BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26650.1 Length=1543 Score E Sequences producing significant alignments: (Bits) Value Ahg484431 jgi|Araly1|484431|fgenesh2_kg.5__423__AT3G26650.1 2386 0.0 Ahg471443 jgi|Araly1|471443|fgenesh2_kg.1__1397__AT1G12900.1 1236 0.0 > Ahg484431 jgi|Araly1|484431|fgenesh2_kg.5__423__AT3G26650.1 Length=1529 Score = 2386 bits (1292), Expect = 0.0 Identities = 1456/1532 (95%), Gaps = 23/1532 (2%) Strand=Plus/Plus Query 1 ACAACCATAGAAACAAGTAAGAAAGCTATCCAGAATCTAATCTTATTTGCCTCCAAGTCA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACAACCATAGAAACAAGTAAGAAAGCTATCCAGAATCTAATCTTATTTGCCTCCAAGTCA 60 Query 61 TCAATTCTTTATCCTATATTACTAGTCTCTGCTTCACCAATCCTTTTTGCTCTCCTGTCT 120 |||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| Sbjct 61 TCAATTCTTTATCCTATATTACCAATCTCTGCTTCACCAATCCTTTTTGCTCT-CTGTCT 119 Query 121 GCTACAAACCTTAACTTGGATTCTTTCTGGTCACCATGGCTTCGGTTACTTTCTCTGTCC 180 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 120 GCTAC-AACCTTAACTTGGATTCTTTCTGGTCACCATGGCTTCGCTTACTTTCTCTGTGC 178 Query 181 CCAAGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTCTCTTCCCTTCGGCA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 179 CCAAGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTGTCTTCCCTTTGGCA 238 Query 241 AGAAACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAATGGGAA 300 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 239 AGAAACTTTCTTCCGATGAGTTTGTTTCCATCGTATCCTTCCAGACTTCTGCAATGGGAA 298 Query 301 GCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATTAATGGAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 299 GCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATCAATGGAT 358 Query 361 TCGGTAGGATCGGGAGGAACTTCCTGAGATGTTGGCATGGTCGCAAGGACTCTCCTCTTG 420 |||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 359 TCGGTAGGATTGGGAGGAACTTCTTGAGATGTTGGCATGGTCGCAAAGACTCTCCTCTTG 418 Query 421 ATATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCGCATTTACTTAAATACG 480 ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| Sbjct 419 ATATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCCCATCTCCTTAAATACG 478 Query 481 ACTCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTG 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 ACTCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTG 538 Query 541 TTGATGGAAAGATCATCCAAGTTGTCTCTAACCGAAACCCGTCTCTTCTCCCTTGGAAGG 600 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 539 TTGATGGAAAGATCATCCAAGTTGTTTCTAACCGAAACCCGTCTCTTCTCCCCTGGAAGG 598 Query 601 AGCTAGGAATTGACATTGTCATCGAAGGAACCGGAGTGTTTGTGGATAGAGAAGGTGCAG 660 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 599 AGTTAGGAATTGACATTGTCATCGAAGGAACCGGAGTGTTTGTCGATAGAGAAGGTGCAG 658 Query 661 GGAAACACATTGAAGCTGGTGCCAAGAAGGTTATCATTACTGCTCCAGGCAAAGGAGATA 720 ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct 659 GGAAACACATTGAAGCTGGAGCCAAGAAGGTTATCATTACCGCTCCAGGGAAAGGAGATA 718 Query 721 TTCCAACTTATGTCGTTGGTGTCAATGCAGATGCTTACAGTCATGATGAACCTATCATCA 780 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 719 TTCCAACTTACGTCGTTGGTGTCAATGCAGATGCTTACAGTCATGATGAACCAATCATCA 778 Query 781 GCAATGCATCTTGCACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAAT 840 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 779 GCAATGCATCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAAT 838 Query 841 TCGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGC 900 