BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26580.1 Length=1294 Score E Sequences producing significant alignments: (Bits) Value Ahg484422 jgi|Araly1|484422|fgenesh2_kg.5__414__AT3G26580.1 1866 0.0 > Ahg484422 jgi|Araly1|484422|fgenesh2_kg.5__414__AT3G26580.1 Length=1286 Score = 1866 bits (1010), Expect = 0.0 Identities = 1217/1310 (93%), Gaps = 41/1310 (3%) Strand=Plus/Plus Query 1 CTCTGGTTCTACTTGTTCCTCTGTTTTGGATTGTGGT-G-GCT--CTCTAATGGCGGCGG 56 ||||||||||||||||||||||| ||||||||||||| | | | ||| |||||||||| Sbjct 1 CTCTGGTTCTACTTGTTCCTCTG-TTTGGATTGTGGTGGTGGTGGTTCTCATGGCGGCGG 59 Query 57 TTATTGGAAACGTGGCGTTGTTACTTGACGTTAACTCTCACCGTACGGTGGTAACTGATC 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TTATTGGAAACGTGGCGTTGTTACTTGACGTTAACTCTCACCGTACGGTGGTAACTGATC 119 Query 117 GGAGAATTCGTTTAACGGTGGTCGACGTCGTTTTGAATTTACAAAAGAGAGATTCGCACA 176 |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 120 GGAGAATTCGTTTAACGGTGGTTGACGTCGTTCTGAATTTACAAAAGAGAGATTCGCACA 179 Query 177 GTCACGTTTCTCATTACGCTGCTCTCTCTTCCAATAAGCCTCTTGAATCTGACGGCGAAG 236 ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| | Sbjct 180 GTCACGTTTCTCACTACGCTGCTCTTTCCTCCAATAAGCCTCTTGAATCTGACGGCGAGG 239 Query 237 CTCGGGTTCGCCGGTTTTTAACTCGCGGAAAAGCGAATTCCAGAGCTAACGCCGTCGATT 296 ||||| |||||||||||||||||||||| || |||||||| || |||||||||||||||| Sbjct 240 CTCGGATTCGCCGGTTTTTAACTCGCGGTAAGGCGAATTCGAGGGCTAACGCCGTCGATT 299 Query 297 TCGACGACGCGGGATCCAGCGACGAAGAAAGTAGTGACGGAGGCGGTGGTGGTGGTGACg 356 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 300 TCGACGACGCGGGATCCAGCGACGAGGAAAGTAGTGACGGAGGCGGTGGTGGTGGTGACG 359 Query 357 aggaggaggaggaggaatatttcgatgtggagaaggagaggaagaggagagctaaggaaT 416 ||||||||||||| || | || ||||||||||||||||||||||||||||||||||||| Sbjct 360 AGGAGGAGGAGGAAGACT-TT--GATGTGGAGAAGGAGAGGAAGAGGAGAGCTAAGGAAT 416 Query 417 TTCATGATACGAAGGAGCTTGAGAGGAAAGCAGAGGAGTTACAGTATaagattgatgaag 476 |||| |||| ||||||||| |||||||||||||||||||| |||||||||||||| |||| Sbjct 417 TTCAGGATATGAAGGAGCTAGAGAGGAAAGCAGAGGAGTTGCAGTATAAGATTGACGAAG 476 Query 477 aaggagacgattcagaggagaagaagaggatgagagtgaaga-gagaaCTCCAAAAGGTA 535 |||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| Sbjct 477 AAGGAGACGATTCAGAGGAGAAGAAGAGGATGAGAGTGAA-ACGAGAGCTCCAAAAGGTA 535 Query 536 GCTCAGGAGCAAGCAGAGAGGAGAAAAACTGCAGAATTGATGTTTGAACTAGGTCAAAAG 595 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 536 GCTCAGGAGCAAGCAGAGAGGAGAAAAACTGCAGAATTGATGTTTGAATTGGGTCAAAAG 595 Query 596 GCTTATGGTAAAGGAATGTATGGACGAGCGATAGAGTTTCTT-GAAGGAGCTCTTACGAT 