BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26570.1
Length=2098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347017 jgi|Araly1|347017|fgenesh1_pg.C_scaffold_5000409 2750 0.0
> Ahg347017 jgi|Araly1|347017|fgenesh1_pg.C_scaffold_5000409
Length=1761
Score = 2750 bits (1489), Expect = 0.0
Identities = 1674/1765 (95%), Gaps = 5/1765 (0%)
Strand=Plus/Plus
Query 115 ATGACTCTTCCTTATCGTTTCTCTTCCGTTAGAAACCACTCACTTCTACTTAAGACTTCT 174
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1 ATGACTCTTCCTTATCGTTTCTCTTCGGTTAGAAACCACTCGCTACTACTTAAGACTTCT 60
Query 175 CATCTCTGCACACCCAGATCAGCTCTTGGTTGTTGTTTCTCTCCCAAGGAATCCCCTTTC 234
||||||| |||||| |||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 61 CATCTCTACACACCTAGATCAGCTCTT-G--GTTGTTTCTCTCCCAAGGAATCTCCTTTC 117
Query 235 TTCAGGAAGAACACTGCCCAATTCCTTTCTCCTCAGAAACACACTTCTCTTCCTCTGAAA 294
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TTCAAGAAGAACACTGCCCAATTCCTTTCTCCTCAGAAACACACTTCTCTTCCTCTGAAA 177
Query 295 CTTGTCTGCCCTTTAGCTAGTTTCTCTTCTTATGCGGATTCTGAGGGAGAAGAGCAACAC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTTGTCTGCCCTTTAGCTAGTTTCTCTTCTTATGCGGATTCTGAGGGAGAAGAGCAACAC 237
Query 355 CATGCTGATCAACCGATACAGAACCCTCACGAATCTTCTACCGTTTCAAACGAATCAGAT 414
||||||||||||||||||||||| |||||||||||||||||| ||| | | |||||||
Sbjct 238 CATGCTGATCAACCGATACAGAATTCTCACGAATCTTCTACCGATTCGAGTGGATCAGAT 297
Query 415 GGGAAAGGTAATGCAGAAGCTACTGGAGACTTTTCTGGAATGGCTCAAGCCTTTCACATT 474
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 298 GGGAAAGGTAATGCAGAGGCCACTGGTGACTTTTCTGGAATGGCTCAAGCCTTTCACATT 357
Query 475 TCTTCCACAACAGCAAGGGCAATCTCTATAGTCATCGCCTTCTCTGCTCTCACCCTTCCA 534
|| || |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 358 TCATCGACAACAGCGAGGGCAATCTCCATAGTCATCGCCTTTTCTGCTCTCACCCTTCCA 417
Query 535 ATCTTCATGAAGTCCCTGGGACAAGGACTGGCTCTCAAGACCAAGCTTCTCTCTTACGCA 594
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATCTTCATGAAGTCCCTGGGGCAAGGACTGGCTCTCAAGACCAAGCTTCTCTCTTACGCA 477
Query 595 ACACTACTCTTTGGTTTCTACATGGCCTGGAACATCGGAGCTAATGATGTCGCAAATGCC 654
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 478 ACACTACTCTTTGGTTTCTACATGGCCTGGAACATCGGAGCTAACGATGTTGCCAATGCT 537
Query 655 ATGGGGACTTCTGTTGGATCTGGAGC-CTTGACAATCCGGCAAGCTGTGATGACAGCTGC 713
|||||||||||||||||||||||||| || || || || |||||||||||||| |||||
Sbjct 538 ATGGGGACTTCTGTTGGATCTGGAGCACTA-ACTATACGACAAGCTGTGATGACGGCTGC 596
Query 714 AGTTCTCGAATTCTCAGGTGCTCTTTTGATGGGAACTCACGTGACTAGCACGATGCAGAA 773
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 AGTTCTTGAATTCTCAGGTGCTCTTTTGATGGGAACTCACGTGACCAGCACGATGCAGAA 656
Query 774 AGGAATTCTCATGGCTAATGTGTTCCAAGGGAAAGATATGTTGCTCTTTGCTGGTCTCCT 833
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGGGATTCTCATGGCTAATGTGTTCCAAGGGAAAGATATGTTGCTCTTTGCTGGTCTCCT 716
Query 834 CTCTTCCTTAGCTGCAGCTGGAACTTGGTTACAGGTAGCTTCTTACTATGGATGGCCAGT 893
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CTCTTCCTTGGCTGCAGCTGGAACTTGGTTACAGGTAGCTTCTTACTATGGATGGCCAGT 776
Query 894 ATCAACAACTCACTGTATCGTCGGATCAATGGTTGGGTTTGGGCTTGTATATGGAGGAGC 953
||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 777 ATCGACCACTCACTGTATCGTCGGATCAATGGTTGGGTTTGGGCTTGTTTACGGAGGAGC 836
Query 954 TGGTGCCGTTTTCTGGAGTTCCCTAGCTAAAGTAGCTTCATCTTGGGTCATCTCTCCTAT 1013