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TTGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGC 898 Query 901 TAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCTA 960 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TAGACGCAAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCTA 958 Query 961 CTTCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAACTCA 1020 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 959 CATCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAGGGAAAACTCA 1018 Query 1021 ACGGGATCGCTCTCCGTGTACCAACACCAAACGTATCAGTGGTTGATCTCGTTGTGCAGG 1080 |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1019 ACGGAATCGCTCTCCGTGTACCTACACCAAACGTATCAGTCGTTGATCTCGTTGTGCAGG 1078 Query 1081 TCTCAAAGAAGACATTTGCTGAGGAAGTCAACGCTGCTTTCAGAGATTCTGCAGAGAAAG 1140 | |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1079 TTTCAAAGAAAACTTTTGCTGAGGAAGTTAACGCTGCTTTCAGAGATTCTGCTGAGAAAG 1138 Query 1141 AGCTTAAAGGTATACTCGATGTCTGCGATGAGCCACTAGTGTCCGTTGATTTCAGATGCT 1200 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1139 AGCTTAAAGGAATACTCGATGTCTGCGATGAGCCACTAGTGTCAGTTGATTTCAGATGCT 1198 Query 1201 CAGATTTTTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATATGGTTA 1260 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 CAGATTATTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATATGGTTA 1258 Query 1261 AGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACTTGGCTG 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 AGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACTTGGCTG 1318 Query 1321 ACATTGTTGCCAACAACTGGAAGTGATT-TCA-TC---AAA-C---TTTGTTTCATGttt 1371 |||||||||||||||||||||||||| | | | | ||| | |||||||||||||| Sbjct 1319 ACATTGTTGCCAACAACTGGAAGTGAATGTAACTTTTGAAATCAACTTTGTTTCATGTTT 1378 Query 1372 ttccattt-tt-t-t---ctctttctcttttttACATTATGGTTCTCAAAATATCGGTGA 1425 |||||||| || | | |||||| | |||||||||||||| |||||||||||||||||| Sbjct 1379 TTCCATTTATTCTCTTTTCTCTTTTTTTTTTTTACATTATGATTCTCAAAATATCGGTGA 1438 Query 1426 AGACTGTATAATTGTAGTA-TG-GATT-TGTAATA--AATAATCATAAACTATTCAAACT 1480 |||||||||||||||||| || | || || | | |||||| |||||||||||||||| Sbjct 1439 AGACTGTATAATTGTAGTCCTGAG-TTATGGATTTGTAATAATAATAAACTATTCAAACT 1497 Query 1481 TGTTTACATTTTGTGTTTTGTGATACACTTTT 1512 ||||||||||||||||||| ||| |||||||| Sbjct 1498 TGTTTACATTTTGTGTTTTATGAAACACTTTT 1529 > Ahg471443 jgi|Araly1|471443|fgenesh2_kg.1__1397__AT1G12900.1 Length=1348 Score = 1236 bits (669), Expect = 0.0 Identities = 1008/1172 (86%), Gaps = 21/1172 (2%) Strand=Plus/Plus Query 184 AGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTCTCTTCCCTTCGGCAAGA 243 |||||||| |||| ||||||||| | |||| |||||||| |||||||||| | ||||| Sbjct 41 AGGGTTTCTCTGAGTTCTCAGGACTCCGAAACTCCTCTG---CTCTTCCCTTTGCCAAGA 97 Query 244 AACT-TTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAATGGGAAGC 302 || | ||||||||||||||| |||||| ||||| ||||| |||||||||||||||||| Sbjct 98 AA-TCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAATGGGAAGC 156 Query 303 AGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATTAATGGATTC 362 | |||||||||||||||||| ||||| ||||||||| | ||||| ||||| | ||| ||| Sbjct 157 AATGGTGGATACAGGAAAGGAGTGACCGAGGCCAAGATAAAGGTAGCCATCAGTGGGTTC 216 Query 363 GGTAGGATCGGGAGGAACTTCCTGAGATGTTGGCATGGTCGCAAGGACTCTCCTCTTGAT 422 |||||||| || ||||||||| |||| |||||||||||||| |||||||||||||||||| Sbjct 217 GGTAGGATTGGTAGGAACTTCTTGAGGTGTTGGCATGGTCGTAAGGACTCTCCTCTTGAT 276 Query 423 ATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCGCATTTACTTAAATACGAC 482 || ||| |||||| ||||||||||| || || || || || ||| | || ||||||||| Sbjct 277 GTCGTTGTCATTAACGACACTGGTGGTGTTAAACAAGCATCACATCTCCTCAAATACGAC 336 Query 483 TCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGA-GACTGCAATCTCTGT 541 || ||||| ||||||||||| ||||||||||||||||||||||| | | || ||||||| Sbjct 337 TCAACTCTTGGAATCTTTGACGCTGATGTCAAACCTTCTGGAGATG-CAGCTCTCTCTGT 395 Query 542 TGATGGAAAGATCATCCAAG-TTGTCTCTAACCGAAACCCGTCTCTTCTCCCTTGGAAGG 600 |||||||||||||| |||| |||| ||| | || ||||| ||| |||||| ||| || Sbjct 396 CGATGGAAAGATCAT-CAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGG 454 Query 601 AGCTAGGAATTGACATT-GTCATCGAAGGAACCGGAGTGTTTGTGGATAGAGAAGGTGCA 659 | ||||| |||||| || || ||||||||||||||||||||||| || ||||| ||||| Sbjct 455 AACTAGGCATTGAC-TTGGTTATCGAAGGAACCGGAGTGTTTGTTGACAGAGATGGTGC- 512 Query 660 GGGAAA-CACATTGAAGCTGGTGCCAAGAAGGTTATCATTACTGCTCCAGGCAAAGGAGA 718 ||||| ||| || | ||||| |||||||||||| | |||||||| || || ||||| || Sbjct 513 TGGAAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTAATTACTGCACCTGGAAAAGGTGA 572 Query 719 TATTCCAACTTATGTCGTTGGTGTCAATGCAGATGC-TTACAGTCATGATGA-ACCTATC 776 || ||||||||||||||||| |||||||| || | ||| || ||||| || | | ||| Sbjct 573 CATCCCAACTTATGTCGTTGGCGTCAATGCTGA-ACTTTATAGCCATGAAGATA-CAATC 630 Query 777 ATCAGCAATGCATCTTGCACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAG 836 ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||||||||||| Sbjct 631 ATCAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAG 690 Query 837 AAATTCGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGG 896 |||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| ||| Sbjct 691 AAATTCGGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAAGG 750 Query 897 TTGCTAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTT 956 ||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 751 TTGTTAGATGCGAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCAGCTTTGAACATTGTT 810 Query 957 CCTACTTCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAA 1016 || || |||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 811 CCAACATCTACAGGAGCAGCCAAAGCTGTGGCTCTTGTGCTTCCTAACCTCAAAGGAAAA 870 Query 1017 CTCAACGGGATCGC-TCTCCGTGTACCAACACCAAACGTATCAGTGGTTGATCTC-GTTG 1074 ||||| || ||||| | | ||||| ||||| |||||||| ||||||||||| || || | Sbjct 871 CTCAATGGAATCGCAT-TGCGTGTGCCAACTCCAAACGTTTCAGTGGTTGA-CTTAGTCG 928 Query 1075 TGCAGGTCTCAAAGAAGACATTTGCTGAGGAAGTCAACGCTGCTTTCAGAGATTCTGCAG 1134 | |||||||| |||||||| |||||||| |||||||| ||||||||||||||| | || | Sbjct 929 TTCAGGTCTCCAAGAAGACTTTTGCTGAAGAAGTCAATGCTGCTTTCAGAGATGCAGCTG 988 Query 1135 AGAAAGAGCTTAAAGGTATACTCGATGTCTGCGATGAGCCACTAGTGTCCGTTGATTTCA 1194 ||||||||||||||||||||||||| ||||| |||||||| || || || ||||| |||| Sbjct 989 AGAAAGAGCTTAAAGGTATACTCGACGTCTGTGATGAGCCTCTTGTCTCTGTTGACTTCA 1048 Query 1195 GATGCTCAGATTTTTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATA 1254 | ||||| ||| | || | || |||||||| || ||||| ||||||||||||||||||| Sbjct 1049 GGTGCTCTGATGTATCCTCAACTATTGATTCTTCTCTCACAATGGTTATGGGAGATGATA 1108 Query 1255 TGGTTAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACT 1314 ||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| | Sbjct 1109 TGGTTAAAGTGATTGCTTGGTATGACAATGAATGGGGTTACTCGCAGAGAGTCGTTGATT 1168 Query 1315 TGGCTGACATTGTTGCCAACAACTGGAAGTGA 1346 ||||||||||||||||||| |||||||||||| Sbjct 1169 TGGCTGACATTGTTGCCAATAACTGGAAGTGA 1200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57782901665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5