BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26520.1
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484417 jgi|Araly1|484417|fgenesh2_kg.5__409__AT3G26520.1 1862 0.0
Ahg482663 jgi|Araly1|482663|fgenesh2_kg.4__1723__AT2G36830.1 675 0.0
> Ahg484417 jgi|Araly1|484417|fgenesh2_kg.5__409__AT3G26520.1
Length=1162
Score = 1862 bits (1008), Expect = 0.0
Identities = 1123/1175 (96%), Gaps = 22/1175 (2%)
Strand=Plus/Plus
Query 17 TATATATACGTACAACACATAAGAAAAACAAACCAATCACTTCACTCTCTC-TAATCAAA 75
||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||
Sbjct 1 TATATATACGTACAACACATAAGAAAACCAAACCAATCTCTTCACTCTCTCTTAATC-AA 59
Query 76 AAGCTTTTAACCTCAGCCGTTAAATCTTTCTCCGATCATGCCGACCAGAAACATCGCCAT 135
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 60 AAGCTTTTAACCTCAGCCGTTAAATCTTTGTCCGATCATGCCGACCCGAAACATCGCCAT 119
Query 136 TGGTGGAGTCCAAGAAGAGGTCTATCACCCCAACGCACTTAGGGCGGCGCTCGCTGAGTT 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGTGGAGTCCAAGAAGAGGTCTATCACCCCAACGCACTTAGGGCGGCGCTCGCTGAGTT 179
Query 196 TATCTCGACTTTGATCTTCGTCTTCGCCGGCTCAGGCTCCGGAATTGCTTTCAACAAGAT 255
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 180 TATCTCGACTTTGATCTTCGTCTTTGCCGGATCAGGCTCCGGAATTGCTTTCAACAAGCT 239
Query 256 CACTGACAATGGAGCAACCACTCCTTCCGGCCTCGTCGCCGCTGCCTTAGCTCATGCTTT 315
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GACTGACAATGGAGCCACCACTCCTTCCGGCCTCGTCGCCGCTGCCTTAGCTCATGCTTT 299
Query 316 CGGTCTCTTTGTCGCTGTCT-CTGTTGGCGCTAACATTTCCGGTGGCCACGTTAACCCTG 374
|||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct 300 CGGTCTCTTTGTCGCTGT-TGCTGTCGGCGCTAACATTTCCGGTGGCCACGTTAACCCTG 358
Query 375 CCGTTACCTTCGGTGTCTTACTCGGTGGTAACATCACTCTCCTCCGTGGTATTCTCTACT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCGTTACCTTCGGTGTCTTACTCGGTGGTAACATCACTCTCCTCCGTGGTATTCTCTACT 418
Query 435 GGATTGCTCAGCTTCTTGGCTCCGTCGCCGCTTGTTTCCTCCTTAGCTTTGCCACCGGTG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGATTGCTCAGCTTCTTGGCTCCGTCGCCGCTTGTTTCCTCCTTAGCTTTGCCACCGGTG 478
Query 495 GCGAGCCAATTCCAGCGTTCGGTCTCTCTGCCGGAGTCGGATCATTAAACGCTCTCGTCT 554
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 479 GCGAGCCAATTCCAGCGTTCGGTCTCTCTGCCGGAGTAGGATCATTGAACGCTCTCGTCT 538
Query 555 TCGAGATCGTGATGACCTTCGGGCTCGTCTACACCGTCTACGCCACAGCCGTTGACCCCA 614
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCGAAATCGTGATGACCTTCGGGCTCGTCTACACCGTCTACGCCACAGCCGTTGACCCCA 598
Query 615 AGAACGGTAGTCTCGGAACAATCGCACCAATCGCCATAGGTTTCATCGTTGGAGCTAACA 674
