BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26710.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484443 jgi|Araly1|484443|fgenesh2_kg.5__435__AT3G26710.1 1498 0.0
> Ahg484443 jgi|Araly1|484443|fgenesh2_kg.5__435__AT3G26710.1
Length=1003
Score = 1498 bits (811), Expect = 0.0
Identities = 963/1031 (93%), Gaps = 32/1031 (3%)
Strand=Plus/Plus
Query 101 TTTTGGATAGACCCATCATGTAAAGGTTTAAGCtttttttttGTTAGCCAAAGAGAAAGC 160
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTTTGGATAGACCCATCATGTAAAGGTTTAAGC------TTTGTTAGCCAAAGAGAAAGC 54
Query 161 -CTTTTTAGTTCTATTGACAATGGCGACGAAGCTGATTTCTCCGCCGTTGTCTTGTCCGT 219
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 55 TTTTTTTAGTTCTCTTGACAATGGCGACGAAGCTGATTTCACCGCCGTTGTCTTGTCCAT 114
Query 220 GGGTTACTTCAAGAGAGGTGAT-AATCAAAGGGCTTCCACGGCGGAGAAGAGAATGGATG 278
|||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 115 GGGTTACTTCAAGAGAGGTG-TCAATCAAAGGGCTTCCACGTCGGAGAAGAGAATGGATG 173
Query 279 GTCACGAAGAGAAACAGAGTCTCTGCTGTCACGGCCATGATTGTGGAGCCACTTTCTGTT 338
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 174 GTCACGAAGAGAAACAGAGTCTCTGCTGTCACCGCCATGATTGTGGAGCCACTTTCTGTT 233
Query 339 GTTTCTTCTTCAGCAATTCAGATTCATCAATGGTGGGAACAAAACCCTAATTCGTTACTG 398
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 234 GTTTCTTCTTCAGCGATTCAGATTCATCACTGGTGGGAACAAAACCCTAATTCGTTACTG 293
Query 399 TTAATGACGGAGGCTACTGGTGGTTATTCGTTGGCTAGCTATTATACGTCTTTGGGTTTG 458
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 294 TTAATGACGGAGGCTACTGGTGGTTATTCGTTGGCCAGCTATTACACGTCTTTGGGTTTG 353
Query 459 TTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTAATCAAACGCTCTGTTAAATCAAAGATA 518
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 354 TTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTTATCAAACGCTCTGTTAAATCTAAGATA 413
Query 519 GTGAGAAAGACGTTTGTTGTTAATGACGTCAAGAAGGAGCCAAAGCAAGTAGCTGGAGAG 578
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 414 GTGAGAAAGACGTTTGTTGTTAATGAAGTCAAGAAGGAACCAAAGCAAGTAGCTGGAGAG 473
Query 579 ATTCTATCTTTCTTCACAAGGAAGAATTTCAATATCACTGATCGTGGAGAAACAATCACA 638
|||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct 474 ATTCTATCTTTCTTCACAAGGAAGAATTTCAACATCACTGATCGAGGAGAGACGATCACG 533
Query 639 TTTGAAGGAAAGATGGTTCCAAGTAGAGGACAAGCTGCTCTGCTTACGTTTTGTACATGT 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTTGAAGGAAAGATGGTTCCAAGTAGAGGACAAGCTGCTCTGCTTACGTTTTGTACATGT 593
Query 699 ATAAGCTTAGCAAGTGTTGGTCTTGTCTTAACCATTACAGTTCCTGATTTTGGAAACAAT 758
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 594 ATAAGCTTAGCAAGTGTTGGTCTTGTCTTAACCATTACAGTGCCTGATTTTGGAAACAAT 653
Query 759 TGGTTCTTCATCATTCTCCTTAGTCCACTCGCAGGAGTGTATTACTGGAAAAAGGCGTCG 818
||||||||||||| || || || ||||||||||||||||||||||||||||||||||||
Sbjct 654 TGGTTCTTCATCACCCTTCTCAGCCCACTCGCAGGAGTGTATTACTGGAAAAAGGCGTCG 713
Query 819 AGGAAAGAGGAGATAAAAGTGAAGATGATGGTGGGATCAAAAGGGAGATTGGATGAGATT 878
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 714 AGGAAAGAGGAGATAAAAGTGAAGATGATGGTGGGAGAAAAAGGGAAATTGGATGAGATT 773
Query 879 GTGGTTCAAGGAGATGATGTTCAGGTCGAAGAAATGAGGAAAGAGCTTCAGCTTAATGAG 938
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||
Sbjct 774 GTGGTTCAAGGAGATGATGTTCAGGTTGAAGAGATGAGGAAGGAGCTTCAGCTTAGTGAG 833
Query 939 AAAGGCATGGTTTATGTCAAAGGTCTCTTTGAGAGATCATCATAATGATAACATTTTAGC 998
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 834 AAAGGCATGGTTTATGTCAAAGGTCTCTTTGAGAGATCATCATAAT--TA-CATTTTAGC 890
Query 999 CTC-CC-ATTTTTGCCTTTTGGGGAATGTGTCTATACTTGTTTTATTAAGGTTGAGATTA 1056
||| || | |||||||||||||||||||||| ||||||| || | | | ||
Sbjct 891 CTCTCCCAATTTTGCCTTTTGGGGAATGTGTTTATACTT-TT--A--A---T-GA----- 936
Query 1057 ATGACTTTTTAACTCATTTCCCATACTTCATACTAAACGAATCGATTTGAATATAGTTCA 1116
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 937 ----CTTTTTAACTCATTTTCCATACTTCATACTAAACAAATCGATTTGAATATAGTTCA 992
Query 1117 TTTGATTGAGC 1127
|||||||||||
Sbjct 993 TTTGATTGAGC 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5