654 |||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||| Sbjct 596 GCTTATGGTAAAGGAATGTATGGACGCGCGATCGAGTTT-TTAGAAGGAGCTCTTACGAT 654 Query 655 TATCCCAAGGCCAACACTCTTTGGTGGTGAGATACAAATTTGGTTAGCTATGGCATATGA 714 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 655 TATCCCAAGGTCAACACTCTTTGGTGGTGAGATTCAAATTTGGTTAGCTATGGCATATGA 714 Query 715 GGCCAATAATCGCCACGCTGATTGCATTGATCTTTATCAGCAATTAGAGAAGAAACATCC 774 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 715 GGCCAATAATCGCCACGCTGATTGCATTGATCTTTATCAGCAACTAGAGAAGAAACA-CC 773 Query 775 C-AGTCCTGGTATTCGTCGTCAAGCTTCTGAGCTTCGGTATATCTTGCAAGCTCCTAAGC 833 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 CGAGTCCTGGTATTCGTCGTCAAGCTTCTGAGCTTCGGTATATCTTGCAAGCTCCTAAGC 833 Query 834 TTAAGATATCTCAGGAGGAAATGGTTACTATTCCCATGATCGGTTCAAGTTACGACAGCT 893 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 834 TTAAGATATCTCAAGAGGAAATGGTTACTATTCCAATGATCGGTTCAAGTTACGACAGCT 893 Query 894 ATGCAGTGACATGGAGTGATAAGGAAAGGGATAAGGAGCGGCGAATGAATGCATCGACTA 953 ||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| Sbjct 894 ATGCAGTGACATGGAGTGACAAGGAGAGGGATAAGGAGCGGCGAATGAATGAATCGACTA 953 Query 954 CGAATCAGCTCAACTCGAGTGATGATTTTCTAGGAAAGCTCTTGGTTTGGCGACCGGTGG 1013 |||||||||||||||||||||| || ||||| ||||||||||||||||||||||| | || Sbjct 954 CGAATCAGCTCAACTCGAGTGAAGACTTTCTTGGAAAGCTCTTGGTTTGGCGACCAGCGG 1013 Query 1014 TCGGTATGGAGAAGAACCGAGTCTTTTGGCTTGCTTTGACACTGTGGTTTGGTTTGGTTG 1073 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1014 TCGGTATGGAGAAGAACCGAGTCTTTTGGCTTGCTTTGACACTGTGGTTCGGTTTGGTTG 1073 Query 1074 GAGCAGCACTCATCTTACAAAGATAAGTAGAAGACATGCAAAATATTTTTCCATCGCTTT 1133 |||||||||||||||||||||||||||||||| | | ||| | |||||||| Sbjct 1074 GAGCAGCACTCATCTTACAAAGATAAGTAGAA----T------T-TTT--C-ATCGCTTT 1119 Query 1134 AAATTATGGTTTGGTACTACTGTTTCTTCTACTTGTCTTGAAATTATATTTGATTTCATG 1193 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1120 CAATTATGGTTTGGTACT---GTTTCTTCTACATGTCTTGAAATTATATTTGATTTCATG 1176 Query 1194 TATAAATGTGTAAGCAAATGAATTCGTCGT-TGTATATA-A-A------GTATTTGATGG 1244 ||||||| |||||||| |||||||||| || | |||||| | | ||||||||||| Sbjct 1177 TATAAATTTGTAAGCAGATGAATTCGTTGTATATATATATATATATATAGTATTTGATGG 1236 Query 1245 AAATATATATA-ACTTTGTTTATTTGATTATGTGTAATCTTTTTATAGTT 1293 ||||||||||| | ||| | ||||||||||||||| ||||||||||||| Sbjct 1237 AAATATATATATAATTTATGTATTTGATTATGTGTTCTCTTTTTATAGTT 1286 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48377981673 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5