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 AGAAGGGTAGTCTCGGAACAATCGCACCAATCGCCATAGGTTTCATTGTTGGAGCTAACA 658
Query 675 TCCTCGCCGGTGGAGCTTTCAGCGGAGCTTCCATGAACCCAGCCGTTGCTTTCGGACCAG 734
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 TCCTCGCCGGTGGAGCTTTCAGCGGAGCCTCCATGAACCCAGCCGTTGCTTTCGGACCAG 718
Query 735 CCGTCGTAAGCTGGACGTGGACCAACCACTGGGTTTACTGGGCTGGTCCTCTTATTGGTG 794
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 CCGTCGTAAGCTGGACATGGACCAACCACTGGGTTTACTGGGCTGGTCCTCTTGTTGGTG 778
Query 795 GTGGACTCGCCGGAATTATCTACGACTTTGTCTTCATCGATGAAAATGCCCACGAGCAAT 854
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 GTGGACTCGCCGGAATTATCTACGATTTTGTCTTCATCGATGAAAATGCCCACGAGCAAT 838
Query 855 TGCCTACCACCGATTACTGAAGACGTCAAATTCAAC-GTTGTTAATCTGATGAATTTTTC 913
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 TGCCAACCACCGATTACTGAAGACGTCAAATTCAATTGTTGTTAATCTGATGAATTTTTC 898
Query 914 GTGATTT-GCTTTTTTAATTT-GCATCGTAATGGGTTTCTGGCCGTTGGATCATTTTTAG 971
||||||| | ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 899 GTGATTTTG-TTTTTTAATTTCGCATCGTAATGGGTTTCTGGCCGTTGGATCTTTTTTAG 957
Query 972 ATGAATCTTTGTCTATTGATTGATCATTTATGTGTCTTTGGGTTTGTTGTTGGAGTTGTA 1031
|||||||||||||| | ||||| || |||||||||||||||||||||||||||||
Sbjct 958 ATGAATCTTTGTCT---G-TTGAT--TT---GTGTCTTTGGGTTTGTTGTTGGAGTTGTA 1008
Query 1032 ATATCTC-TGGAAGGCTTTTGTGCAATTGTATTGTACGGTTTAATAACTAT-AATTGAGA 1089
|||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1009 ATAT-TCCTGGAAGGCTTTTGTGCAATTGTATTGTACGGTTTAATAACTTTTAATTGAGA 1067
Query 1090 AAACCAGGGAATGTG--AATTATGAAAATGAAtttttttGTTATTGTTTATTTTACTTAA 1147
|||||||||| |||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 1068 AAACCAGGGACTGTGTGAATTATGAAAATGAATTTTTTTTTTTTTGTTTATTTTACTTAA 1127
Query 1148 AGAGCCCTAACTAATTTAGATCATAATTTACGAGA 1182
||| || || |||||||||||||||||||| ||||
Sbjct 1128 AGAACCGTAGCTAATTTAGATCATAATTTAAGAGA 1162
> Ahg482663 jgi|Araly1|482663|fgenesh2_kg.4__1723__AT2G36830.1
Length=1022
Score = 675 bits (365), Expect = 0.0
Identities = 644/778 (83%), Gaps = 22/778 (3%)
Strand=Plus/Plus
Query 106 TCCGATCATGCCGACCAGAAACATCGCCATTGGTGGAGTCCAAGAAGAGGTCTATCAC-- 163
|||||||||||||| ||||||||||||| || | | |||| || || | | | | |
Sbjct 59 TCCGATCATGCCGATCAGAAACATCGCCGTT-G-GCCGTCC-TGATGAAG-C-AACCCGT 113
Query 164 CCCAACGCACTT-AGGGCGGCGCTCGCTGAGTTTATCTCGACTTTGATCTTCGTCTTCGC 222
||| |||| ||| | ||||||| | |||||||| || || ||||||||||||||| ||||
Sbjct 114 CCCGACGC-CTTAAAGGCGGCGTTGGCTGAGTTCATTTCAACTTTGATCTTCGTCGTCGC 172