|||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 837 TGGTGCTGTTTTCTGGAGTTCTCTAGCTAAAGTAGCTTCATCTTGGGTTATCTCTCCTCT 896
Query 1014 ACTGGGAGCTCTTGTCTCCTTCCTAGTCTACAAATGCATCAGGAGATTTGTTTACAGTGC 1073
| ||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 897 ATTGGGAGCTCTTGTCTCCTTTCTTGTCTACAAATGCATTAGGAGATTTGTTTATAGTGC 956
Query 1074 ACCAAACCCAGGACAAGCAGCGGCTGCTGCCGCTCCCGTCGCTGTATTTGTAGGTGTGGC 1133
||||||||| ||||||||||| ||||| || ||||| |||||||| || |||||||||||
Sbjct 957 ACCAAACCCGGGACAAGCAGCAGCTGCGGCTGCTCCAGTCGCTGTGTTCGTAGGTGTGGC 1016
Query 1134 CAGTATCTCCTCAGCCGCATTGCCTCTAAGTAAGATCTTTCCAATAGCTCTATCACAAGC 1193
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1017 CAGTATCTCCTCAGCCGCATTGCCTCTAAGTAAGATATTTCCAATAGCTCTATCACAAGC 1076
Query 1194 CTTAGCCTGTGGAGTAGCAGGAGCCATAGTATTCGACAGAATCATCCGCAAACAGCTCGG 1253
||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||
Sbjct 1077 CTTAGCCTGTGGAGTAGCAGGAGCCATTGTCTTTGACAGAATCATCCGCAAACAACTCGG 1136
Query 1254 TCACCTCCTAGCTAAAACAAAATCACCAGAAACATCTCAAAACCAACCCAAAACCATTGG 1313
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1137 TCACCTCCTAGCTAAAACCAAATCACCAGAAACATCTCAAAACCAGCCCAAAACCATCGG 1196
Query 1314 TTTCCTCTCCGATATCGCAGGACCAACAGGTACACAACTCGAAATAGTCTACGGAATCTT 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTTCCTCTCCGATATCGCAGGACCAACAGGTACACAACTCGAAATAGTCTACGGAATCTT 1256
Query 1374 TGGCTATATGCAAGTCCTCTCCGCTTGCTTCATGTCATTCGCTCACGGAGGCAACGACGT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1257 TGGCTATATGCAAGTCCTCTCCGCTTGCTTCATGTCATTCGCTCACGGAGGCAACGATGT 1316
Query 1434 CTCCAACGCAATCGGACCATTAGCCGCCGCATTAAGCATTCTCCAAAACGGAGCAGCTGC 1493
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1317 ATCCAACGCAATCGGACCATTAGCCGCCGCTTTAAGCATCCTCCAAAACGGAGCAGCTGC 1376
Query 1494 AGGAGGAGCCGAGATCGTTATCCCAATGGATGTTCTCGCTTGGGGAGGATTCGGAATCGT 1553
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1377 AGGAGGAGCCGAAATCGTTATCCCCATGGATGTTCTCGCTTGGGGAGGATTCGGAATCGT 1436
Query 1554 TGCTGGTCTCACAATGTGGGGATACAGAGTCATCGCAACGATAGGGAAGAAGATCACTGA 1613
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1437 TGCTGGTCTCACAATGTGGGGATACAGAGTCATTGCAACGATAGGGAAGAAGATCACTGA 1496
Query 1614 GCTAACACCAACAAGAGGATTCGCTGCGGAATTCGCCGCCGCGTCGGTTGTTTTGTTTGC 1673
|| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1497 ACTTACACCAACAAGAGGATTCGCGGCGGAATTCGCCGCCGCGTCGGTGGTTTTGTTTGC 1556
Query 1674 TTCGAAATTAGGGCTTCCGATTTCTGCGACTCATACACTTGTTGGTGCTGTGATGGGTGT 1733
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1557 TTCGAAATTAGGGCTTCCGATTTCAGCGACTCATACACTTGTTGGAGCTGTGATGGGTGT 1616
Query 1734 TGGTTTCGCTAGAGGGCTTAATAGTGTGAGAGCTGAGACTGTGAGAGAGATCGTTGCTTC 1793
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1617 TGGTTTCGCTAGAGGGCTTAATAGTGTCAGAGCTGAGACTGTGAGAGAGATTGTTGCTTC 1676
Query 1794 GTGGCTTGTCACCATTCCCGTTGGTGCTACACTCGCCGTTATCTACACTTGGATTTTCAC 1853
|||||| |||||||||||||| || ||||||||| |||| ||||||||||||||||||||
Sbjct 1677 GTGGCTCGTCACCATTCCCGTCGGAGCTACACTCTCCGTCATCTACACTTGGATTTTCAC 1736
Query 1854 CAAGATCTTATCTTTTGTATTGTGA 1878
|||||||||||||||||| || |||
Sbjct 1737 CAAGATCTTATCTTTTGTGTTATGA 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78922987640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5