGGTAAAATCTAACGGACAAATGTTCTGCGGGAAAGATGGTGCTATTCTCTTG 1914 Query 1903 TTTGATGGGTCAGGCCCTAAACCAGTAGCTATTTGGACTGTAATGAAGGCCAGAGGAGGA 1962 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1915 TTTGATGGGTCAGGCCCTAAACCAGTAGCTATTTGGACTGTAATGAAGGCCAGGGGAGGA 1974 Query 1963 ACACTTTCATTTGTGGAAGATGGTAAAAAGTCTCAGCCGCTTCTCGCGTATGTAAACAGG 2022 || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1975 ACGCTTTCATTTGTGGAAGATGGTAAAAAGTCTCAGCCACTTCTCGCATATGTAAACAGG 2034 Query 2023 AGCCATGAATATGTTCTATTTGATCCTTATAGCGATGAAAAACTCGAGACTAGCGCCATA 2082 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 2035 AGCCATGAATATGTTCTTTTTGATCCTTATGGCGATGAAAAACTCGAGACTAGCGCCATA 2094 Query 2083 GATTATGAAGTTTTTCTTGCAGCAATAAGCAAAAAGAAGAAGAGATCTAGGAAGAAAGCA 2142 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 2095 GATTATGAAGTTTTTCTTGCAGCAATAAGCAAGAAGACGAAGAGATCTAGGAAGAAAGCA 2154 Query 2143 TTGATGTCAGAGAAACCTTGGGAAACAATGTTTTGTGGATCAACACTCAATTTCCCGCCT 2202 |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 2155 TTGATGTCAGAGAAACCTTGGGAAACAAACTTTTGTGGATCAACGCTCAATTTCCCGCCT 2214 Query 2203 TTCCCCGACTTGTGCGCTTCGTTCTTCAGTTCCCGGATGCAGAAAGAGGTGTGTGAGAGA 2262 ||||||||| ||||| || | |||||||||||||||||||||||| |||||||||||||| Sbjct 2215 TTCCCCGACGTGTGCTCTGCTTTCTTCAGTTCCCGGATGCAGAAAAAGGTGTGTGAGAGA 2274 Query 2263 GCAGATAGACAACCTGAAAGACATAGCTCTTGA 2295 ||||| ||| |||||||||| |||||||||||| Sbjct 2275 GCAGAGAGAGAACCTGAAAGTCATAGCTCTTGA 2307 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86426765905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5