Query 223 CGGCTCAGGCTCCGGAATTGCTTTCAACAAGATCACTGACAATGGAGCAACCACTCCTTC 282
||| |||||||| || || |||||||||||| ||||||| || ||||| |||||||||||
Sbjct 173 CGGTTCAGGCTCTGGCATGGCTTTCAACAAGCTCACTGAAAACGGAGCCACCACTCCTTC 232
Query 283 CGGCCTCGTCGCCGCTGC-CTTAGCTCATGCTTTCGGTCTCTTTGTCGCTGTCTCTGTTG 341
|| ||||| || || || | | ||||||||||| || ||||| ||||||||||| ||||
Sbjct 233 TGGTCTCGTAGCTGCCGCAC-TGGCTCATGCTTTTGGACTCTTCGTCGCTGTCTCCGTTG 291
Query 342 GCGCTAACATTTCCGGTGGCCACGTTAACCCTGCCGTTACCTTCGGTGTCTTAC-TCGGT 400
| |||||||| |||||||| ||||||||||||||||| || ||||||| ||| | | |||
Sbjct 292 GTGCTAACATCTCCGGTGGACACGTTAACCCTGCCGTCACTTTCGGTG-CTTTCATTGGT 350
Query 401 GGTAACATCACTCTCCTCCGTGGTATTCTCTACTGGATTGCTCAGCTTCTTGGCTCCGTC 460
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 351 GGTAACATCACTCTCCTCCGTGGTATCCTCTACTGGATTGCTCAGCTTCTTGGCTCCGTC 410
Query 461 GCCGCTTGTTTCCTCCTTAGCTTTGCCACCGGTGGCGAGCCAATTCCAGCGTTCGGTCTC 520
| ||||||| || |||| | || |||||||||||| | | | || || || ||||||
Sbjct 411 GTCGCTTGTCTCATCCTCAAATTCGCCACCGGTGGCTTGGCGGTGCCGGCTTTTGGTCTC 470
Query 521 TCTGCCGGAGTCGGA-TCATTAAACGCTCTCGTCTTCGAGATCGTGATGACCTTCGGGCT 579
||||| || || ||| | || |||||| |||| ||||||||||||||||| ||||||||
Sbjct 471 TCTGCTGGGGTAGGAGTG-TTGAACGCTTTCGTTTTCGAGATCGTGATGACATTCGGGCT 529
Query 580 CGTCTACACCGTCTACGCCACAGCCGTTGACCCCAAGAACGGTAGTCTCGGAACAATCGC 639
|| ||||||||||||||||| ||| |||||||||| ||||| ||||| |||||||| ||
Sbjct 530 TGTGTACACCGTCTACGCCACCGCCATTGACCCCAAAAACGGGAGTCTTGGAACAATTGC 589
Query 640 ACCAATCGCCATAGGTTTCATCGTTGGAGCTAACATCCTCGCCGGTGGAGCTTTCAGCGG 699
|| ||||| || |||||||| |||||||| |||||| | ||||| ||||||||| |||
Sbjct 590 TCCCATCGCAATCGGTTTCATAGTTGGAGCCAACATCTTAGCCGGAGGAGCTTTCTCCGG 649
Query 700 AGCTTCCATGAA-CCCAGCCGTTGCTTTCGGACCAGCCGTCGTAAGCTGGACGTGGACCA 758
||| |||||||| ||| ||||| ||||| |||||||| || || ||||||||||||||||
Sbjct 650 AGCCTCCATGAATCCC-GCCGTGGCTTTTGGACCAGCGGTGGTGAGCTGGACGTGGACCA 708
Query 759 ACCACTGGGTTTACTGGGCTGGTCCTCTTATTGGTGGTGGACTCGCCGGAATTATCTACG 818
|||||||||| |||||||| |||||||| | || |||||| |||| ||| | |||||||
Sbjct 709 ACCACTGGGTCTACTGGGCCGGTCCTCTCGTCGGCGGTGGAATCGCTGGACTCATCTACG 768
Query 819 AC-TTTGTCTTCATCGATGAAAATGCCCACGAGCAATTGCCTACCACCGATTACTGAA 875
| ||| |||||||| | | | ||||||| || | || ||||||||||||||||
Sbjct 769 AAGTTT-TCTTCATCAAC-ACCA--CCCACGAACAGCTCCCAACCACCGATTACTGAA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44832550392
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5