BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26510.5 Length=1695 Score E Sequences producing significant alignments: (Bits) Value Ahg484412 jgi|Araly1|484412|fgenesh2_kg.5__404__AT3G26510.3 845 0.0 > Ahg484412 jgi|Araly1|484412|fgenesh2_kg.5__404__AT3G26510.3 Length=1015 Score = 845 bits (457), Expect = 0.0 Identities = 621/694 (89%), Gaps = 36/694 (5%) Strand=Plus/Plus Query 329 GAGTTAGCGTCGAAGATGGCGGAGA--T---GT-GCGGCGGC-GT--CGGCGGATCTATA 379 ||||||||||||||||||||||||| | || |||||||| || ||||||||||| | Sbjct 215 GAGTTAGCGTCGAAGATGGCGGAGATGTGCGGTGGCGGCGGCGGTGGCGGCGGATCTACA 274 Query 380 ACCGTAACGATCCGATGTCAGCTTCCGACGGAAGATCTCGACGCGCTCGTTTCAATTACT 439 |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| Sbjct 275 ACCGTAACGATCCGATGTCAACTTCCGATGGAAGATCTCGATGCGCTCGTTTCAATTACT 334 Query 440 TCCGATGAAGATCTAGTGAATCTAATCGAAGAGTACGATCTCGTTTCCTCTTCATCTCCG 499 |||||||||||||||| |||||||||||||||||||||||||||||| || || |||||| Sbjct 335 TCCGATGAAGATCTAGCGAATCTAATCGAAGAGTACGATCTCGTTTCTTCATCTTCTCCG 394 Query 500 ATGAAAATCAGAGTCTTCTTAAATCCACCAAAATCCGCCGCCGGATCTAAAAAATCTCCT 559 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || Sbjct 395 ATGAAAATCAGAGTCTTCTTAAATCCACCAAAATCCGCCGTCGGATCTAGAAAATCACCG 454 Query 560 CCTCCGTTAGCGTTACCGTCATCAACCACCACGTCATCATCTTCCACAACTTCCTCTACT 619 ||||||||||||||||||| | | ||||||||||||||||||| || ||||||||| || Sbjct 455 CCTCCGTTAGCGTTACCGT--T-ATCCACCACGTCATCATCTTCTACTACTTCCTCTTCT 511 Query 620 TCATCAAGTCCTAGATCTCCGTC-TCTATCAAAACCACCGCTACCTCCGTCTCCACCGAG 678 ||||||||||||||||||||||| | |||| ||||||||||| |||||||| || ||||| Sbjct 512 TCATCAAGTCCTAGATCTCCGTCGT-TATCTAAACCACCGCTTCCTCCGTCACCGCCGAG 570 Query 679 AATAACGACGGTTACGAAGAATCCGTGTTATGGTTGTTATGTTCACCGTAATTCCAGAAA 738 ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| Sbjct 571 AATGACGACGGTTACGAAGAATCCATGTTACGGTTGTTATGTTCACCGTAATTCGAGAAA 630 Query 739 TATCTACCTTGTTCACAACGGCAATCACTGGCAATAACGTGAAGAATCTTCG-AATATAC 797 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 631 TATCTACCTTGTTCACAACGGCAATCACTGGCAATAACGTGAAGAATCGTCGGAATATAC 690 Query 798 GATTaaaaaaaaaaaGAATCTTCGttttttttttCTAATGTAAAAAAGAGCGAGAGATTA 857 ||||||||||||| | ||||||||| |||| | ||||||||| ||||||||||| | Sbjct 691 AATTAAAAAAAAAA-GTATCTTCGTTGTTTTATAA-AATGTAAAA--GAGCGAGAGAT-A 745 Query 858 TAATAGAAGGGTGTACGTGATCTAACCATCGCCATTAATGAAATCATCCCAAAAGCTTTT 917 |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct 746 TAATAGAAGGGTGTACGTGACCTGACCATCGCCATTAATGAAATCATCCCAAA---TTT- 801 Query 918 TATTCTCTGTTTGTTGGTGATGATGATGAATTGGGTAATTTAATCTATCCTTGTAAAATT 977 ||| | | ||||||||||||||||||||||||| | ||||||| ||||||| Sbjct 802 --------GTT-G--G-TGATGATGATGAATTGGGTAATTTACTTTATCCTTATAAAATT 849 Query 978 CGAGCAATGGCGTGATCGATTTTTCTCGTTTATG 1011 ||||||| |||||||||||||||||||||||||| Sbjct 850 CGAGCAAAGGCGTGATCGATTTTTCTCGTTTATG 883 Score = 309 bits (167), Expect = 4e-83 Identities = 205/223 (92%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 2 GCTTGCACAGAACAAACCAACCTTCTAGATTCTT-CTCCTTCCTTCTTCAACTCTCTCTC 60 |||||||||||||||||||| |||||||| |||| || |||||||||||| |||| |||| Sbjct 1 GCTTGCACAGAACAAACCAATCTTCTAGAATCTTCCTTCTTCCTTCTTCATCTCT-TCTC 59 Query 61 ACTTCTCCAGATATGGTTACATCTCCGACGAACTCAACAATCAAATTTCTCTGTAGCTAT 120 | ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TC-TCTACAGTTATGGTTGCATCTCCGACGAACTCAACAATCAAATTTCTCTGTAGCTAT 118 Query 121 GGCGGCAAAATCCTACCTCGTTATCCCGACGGTAAACTCCGTTACAACGGTGGTCACACT 180 |||||||||||| |||||||||||||||| || |||||||||||||||| ||||||||| Sbjct 119 GGCGGCAAAATCTTACCTCGTTATCCCGATGGCAAACTCCGTTACAACGACGGTCACACT 178 Query 181 CGCGTCCTCGCCGTTCCTCGCTCCGTCTCATTTTCCG-GTTAG 222 |||||||||||||||||||||||| |||||||||||| ||||| Sbjct 179 CGCGTCCTCGCCGTTCCTCGCTCCATCTCATTTTCCGAGTTAG 221 Score = 110 bits (59), Expect = 5e-23 Identities = 72/78 (92%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 1576 CATTTTTCAAAGAAGTACTTGCATAT-GAAGTTTTAGCAAAGAAAATATGAAACACATAT 1634 ||||||||||| |||||||||| ||| ||| | |||||||||||||| |||||||||||| Sbjct 939 CATTTTTCAAATAAGTACTTGCCTATCGAA-TATTAGCAAAGAAAATGTGAAACACATAT 997 Query 1635 GATGTAAGATAGAAGTGC 1652 |||||||||||||||||| Sbjct 998 GATGTAAGATAGAAGTGC 1015 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63572618905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5